- absolute() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
set the value to its absolute value
 
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
ActionListener interface (for menus)
 
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
 
- 
ActionListener interface (for menus)
 
- actualPs - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
-  
 
- add(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
adds the constant to each value of the variable
 
- addAnalysisMenuItems() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
 
- 
create and add an Analysis menus to the JFrame
 
- addEditMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
 
-  
 
- addFileMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
adds the file menu items
 
- addMenus() - Method in class com.lobsterman.JavaGrinders.AppEngine
 
- 
sets up menus for the tracking application
 
- addMenus() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
adds menus to the JFrame
 
- addMenus() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
 
- 
adds menus to the JFrame
 
- addSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
adds rows that match a given object to the currently selected set of rows
 
- addValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
appends a number to the end of the Variable
 
- addValue(double) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
appends a number to the end of the Variable
 
- addValue(float) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
appends a number to the end of the Variable
 
- addValue(Object) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
appends an Object to the end of the Variable
 
- analyze_nY() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
performs an analysis of multiple dependent variables
 
- analyze_nY() - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
 
- 
peforms an analysis of multiple dependent variables
 
- analyzeMultXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates analyses for multiple dependent on multiple independent variables
 
- analyzeMultY() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates analyses for multiple dependent on multiple independent variables
 
- Analyzer - Class in com.lobsterman.JavaGrinders
 
- 
Analyzer class - sets up a generic data analyzer, it does not do much aside from 
 planting the general roots for analyzers
 
- Analyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.Analyzer
 
- 
Standard constructor using a VariableOrganizer
 
- analyzeXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates univariate analyses for dependent on independent variables
 
- analyzeY() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
describes one or multiple Y columns
 
- analyzeY(Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
describes one or multiple Y columns
 
- ANGLES - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
-  
 
- append(Object[]) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
appends the variable to the end of the variable
 
- AppEngine - Class in com.lobsterman.JavaGrinders
 
- 
the main class controlling a video tracking application
 
- AppEngine(String) - Constructor for class com.lobsterman.JavaGrinders.AppEngine
 
- 
Standard constructor for the Tracker class.
 
- as2DdoubleArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the private array of data values for the ContingencyTable
 
- as2DStringArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the private array of data values for the ContingencyTable
 
- asAngleVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
return the variable as an AngleVariable with data representing angular degrees
 
- asCircularGraph(AngleVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a circular graph for the provided angles
 
- asColorHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a histogram for the provided table
 
- asColorHistogram(ContingencyTable, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a histogram for the provided table
 
- asConcatStrVariable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a new VariableOrganizer containing all variables which have been 
 selected as independent variables (i.e., VariableDesignRole.X) and all selected rows
 
- asDataTable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a DataTable of doubles for variables in the variableorganizer which have been 
 selected as dependent variables (i.e., VariableDesignRole.Y)
 
- asDoubleArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a 2D array of doubles for the variables in the variableorganizer which have been 
 selected as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or 
 nominal
 
- asHistogram() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data as a frequency histogram
 
- asHistogram(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data as a frequency histogram
 
- asHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a circular graph for the provided angles
 
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the private array of data values for the ContingencyTable
 
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a matrix for the variables in the variableorganizer which have been selected
 as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
 
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a matrix for the variables in the variableorganizer which have been selected
 as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
 
- asNormalQuantilePlot() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data
 
- asProximity() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a proximity matrix for the variables in the variableorganizer which have been selected
 as dependent variables (i.e., VariableDesignRole.Y)
 
- assertTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- asSpatialMap(CaptureVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a spatial map graph for the provided captures
 
- asSpatialMap(CaptureVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a spatial map graph for the provided captures
 
- asStringArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a 2D array of doubles for the variables in the variableorganizer which have been 
 selected as dependent variables (i.e., VariableDesignRole.Y)
 
- asTablePresenter() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
Creates a presenter from a VariableOrganizer for all the variables the organizer knows about
 
- asTimeVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
return the variable as an TimeVariable with data representing milliseconds
 
- asVariableOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the variable as a variable organizer filled with this variable
 
- asVariableOrganizerX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a new VariableOrganizer containing all variables which have been 
 selected as independent variables (i.e., VariableDesignRole.X) and all selected rows
 
- asVariableOrganizerY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a new VariableOrganizer containing all variables which have been 
 selected as dependent variables (i.e., VariableDesignRole.Y) and all selected rows
 
- asXYPlot(NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data as a scatterplot with another numeric variable
 
- asXYPlot(NumberVariable, boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data as a scatter plot with another numeric variable
 
- asXYPlot(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data as a scatter plot with another numeric variable
 
- asXYPlot(NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data as a scatterplot with another numeric variable
 
- asXYPlot(NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
Creates a presenter and plots the data as a scatterplot with another numeric variable
 
- asXYPlot(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a spatial map graph for the provided captures
 
- asXYPlot(NumberVariable, NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a spatial map graph for the provided captures
 
- asXYPlot(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a spatial map graph for the provided captures
 
- asXYPlot(NumberVariable, NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a spatial map graph for the provided captures
 
- asXYPlot(NumberVariable, NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
coordinates a JFrame with a spatial map graph for the provided captures
 
- autoExtracted - Variable in class com.lobsterman.JavaGrinders.Variable
 
-  
 
- calcContingencyResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
calculates the test of independence and returns ChiSquare and GValue
 
- calcGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
calculates the test of independence and returns ChiSquare and GValue
 
- CharVariable - Class in com.lobsterman.JavaGrinders
 
- 
handles a variable of single characters.
 
- CharVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.CharVariable
 
- 
Standard constructor for the character variable class using a VariableOrganizer
 
- checkAllUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether all rows contain valid and selected data
 
- checkDiagonal() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
does the matrix shave a diagonal?
 
- checkForColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
checks whether column probabiities have been set
 
- checkForZeros() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
checks whether any column probabiities are zero
 
- checkInOrder() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
examine whether this variables is locked
 
- checkInOrder(boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
examine whether this variables is locked
 
- checkLocked() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examine whether this variables is locked
 
- checkMatchingMatrixDimensions(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
examine whether this matrix has the same dimensions as the one provided?
 
- checkMatchingRows(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examine whether this variables has the same number of rows as the provided ContingencyTable
 
- checkMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
examines the matrix for invalid entries
 
- checkMatrix() - Method in class com.lobsterman.JavaGrinders.DataTable
 
- 
examines the matrix for invalid entries, all values may occur, so no flag is thrown
 
- checkMinimumN(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
checks whether column probabiities have been set
 
- checkMinUseRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether a minimum number rows is selected
 
- checkMinVars(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
examines whether a minimum number of variables is selected
 
- checkNumberIDs(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
checks whether there is a given number of distinct IDs present in the currently
 selected set of rows
 
- checkSameIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
checks whether two variables have identical sets of distinct IDs in the currently
 selected set of rows
 
- checkSameNRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether the variable has the same number of rows as another variable
 
- checkSameNSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether the same rows are selected as in another variable
 
- checkSameSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether the same rows are selected as in another variable
 
- checkSameSelectRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether the same rows are selected as in another variable
 
- checkSameUseRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether the same rows are selected and not missing as in another variable
 
- checkSameUseRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
examines whether the same rows are selected and not missing as in another variable
 
- checkSquare() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
is matrix square?
 
- checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
checks whether a given row is within a valid range
 
- checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
checks whether a given row is within a valid range
 
- ChiSqValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- ChiSqValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- ChiSqValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
clears all assigned design roles for the variables
 
- clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
clears all assigned design roles for the variables
 
- clearColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
clears the external probabilities
 
- clearPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
clears the external probabilities
 
- clearSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
zero the sums for rows, columns, and total of the ContingencyTable
 
- clearTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
zero the sums for all individual cells of the ContingencyTable
 
- clearTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
clears the external probabilities
 
- clearVariableDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
clears the design roles from all columns
 
- clone() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
clone the object
 
- clone() - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
clone the object
 
- clone() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
clone the object
 
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.BooleanVariable
 
- 
returns a BooleanVariable with only the selected rows
 
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.StrVariable
 
- 
returns a NumberVariable with only the selected rows
 
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a clone of the Variable with selected rows only
 
- cloneVariableFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
fills the variable as a clone of the variable
 
- colToString(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the formatted object as a string
 
- com.lobsterman.JavaGrinders - package com.lobsterman.JavaGrinders
 
-  
 
- combineSelectedWithSavedSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
combines the current set of selected rows with that set that has been saved earlier using saveSelectedRows()
 
- confirmMinXVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
checks whether there are sufficient dependent variables available
 
- confirmMinYVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
checks whether there are sufficient dependent variables available
 
- confirmOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
confirms that a VariableOrganizer is available
 
- containsZero() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns whether the space contains the zero value
 
- ContingencyAnalyzer - Class in com.lobsterman.JavaGrinders
 
- 
coordinates the analysis of contingency tables in an application.
 
- ContingencyAnalyzer(VariableOrganizer, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
Standard constructor using a VariableOrganizer
 
- ContingencyAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
Standard constructor using a VariableOrganizer, assuming that the diagonal is present
 
- ContingencyAnalyzer(ContingencyTable) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
Standard constructor, providing it with a contingency table directly
 
- ContingencyTable - Class in com.lobsterman.JavaGrinders
 
- 
contains a crosstabulation frequency table and performs a variety of statistics
 on it, including G-test, Chi-square, mantel, Kendall's Tau, etc.
 
- ContingencyTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
standard constructor for the ContingencyTable class
 
- ContingencyTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
standard constructor for the ContingencyTable class
 
- ContingencyTable(int, int, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
standard constructor for the ContingencyTable class
 
- ContingencyTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
standard constructor for the ContingencyTable class
 
- ContingencyTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
standard constructor for the ContingencyTable class
 
- ContingencyTable(double[][], boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
standard constructor for the ContingencyTable class
 
- ContingencyTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
constructor for the ContingencyTable class with a JAMA Matrix provided
 
- CONTINUOUS - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
-  
 
- ContResults - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
-  
 
- controlAnalyze_1Y1X(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates an analysis of dependent onto independent variable
 
- controlAnalyze_1YnX(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates an analysis of one dependent onto multiple independent variable.
 
- controlAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates an analysis of multiple dependent variable.
 
- controlAnalyze_nY1X(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates an analysis of multiple dependent onto one independent variable.
 
- controlAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
coordinates an analysis of multiple dependent onto multiple independent variable.
 
- ContTableResults - Class in com.lobsterman.JavaGrinders
 
- 
holds a set of results obtained for an analysis of a contingency table
 
- ContTableResults() - Constructor for class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- copyDataArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
Constructor for the ECG_Analyzer class.
 
- copyDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the descriptives for the variable
 
- copyNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns descriptive Statistic for the variable using the currently
 selected set of rows
 
- copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the select flag for all rows based on select state of another variable
 
- copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the select flag for all rows based on select state of another variable
 
- copyStringArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
Constructor for the ECG_Analyzer class.
 
- createContingencyTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- createCrossTabulationtionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- createTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- createTransitionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- customColorFromData(NumberVariable, Color) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a custom colors for all selected rows
 
- customColorSelectedRows(Color) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a custom colors for all selected rows
 
- customColorSelectedRows(Color, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a custom colors for all selected rows
 
- CV - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- dashedStroke - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
-  
 
- DataFileParser - Class in com.lobsterman.JavaGrinders
 
- 
interfaces with disk-based files.
 
- DataFileParser(String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
 
- 
standard constructor for the DataFileParser class
 
- DataFileParser(String, String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
 
- 
standard constructor for the DataFileParser class
 
- DataFileParser() - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
 
- 
constructor for the DataFileParser class if no text file name is provided
 
- DataTable - Class in com.lobsterman.JavaGrinders
 
- 
Unlike a contingency table, a data table may contain negative values (e.g.
 
- DataTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.DataTable
 
- 
standard constructor for the DataTable class
 
- DataTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
 
- 
standard constructor for the DataTable class
 
- DataTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.DataTable
 
- 
standard constructor for the DataTable class
 
- DataTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
 
- 
constructor for the DataTable class with a JAMA Matrix provided
 
- DataTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.DataTable
 
- 
standard constructor for the ContingencyTable class
 
- DataTablePresenter - Class in com.lobsterman.JavaGrinders
 
- 
given a DataParser object, its content is formatted automatically and
 presented as a JTable object placed within a scrollpane within a frame
 
- DataTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.DataTablePresenter
 
- 
Standard constructor for the DataTablePresenter class using a VariableOrganizer
 
- DATETIME - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
 
-  
 
- deleteAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
delete all rows from the Variable
 
- deleteAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
deletes all rows from all the variables that are registered with the VariableOrganizer
 
- deleteCol(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
delete a column from the VariableOrganizer
 
- deleteCols() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
delete all columns from the Organizer
 
- deleteColsNonX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
delete all non-X-selected columns from the Organizer
 
- deleteColsNonY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
delete all non-Y-selected columns from the Organizer
 
- deleteDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
deletes duplicate rows
 
- deleteMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
deletes all missing rows
 
- deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
delete all non-selected rows
 
- deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
delete all non-selected rows from the Organizer
 
- deleteRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
delete a row from the Variable
 
- deleteRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
deletes a row from all the variables that are registered with the VariableOrganizer
 
- deleteRowNoCheck(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
delete a row from the Variable without coordinating a VartiableOrganizer
 
- deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
deletes all selected rows
 
- deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
deletes all selected rows
 
- Descriptives - Class in com.lobsterman.JavaGrinders
 
- 
provides the interface for obtaining descriptive statistics from continuous
 variables.
 
- Descriptives() - Constructor for class com.lobsterman.JavaGrinders.Descriptives
 
- 
empty private constructor ensures that the only objects of this type are the elements
 enumerated above
 
- deselectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the select flag for all rows to false
 
- deselectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the select flag for all rows to false
 
- deselectRowsWithMissing() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
deselects all rows if a value is missing in any of the included variables
 
- df - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- df0 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- df1 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- df2 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- df3 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- df4 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- df5 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
-  
 
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
-  
 
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- distance(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
the absolute value after subtracting the constant from each value of the variable
 
- divide(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
divides each value of the variable by the constant
 
- doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the descriptive statistics results for a variables
 
- doAnalyze_1Y(Variable, Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from a comparison with an a-priori mean
 
- doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
lists the results from a transition analysis of the variables.
 
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one dependent variable on one independent variable
 (with 2 states).
 
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
performs a Contingency analysis (Y variable with 2 groups)
 
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
 
- 
performs a parametric analysis with one Y and