- absolute() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
set the value to its absolute value
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Presenter
-
ActionListener interface (for menus)
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
ActionListener interface (for menus)
- actualPs - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
-
- add(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
adds the constant to each value of the variable
- addAnalysisMenuItems() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
create and add an Analysis menus to the JFrame
- addEditMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
-
- addFileMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
-
adds the file menu items
- addMenus() - Method in class com.lobsterman.JavaGrinders.AppEngine
-
sets up menus for the tracking application
- addMenus() - Method in class com.lobsterman.JavaGrinders.Presenter
-
adds menus to the JFrame
- addMenus() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
adds menus to the JFrame
- addSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
adds rows that match a given object to the currently selected set of rows
- addValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends a number to the end of the Variable
- addValue(double) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends a number to the end of the Variable
- addValue(float) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends a number to the end of the Variable
- addValue(Object) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends an Object to the end of the Variable
- analyze_nY() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs an analysis of multiple dependent variables
- analyze_nY() - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
-
peforms an analysis of multiple dependent variables
- analyzeMultXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates analyses for multiple dependent on multiple independent variables
- analyzeMultY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates analyses for multiple dependent on multiple independent variables
- Analyzer - Class in com.lobsterman.JavaGrinders
-
Analyzer class - sets up a generic data analyzer, it does not do much aside from
planting the general roots for analyzers
- Analyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.Analyzer
-
Standard constructor using a VariableOrganizer
- analyzeXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates univariate analyses for dependent on independent variables
- analyzeY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
describes one or multiple Y columns
- analyzeY(Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
describes one or multiple Y columns
- ANGLES - Static variable in class com.lobsterman.JavaGrinders.VariableType
-
- append(Object[]) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends the variable to the end of the variable
- AppEngine - Class in com.lobsterman.JavaGrinders
-
the main class controlling a video tracking application
- AppEngine(String) - Constructor for class com.lobsterman.JavaGrinders.AppEngine
-
Standard constructor for the Tracker class.
- as2DdoubleArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the private array of data values for the ContingencyTable
- as2DStringArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the private array of data values for the ContingencyTable
- asAngleVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
return the variable as an AngleVariable with data representing angular degrees
- asCircularGraph(AngleVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a circular graph for the provided angles
- asColorHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a histogram for the provided table
- asColorHistogram(ContingencyTable, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a histogram for the provided table
- asConcatStrVariable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a new VariableOrganizer containing all variables which have been
selected as independent variables (i.e., VariableDesignRole.X) and all selected rows
- asDataTable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a DataTable of doubles for variables in the variableorganizer which have been
selected as dependent variables (i.e., VariableDesignRole.Y)
- asDoubleArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a 2D array of doubles for the variables in the variableorganizer which have been
selected as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or
nominal
- asHistogram() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a frequency histogram
- asHistogram(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a frequency histogram
- asHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a circular graph for the provided angles
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the private array of data values for the ContingencyTable
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a matrix for the variables in the variableorganizer which have been selected
as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a matrix for the variables in the variableorganizer which have been selected
as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
- asNormalQuantilePlot() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data
- asProximity() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a proximity matrix for the variables in the variableorganizer which have been selected
as dependent variables (i.e., VariableDesignRole.Y)
- assertTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- asSpatialMap(CaptureVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asSpatialMap(CaptureVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asStringArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a 2D array of doubles for the variables in the variableorganizer which have been
selected as dependent variables (i.e., VariableDesignRole.Y)
- asTablePresenter() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
Creates a presenter from a VariableOrganizer for all the variables the organizer knows about
- asTimeVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
return the variable as an TimeVariable with data representing milliseconds
- asVariableOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable as a variable organizer filled with this variable
- asVariableOrganizerX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a new VariableOrganizer containing all variables which have been
selected as independent variables (i.e., VariableDesignRole.X) and all selected rows
- asVariableOrganizerY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a new VariableOrganizer containing all variables which have been
selected as dependent variables (i.e., VariableDesignRole.Y) and all selected rows
- asXYPlot(NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatterplot with another numeric variable
- asXYPlot(NumberVariable, boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatter plot with another numeric variable
- asXYPlot(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatter plot with another numeric variable
- asXYPlot(NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatterplot with another numeric variable
- asXYPlot(NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatterplot with another numeric variable
- asXYPlot(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(NumberVariable, NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(NumberVariable, NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(NumberVariable, NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- autoExtracted - Variable in class com.lobsterman.JavaGrinders.Variable
-
- calcContingencyResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculates the test of independence and returns ChiSquare and GValue
- calcGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculates the test of independence and returns ChiSquare and GValue
- CharVariable - Class in com.lobsterman.JavaGrinders
-
handles a variable of single characters.
- CharVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.CharVariable
-
Standard constructor for the character variable class using a VariableOrganizer
- checkAllUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether all rows contain valid and selected data
- checkDiagonal() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
does the matrix shave a diagonal?
- checkForColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
checks whether column probabiities have been set
- checkForZeros() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
checks whether any column probabiities are zero
- checkInOrder() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
examine whether this variables is locked
- checkInOrder(boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
examine whether this variables is locked
- checkLocked() - Method in class com.lobsterman.JavaGrinders.Variable
-
examine whether this variables is locked
- checkMatchingMatrixDimensions(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
examine whether this matrix has the same dimensions as the one provided?
- checkMatchingRows(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examine whether this variables has the same number of rows as the provided ContingencyTable
- checkMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
examines the matrix for invalid entries
- checkMatrix() - Method in class com.lobsterman.JavaGrinders.DataTable
-
examines the matrix for invalid entries, all values may occur, so no flag is thrown
- checkMinimumN(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
checks whether column probabiities have been set
- checkMinUseRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether a minimum number rows is selected
- checkMinVars(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
examines whether a minimum number of variables is selected
- checkNumberIDs(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
checks whether there is a given number of distinct IDs present in the currently
selected set of rows
- checkSameIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
checks whether two variables have identical sets of distinct IDs in the currently
selected set of rows
- checkSameNRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the variable has the same number of rows as another variable
- checkSameNSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected as in another variable
- checkSameSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected as in another variable
- checkSameSelectRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected as in another variable
- checkSameUseRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected and not missing as in another variable
- checkSameUseRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected and not missing as in another variable
- checkSquare() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
is matrix square?
- checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
checks whether a given row is within a valid range
- checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
checks whether a given row is within a valid range
- ChiSqValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- ChiSqValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- ChiSqValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
clears all assigned design roles for the variables
- clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
clears all assigned design roles for the variables
- clearColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clears the external probabilities
- clearPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clears the external probabilities
- clearSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
zero the sums for rows, columns, and total of the ContingencyTable
- clearTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
zero the sums for all individual cells of the ContingencyTable
- clearTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clears the external probabilities
- clearVariableDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
clears the design roles from all columns
- clone() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.Descriptives
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.Variable
-
clone the object
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.BooleanVariable
-
returns a BooleanVariable with only the selected rows
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.StrVariable
-
returns a NumberVariable with only the selected rows
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a clone of the Variable with selected rows only
- cloneVariableFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
fills the variable as a clone of the variable
- colToString(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the formatted object as a string
- com.lobsterman.JavaGrinders - package com.lobsterman.JavaGrinders
-
- combineSelectedWithSavedSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
combines the current set of selected rows with that set that has been saved earlier using saveSelectedRows()
- confirmMinXVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
checks whether there are sufficient dependent variables available
- confirmMinYVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
checks whether there are sufficient dependent variables available
- confirmOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
confirms that a VariableOrganizer is available
- containsZero() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns whether the space contains the zero value
- ContingencyAnalyzer - Class in com.lobsterman.JavaGrinders
-
coordinates the analysis of contingency tables in an application.
- ContingencyAnalyzer(VariableOrganizer, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Standard constructor using a VariableOrganizer
- ContingencyAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Standard constructor using a VariableOrganizer, assuming that the diagonal is present
- ContingencyAnalyzer(ContingencyTable) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Standard constructor, providing it with a contingency table directly
- ContingencyTable - Class in com.lobsterman.JavaGrinders
-
contains a crosstabulation frequency table and performs a variety of statistics
on it, including G-test, Chi-square, mantel, Kendall's Tau, etc.
- ContingencyTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(int, int, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(double[][], boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
constructor for the ContingencyTable class with a JAMA Matrix provided
- CONTINUOUS - Static variable in class com.lobsterman.JavaGrinders.VariableType
-
- ContResults - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
-
- controlAnalyze_1Y1X(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of dependent onto independent variable
- controlAnalyze_1YnX(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of one dependent onto multiple independent variable.
- controlAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of multiple dependent variable.
- controlAnalyze_nY1X(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of multiple dependent onto one independent variable.
- controlAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of multiple dependent onto multiple independent variable.
- ContTableResults - Class in com.lobsterman.JavaGrinders
-
holds a set of results obtained for an analysis of a contingency table
- ContTableResults() - Constructor for class com.lobsterman.JavaGrinders.ContTableResults
-
- copyDataArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
Constructor for the ECG_Analyzer class.
- copyDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the descriptives for the variable
- copyNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns descriptive Statistic for the variable using the currently
selected set of rows
- copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows based on select state of another variable
- copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows based on select state of another variable
- copyStringArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
Constructor for the ECG_Analyzer class.
- createContingencyTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- createCrossTabulationtionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- createTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- createTransitionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- customColorFromData(NumberVariable, Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a custom colors for all selected rows
- customColorSelectedRows(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a custom colors for all selected rows
- customColorSelectedRows(Color, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a custom colors for all selected rows
- CV - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- dashedStroke - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
-
- DataFileParser - Class in com.lobsterman.JavaGrinders
-
interfaces with disk-based files.
- DataFileParser(String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
-
standard constructor for the DataFileParser class
- DataFileParser(String, String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
-
standard constructor for the DataFileParser class
- DataFileParser() - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
-
constructor for the DataFileParser class if no text file name is provided
- DataTable - Class in com.lobsterman.JavaGrinders
-
Unlike a contingency table, a data table may contain negative values (e.g.
- DataTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the DataTable class
- DataTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the DataTable class
- DataTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the DataTable class
- DataTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
constructor for the DataTable class with a JAMA Matrix provided
- DataTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the ContingencyTable class
- DataTablePresenter - Class in com.lobsterman.JavaGrinders
-
given a DataParser object, its content is formatted automatically and
presented as a JTable object placed within a scrollpane within a frame
- DataTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.DataTablePresenter
-
Standard constructor for the DataTablePresenter class using a VariableOrganizer
- DATETIME - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
-
- deleteAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
delete all rows from the Variable
- deleteAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deletes all rows from all the variables that are registered with the VariableOrganizer
- deleteCol(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete a column from the VariableOrganizer
- deleteCols() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all columns from the Organizer
- deleteColsNonX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all non-X-selected columns from the Organizer
- deleteColsNonY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all non-Y-selected columns from the Organizer
- deleteDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
deletes duplicate rows
- deleteMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
deletes all missing rows
- deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
delete all non-selected rows
- deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all non-selected rows from the Organizer
- deleteRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
delete a row from the Variable
- deleteRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deletes a row from all the variables that are registered with the VariableOrganizer
- deleteRowNoCheck(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
delete a row from the Variable without coordinating a VartiableOrganizer
- deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
deletes all selected rows
- deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deletes all selected rows
- Descriptives - Class in com.lobsterman.JavaGrinders
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- Descriptives() - Constructor for class com.lobsterman.JavaGrinders.Descriptives
-
empty private constructor ensures that the only objects of this type are the elements
enumerated above
- deselectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows to false
- deselectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows to false
- deselectRowsWithMissing() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deselects all rows if a value is missing in any of the included variables
- df - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- df0 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df1 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df2 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df3 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df4 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df5 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
-
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- distance(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
the absolute value after subtracting the constant from each value of the variable
- divide(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
divides each value of the variable by the constant
- doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the descriptive statistics results for a variables
- doAnalyze_1Y(Variable, Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from a comparison with an a-priori mean
- doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
lists the results from a transition analysis of the variables.
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on one independent variable
(with 2 states).
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs a Contingency analysis (Y variable with 2 groups)
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
performs a parametric analysis with one Y and one X variable (with 2 groups)
- doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on one continuous indepent
variable.
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on one independent variable
(with more than 2 states).
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs a Contingency analysis (Y variable with n groups)
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
performs a parametric analysis with one Y and one X variable (with multiple groups)
- doAnalyze_1YnXcontinuous(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on multiple independent
variable.
- doAnalyze_1YnXnGroups(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on multiple indepent
variable.
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
performs an analysis of multiple dependent variable.
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
controls an analysis of multiple dependent variables
- doAnalyze_nY1Xcontinuous(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent continuous variable on multiple indepent
variable.
- doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one ordinal or nominal dependent variable on multiple indepent
variable.
- doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
-
lists the results from an analysis of one dependent variable on multiple indepent
variable.
- doAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on multiple indepent
variable.
- doClear() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a clear event
- doClose() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a close event
- doClose() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a close Document event
- doCopy() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a copy event
- doCorrelationAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over th intercept
- doCut() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a cut event
- doDescribeX() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
handles the describe all X variables event
- doDescribeY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
handles the describe all Y variables event
- doFitXY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
handles the fit Y by X variables event
- doHierarchyAnalysis() - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
reports individual ordinal ranks and a hierachy analysis for a dominance matrix
- DominanceTable - Class in com.lobsterman.JavaGrinders
-
contains a table of dominance relationships and performs a variety of statistics
on it, including test of linearity, ordinal ranks, etc.
- DominanceTable(int) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
-
standard constructor for the DominanceTable class
- DominanceTable(int, double[][]) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
-
standard constructor for the DominanceTable class
- doNew() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a new Document event
- doOpen() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles an open Document event
- doPaste() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a paste event
- doPruneClosePeaks(ArrayList<Integer>, NumberVariable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- doRegressionAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- doRegressionAnalysis(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- doSave() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a save event
- doSave() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a save Document event
- doSaveAs() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a save as event
- doSaveAs() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a save as ...
- doSelectAll() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a select all event
- doUndo() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles an undo event
- doWarnings - Variable in class com.lobsterman.JavaGrinders.Grid
-
- DoWilliamsCorr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculates the William's correction
- drawBGImage(Graphics2D, Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
adds a background image to the panel
- drawFrame - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
-
- drawFrame(Graphics2D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
draw a frame around the PreenterPanel's active drawing area
- getAbasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of char stored at a given row of the Vector and converts it into
an integer starting with 0 at a char of 'A'
- getabasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of char stored at a given row of the Vector and converts it into
an integer starting with 0 at a char of 'a'
- getANOVAResults(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the ANOVA statistics for the variable
- getANOVAResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the ANOVA statistics for a full factorial model
- getArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns an array of double values of the Vector
- getAutoCorrelationResults() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
obtains the Autocorrelation statistics for the variable
- getAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
-
automatically finds and sets the number of units in the space
- getBBSRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a cardinal rank (BBS method) for each individual
- getBinMeans(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a frequency distribution for a given set of bins
- getbooleanValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a boolean
- getBotLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the bottom of the frame
- getBoydSilkRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a cardinal ranks for stochastic transitivity Boyd and Silk (1983) for each individual
- getCell(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the double from one element of this matrix
- getCellValue(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the double from one element of this matrix
- getCentered() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its mean
- getcharValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of char stored at a given row in the Vector
- getColLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular column label for the ContingencyTable
- getColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns column labels for the ContingencyTable
- getColMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
-
returns the sums for each row as a 1 dimensional Matrix
- getColSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the sum for a particular row of the table
- getColSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the row sums of the table
- getColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getCombinedIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a TreeMap containing all different values found in either this variable
using the currently selected set of rows or in the selected rows of a second variable
- getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs a Test of Independence on the
ContingencyTable/
and reports the results as statistics for X2 and loglikelihood ratio.
- getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the results for a test of independence with expected frequencies calculated from observed
- getContingencyTableResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the results for a test of independence with the provided expected values
- getCoordMapRect() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
gets the Presenter that owns the Panel
- getCorrelationResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over th intercept
- getCrossTabulation(Variable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a crosstabulation of values for two variables in form of a matrix
- getCrossTabulation(Variable, TreeMap<Object, Integer>, TreeMap<Object, Integer>, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a crosstabulation of values for two variables in form of a matrix
- getCustomColorRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the custom color for a given row
- getDataFileName() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- getDataNotes() - Method in class com.lobsterman.JavaGrinders.BasicData
-
- getDataTimeStamp() - Method in class com.lobsterman.JavaGrinders.BasicData
-
- getDataValue() - Method in class com.lobsterman.JavaGrinders.BasicData
-
- getDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the descriptives for the variable
- getdf() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the degrees of freedom for the ContingencyTable
- getDifferenceTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getDirection() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the direction of the Axis
- getDominanceActivityIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a dominance activity index for each individual
- getDominanceIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a dominance index for each individual
- getDominanceMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getdoubleArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns an array of double values of the Vector
- getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the value stored at a given row of the Vector as a double
- getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a double
- getdoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a double
- getExpectedMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpectedMatrix(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpMatrixFromProbabilities() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence if the diagonal
is structurally zero
- getFirstDerivative(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its mean
- getFirstLabelColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the first label variable in the VariableOrganizer
- getFirstXColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the first dependent (X) variable in the VariableOrganizer
- getFirstYColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the first dependent (Y) variable in the VariableOrganizer
- getfloatValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a float
- getFrequencies(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a frequency distribution for a given set of bins
- getFrequencies() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the frequencies for different instances of the variable using the currently
selected set of rows up to the specified number of maxInstances
- getFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns Freeman-Tukey deviates for a cell wise examination of the table
- getGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
coordinates a replicated goodness of fit test
- getGrid() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the grid in the dimension
- getGridInterval() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the grid interval for the axis
- getGridSpace3D() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the GridSpace used in mapping the points
- getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the descriptives for the groups identified by X
- getGroupNs(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns an array of sample sizes of Ys for multiple states defined in X
- getHigh() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the high value
- getHighliteColor() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the highlite color for the animal
- getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row is currently highlited.
- getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given row is currently highlited
- getHypothesisPs() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
returns the expected probabilities for different columns
- getIDMap() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a TreeMap containing all different values found in the variable using
the currently selected set of rows
- getIDs() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a TreeMap containing all different values found in the variable using
the currently selected set of rows
- getIDString(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a single entry for a key in the TreeMap as a String
- getIDStrings() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the keys in the TreeMap as strings
- getImage() - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
-
returns the image to display in the panel
- getInteractions(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a crosstabulation of values for two variables in form of an interaction matrix
- getintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as an int
- getItemValues(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists the Variables registered with the VariableOrganizer
- getJaccard(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the Manhattan proximity measure to another variable
- getLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
return the currently selected set of labels
- getLeftLabelPos(String) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the top of the frame
- getLinearityResults() - Method in class com.lobsterman.JavaGrinders.DominanceTable
-
returns results from a Test of Linearity.
- getLineColor() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the line color for the variable
- getLocationColor() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the location color for the variable
- getlongValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of long stored at a given row in the Vector
- getLow() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the low x
- getManhattan(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the Manhattan proximity measure to another variable
- getMantelP(ContingencyTable, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
performs Mantel's test with number of permutations limited by MaxPermutations
- getMantelZ(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculate Mantel's Z statistic for a matrix and a second matrix passed in
- getManWhitneyUResults(Variable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the results from an analysis of differences in mean angle distance from a hypothetical direction
- getMatrixSize() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getMaxValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the maximum value stored in the Vector as a double
- getMaxValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getMeanValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector as a double
- getMinValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the minimum value stored in the Vector as a double
- getMinValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getMissingRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row is currently missing.
- getMovingAverageSmoothing(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its mean
- getMultLinRegressionResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getName() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getName() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the name of the Variable
- getNCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the total number of cells for the ContingencyTable
- getNCellsAboveEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells above or equal to a given value
- getNCellsAboveValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells above a given value
- getNCellsBelowEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells below or equal to a given value
- getNCellsBelowValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells below a given value
- getNCols() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of columns of the Table
- getNColumns() - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
provides read access to private variable nCols
- getNDataRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
returns the number of valid data rows that were read from the text file
- getNDiagonals() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the total number of cells for the ContingencyTable
- getNextSelectLabelIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the next label column after a given column
- getNextSelectXColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the next selected column after a given column
- getNextSelectYColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the next selected column after a given column
- getNIDs() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of different values present in the currently selected set of rows
- getNLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many labels are under the control of this VariableOrganizer
- getNMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of missing rows in the currently selected set
- getNotes() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the Notes of the Variable
- getNoZeroCellMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the values from the matrix with a constant of 0.25 added to each cell
- getNRows() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of rows of the Table
- getNRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
provides read access to private variable nRows
- getNRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of rows in the Variable
- getNRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the number of rows for the VariableOrganizer
- getNSelectRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of currently selected rows for the variable
- getNSelectRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the number of selected rows
- getNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the descriptive statistics for the variable and returns the results
- getNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the number of units in the space
- getNUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of currently selected rows for the variable which do
not have missing values
- getNValidRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the number of valid rows in the currently selected set
- getNVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many variables are under the control of this VariableOrganizer
- getNXVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the number of independent variables in the Organizer
- getNXVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many X variables are under the control of this VariableOrganizer
- getNYVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the number of dependent variables in the Organizer
- getNYVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many Y variables are under the control of this VariableOrganizer
- getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.DominanceTable
-
returns ordinal ranks for each individual
- getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
returns individual ordinal ranks from matrix of interactions between entities.
- getOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the VariableOrganizer instance
- getOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the VariableOrganizer for the Variable
- getOrigin() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the origin of the dimension
- getParser() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- getPeakData(ArrayList<Integer>, NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- getPeakIntervals(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- getPeakLocations(NumberVariable, int, float, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
from Tom O'Haver's toh@umd.edu great tutorial at
- getPeaksPalshikar(int, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
A standard peak detector in time series by Jean-Yves Tinevez jeanyves.tinevez@gmail.com May 10, 2011
The goal of this class is to identify peaks in a 1D time series (float[]).
- getPeakTriggeredTraces(NumberVariable, ArrayList<Integer>, long) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
from Tom O'Haver's toh@umd.edu great tutorial at
- getPeakValues(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- getPermutedTable(int[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
gets a variant of the interactionTable with rows and columns switched with
a given permutation
- getPropMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for proportional fitting with diagonal
present
- getPropMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for proportional fitting with diagonal
absent (see Bishop et al., 1975; following Freeman, 1992)
- getProximity(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the proximity measure to another variable
- getProximity(Variable, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the proximity measure to another variable
- getRandomValue() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a randomly selected row of the Vector
- getRange() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the minimum value stored in the Vector as a double
- getRanks() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
return the ranks for the values in this array of the currently selected subset
- getRegressionResiduals(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResiduals(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResiduals(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over th intercept
- getRegressionResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResults(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResults(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getReplicatedGoodnessOfFitResults(Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
-
- getRightLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the bottom of the frame
- getRowLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular row label for the ContingencyTable
- getRowLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns row labels for the ContingencyTable
- getRowMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
-
returns the means for each row as a double array
- getRowNumbers() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of currently selected rows for the variable
- getRowOrder() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the row order for the Variable
- getRowOrderRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the row order
- getRowSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the sum for a particular row of the table
- getRowSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the row sums of the table
- getSDValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector as a double
- getSelectCell(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given cell of the datamatrix is currently selected
- getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row is currently selected.
- getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given row is currently selected
- getSignedRank(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the signed ranks of distances to the specified value
- getSignedRankW(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the one-tailed sum of signed ranks
- getSignedRankWProbability(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the one-tailed robability of obtaining this Signed Rank W or greater
- getSpace() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the dimension of the grid space
- getSquEuclidian(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the Euclidian proximity measure to another variable
- getStringArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a given row of the Vector as a String
- getStringValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a given row of the Vector as a String
- getSumValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector as a double
- getTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
returns the crosstabulation (i.e., frequency) table
- getTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getTauKr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
organize a TauKr test for a correlation between actor and receiver matrix
- getTauKrP(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
performs the Kr test with number of permutations limited by MaxPermutations
- getTopLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the top of the frame
- getTotalsMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix in which cells from actor and receiver section
of the ContingencyTable have been summed into a total cell value
- getTotalSum() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the sum for a particular row of the table
- getTransitions() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the transitions among consecutive values in form of a matrix
- gettTestResults(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
obtains the t-Test results for the variable
- gettValue(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector as a double
- getUseRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row can be used.
- getValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a given row of the Vector
- getVariable(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a particular variable designated by a reference number,
this corresponds to the zero-based order in which variables were
registered with the VariableOrganizer.
- getVariable(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a particular variable designated by a variable name
- getVariableDesignRole() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable design role
- getVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given column is currently chosen as X, Y, label or not selected
- getVariableDesignRoleString() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable design role as a character string
- getVariableFormat() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable format
- getVariableIndex(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the index of a particular variable designated by a variable name
- getVariableMeans() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists the Variables registered with the VariableOrganizer
- getVariableNames() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
return the names of all variables
- getVariablePosition(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the position in the vector for a particular variable
this corresponds to the zero-based order in which variables were
registered with the VariableOrganizer.
- getVariableType() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable type
- getVarianceValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector as a double
- getVersion() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
-
- getXVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the first dependent variable of the Organizer
- getYVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the first independent variable of the Organizer
- getYVariableNames() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the matrix of all continuous, dependent variables.
- getZeroCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of empty cells for the ContingencyTable
- getzQuantiles() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its mean
- getzTransform() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its mean
- GoodnessOfFitResults - Class in com.lobsterman.JavaGrinders
-
holds a set of results obtained for an analysis of a contingency table
- GoodnessOfFitResults(int, int, double[], int) - Constructor for class com.lobsterman.JavaGrinders.GoodnessOfFitResults
-
Standard constructor
- Grid - Class in com.lobsterman.JavaGrinders
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- Grid() - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with maximum values provided
- Grid(double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with maximum values provided
- Grid(double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float, boolean) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(NumberVariable, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float, boolean, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- GroupAnalyzer - Class in com.lobsterman.JavaGrinders
-
Analyzer class - sets up a generic data analyzer, * it does not do much aside from planting the general roots for analyzers
- GroupAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.GroupAnalyzer
-
Standard constructor
- gRowHighlitedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- gRowSaveSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- gRowSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- GValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- GValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- GValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- label - Variable in class com.lobsterman.JavaGrinders.Descriptives
-
- LABEL - Static variable in class com.lobsterman.JavaGrinders.VariableDesignRole
-
- labelGap - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
-
- Landau - Variable in class com.lobsterman.JavaGrinders.LinearityResults
-
- LinearityResults - Class in com.lobsterman.JavaGrinders
-
holds a set of results obtained for an analysis of linearity applied to a
dominance table
- LinearityResults() - Constructor for class com.lobsterman.JavaGrinders.LinearityResults
-
- list() - Method in class com.lobsterman.JavaGrinders.BasicData
-
- list() - Method in class com.lobsterman.JavaGrinders.Descriptives
-
reports the descriptives for the variable
- list(Double) - Method in class com.lobsterman.JavaGrinders.Descriptives
-
reports the appropriate descriptives for comparing the variable to an external value
- list(Double) - Method in class com.lobsterman.JavaGrinders.NumberDescriptives
-
reports the appropriate descriptives for comparing the variable to an external value
- listAll() - Method in class com.lobsterman.JavaGrinders.Descriptives
-
reports the complete set of descriptives
- listAll(Double) - Method in class com.lobsterman.JavaGrinders.Descriptives
-
reports the complete set of descriptives for comparing the variable to an external value
- listAllVersions() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
-
- listBasics() - Method in class com.lobsterman.JavaGrinders.Descriptives
-
reports the basic descriptives for the variable
- listBasics() - Method in class com.lobsterman.JavaGrinders.NumberDescriptives
-
reports the current values of the variables
- listContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs a Test of Independence on the
ContingencyTable/
and reports the results as statistics for X2 and loglikelihood ratio.
- listContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
does the test and returns its results
- listCorrelationResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over th intercept
- listDebug - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- listDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
-
lists the descriptive statistics for the variable using the currently
selected set of rows
- listDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists the descriptive statistics for the variable using the currently
selected set of rows
- listDescriptives() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
list descriptives for all Yvariables of the variableorganizer
- listDetail - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- listExpectedTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- listExpectedTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
lists a matrix of expected values
- listFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- listFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
lists Freeman-Tukey deviates for a cell wise examination of the table
- listGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
reports the results for a replicated goodness of fit test with external hypothesis probabilities
- listGroupDescriptives(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the descriptive statistics for the groups identified by X
- listGroupDescriptives(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
lists the descriptive statistics for the groups identified by X
- listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
lists the descriptives for the groups identified by X
- listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists the descriptives for the groups identified by X
- listGroupDescriptivesNoDia(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists the descriptives for the groups identified by X
- listIDs() - Method in class com.lobsterman.JavaGrinders.Descriptives
-
lists the frequencies for all instances of the variable using the currently
selected set of rows
- listIDs(int) - Method in class com.lobsterman.JavaGrinders.Descriptives
-
lists the frequencies for different instances of the variable using the currently
selected set of rows up to the specified number of maxInstances
- listinFileInfo() - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
report some info on the content read from the text file
- listinFileInfo(int, int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
report some info on the content read from the text file
- listLinearityResults() - Method in class com.lobsterman.JavaGrinders.DominanceTable
-
lists results from a Test for Linearity.
- listLinearityResults() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
lists results from a Test for Linearity.
- listMantelZResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
lists Mantel's Z for the table
- listMultLinRegressionResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- listOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.DominanceTable
-
report ordinal ranks for each individual
- listPeaks(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
from Tom O'Haver's toh@umd.edu great tutorial at
- listRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
list ranks for each individual
- listRegressionResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- listRegressionResults(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- listRegressionResults(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- listReplicatedGoodnessOfFitResults(Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
-
- listResults() - Method in class com.lobsterman.JavaGrinders.ContTableResults
-
does the test and returns its results
- listResults() - Method in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
-
does the test and returns its results
- listRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists data value for a single row
- listRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists data values for a single row
- listRowOrder(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists data values for a range of rows
- listRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
lists all data values in the variable
- listRows(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists all data values in the variable
- listRows(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists data values for a range of rows regardless of selection
- listRows(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists data values for a range of rows
- listRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists all data values in the variable
- listRows(boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists all data values in the variable
- listRows(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists data values for a range of rows
- listRuntimeMemory() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
-
- listSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
lists data values for all selected rows in the variable
- listSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists data values for all selected rows in the variable
- listSelectState() - Method in class com.lobsterman.JavaGrinders.Variable
-
lists for each row whether it is selected or not
- listSelectState(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
lists for a range of rows whether it is selected or not
- listSelectState() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists for each row whether it is selected or not
- listSelectState(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists for a range of rows whether it is selected or not
- listSigStars(double) - Method in class com.lobsterman.JavaGrinders.Descriptives
-
adds stars to indicate levels of significance
- listTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- listTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
lists the table
- listTable(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
lists the table
- listTauKrResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
lists the Tau Kr for the table
- listTetradAnalysis(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.GroupAnalyzer
-
performs an analysis of the direction of three consecutive dyadic * interactions following Chase's jig-saw puzzle approach.
- listUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
lists data values for all selected rows in the variable
- listVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists the Variables registered with the VariableOrganizer
- listVersion() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
-
- listWarnings - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- LOCATIONS - Static variable in class com.lobsterman.JavaGrinders.VariableType
-
- saveRowsToFile(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
saves all data values to a text file
- saveRowsToFile(int, int, boolean, String) - Method in class com.lobsterman.JavaGrinders.Variable
-
saves data values for a range of rows to a text file
- saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
saves the select flag for all currently selected rows
- saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
saves the select flag for all rows
- saveTheContent(File) - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a save as event
- saveToSVGFile(String) - Method in class com.lobsterman.JavaGrinders.Presenter
-
saves the content of the PresenterPanel to an SVG file
- scaleWindow() - Method in class com.lobsterman.JavaGrinders.AppEngine
-
scales the frame of the tracker to fit onto the screen.
- SDY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SE - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- selectAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value greater than the one provided
- selectAbove(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that contain a double value above a given double value with the option
to select from the previous set
- selectAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value greater or equal than the one provided
- selectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows to true
- selectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows to true
- selectBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value less than the one provided
- selectBelow(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that contain a double value below a given double value with the option
to select from the previous set
- selectBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value less or equal than the one provided
- selectDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all duplicate rows
- selectEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value greater or equal than the one provided
- selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for every nth row to true
- selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for every nth row to true
- selectRange(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value between the lower and upper limits provided.
- selectRange(Variable, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that contain a double value between two given double values with
the option from the previous set
- selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows to true
- selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows to true
- selectUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
restricts the select flag to those rows that are usable in both variables
- selectValue(String, boolean) - Method in class com.lobsterman.JavaGrinders.StrVariable
-
select all rows with a String that matches the one provided
- selectValue(Object, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
selects rows that match a given object from the currently selected set of rows
- selectValue(Variable, Object, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that match a given value in a given variable with the option to select
from the previous set
- set2DArray(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets a 2D array of doubles for the ContingencyTable
- setAnglesType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type ANGLES
- setAutoColumnColors() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
stacks a number of dependent variables on top of each other, their respective variable names are stored in a second variable
- setAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
-
automatically finds and sets the number of units in the space
- setBGImage(Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the Presenter that owns the Panel
- setCellValue(int, int, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets a single element for this matrix with a double
- setColLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular column label for the ContingencyTable
- setColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setColumnPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the expected probabilities for different columns
- setContinuousType() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
sets the variable to type CONTINUOUS
- setCoordMapRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the Presenter that owns the Panel
- setCustomColorRow(int, Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the custom color for a given row
- setDataFileName(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- setDataNotes(String) - Method in class com.lobsterman.JavaGrinders.BasicData
-
- setDataTimeStamp(long) - Method in class com.lobsterman.JavaGrinders.BasicData
-
- setDataValue(double) - Method in class com.lobsterman.JavaGrinders.BasicData
-
- setDefaultRowColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets default labels for row and column labels for the ContingencyTable
- setDelimiters(String) - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
sets the delimiters for the fields in the text file as a regular expression
- setDiagonal(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the diagonal of the ContingencyTable and resets all cell values
- setDirection(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
-
sets the direction of the Axis
- setFormula(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a formula for a given vector
- setFrameSize(double) - Method in class com.lobsterman.JavaGrinders.Presenter
-
scales the frame to a given screen size
- setGrid(int, Grid) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the grid used in mapping the points
- setGridInterval(double) - Method in class com.lobsterman.JavaGrinders.Grid
-
sets the grid interval for the axis
- setGridSpace3D(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the GridSpace used in mapping the points
- setHighliteColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a highlite color for the animal
- setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the highlite flag for a given row
- setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the highlited info for a row
- setHypothesisPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
sets the expected probabilities for different columns
- setImage(Image) - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
-
sets the image to display in the panel
- setLabel(String) - Method in class com.lobsterman.JavaGrinders.Descriptives
-
sets a label for the descriptives as a tag in reporting
- setLineColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a line color for the animal
- setLocationColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a location color for the animal
- setLocationsType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type LOCATIONS
- setLock(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets whether a variable is locked for further selections, modifications, etc.
- setMatrixDimensions(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new matrix dimensions for the ContingencyTable
- setMatrixSize(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the dimensions of the DominanceTable
- setMissingRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the missing flag for a given row
- setName(String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the name for the ContingencyTable
- setName(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the name of the variable to the String provided
- setNDiagonals() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the total number of cells for the ContingencyTable
- setNominalType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type NOMINAL
- setNotes(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the notes for the variable
- setNRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the number of rows for the Variable
- setNRows(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the number of rows for the VariableOrganizer
- setNUnits(int) - Method in class com.lobsterman.JavaGrinders.Grid
-
sets the number of units in the space
- setOrdinalType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type ORDINAL
- setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
sets the VariableOrganizer instance to the one provided
- setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a VariableOrganizer for the Variable
- setPlotDimensions() - Method in class com.lobsterman.JavaGrinders.Presenter
-
sets the plot dimensions
- setPresenterPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
-
sets the panel for the presenter
- setReportToConsole(boolean) - Method in class com.lobsterman.JavaGrinders.Stringer
-
controls whether oputput goes to the console
- setRowColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular column label for the ContingencyTable
- setRowLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowOrder(Vector<Object>) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the rowOrder for the variable
- setRowOrderRow(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the number of rows for the Variable
- setScalesForPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
-
creates the Panel for presenting the active data
- setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for a given row
- setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the selection info for a row
- setSelectRows(Object) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets all selected rows to a particular value
- setSelectRowsToMissing() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets all selected rows to missing
- setTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Installs a crosstabulation (i.e., frequency) table.
- setTable(InteractionTable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
Installs a crosstabulation (i.e., frequency) table that summmarizes interactions * between entities.
- setTablePs(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the expected probabilities for different columns
- setupAppFramework() - Method in class com.lobsterman.JavaGrinders.AppEngine
-
sets the video component for the tracking application, either a live video display or a movie player
- setupMenu - Variable in class com.lobsterman.JavaGrinders.AppEngine
-
- setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a general object for a given row of the Vector
- setValue(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets an integer value for a given row of the Vector
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a float value for a given row of the Vector
- setValue(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a double value for a given row of the Vector
- setValue(int, char) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a char value for a given row in the Vector
- setValue(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a boolean value for a given row of the Vector
- setVariable(Variable, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a particular variable designated by a reference number,
this corresponds to the zero-based order in which variables were
registered with the VariableOrganizer.
- setVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the design role for the variable
- setVariableDesignRole(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets a design role for a column
- setVariableDesignRoleForAll(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets a design role for every column (i.e., X, Y, label or not selected)
- setVariableFormat(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable format
- setVariableType(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable type
- setWarnings(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
-
controls whether warnings are issued
- sign() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the sign for each value of the variable
- Skewness - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- sort() - Method in class com.lobsterman.JavaGrinders.Variable
-
sorts the values for all rows using a map of hashcodes
- sort(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sorts the values for all rows using a map of hashcodes
- sort(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sorts the VariableOrganizer by the values in a variable
- sort2(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sorts the values for all rows using a map of hashcodes
- SQUAREDEUCLIDIAN - Static variable in class com.lobsterman.JavaGrinders.DataTable
-
- SSY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- stackYs() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
stacks a number of dependent variables on top of each other, their respective variable names are stored in a second variable
- StatTablePresenter - Class in com.lobsterman.JavaGrinders
-
given a DataParser object, its content is formatted automatically and
presented as a JTable object placed within a scrollpane within a frame.
- StatTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.StatTablePresenter
-
Standard constructor for the DataTablePresenter class using a VariableOrganizer
- strHeight - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
-
- STRING - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
-
- Stringer - Class in com.lobsterman.JavaGrinders
-
represents the central entity that reports results.
- Stringer() - Constructor for class com.lobsterman.JavaGrinders.Stringer
-
empty constructor
- StringVariable - Class in com.lobsterman.JavaGrinders
-
handles a variable of Strings.
- StringVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StringVariable
-
Standard constructor for the StringVariable class using a VariableOrganizer
- StrVariable - Class in com.lobsterman.JavaGrinders
-
handles a variable of Strings.
- StrVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StrVariable
-
Standard constructor for the root string Variable class using a VariableOrganizer
- subSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deselects rows that match a given object from the currently selected set of rows
- subtract(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
subtracts the constant from each value of the variable
- SumY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SumY2 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SumY3 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SumY4 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- swapRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
swaps the values in the two rows of all variables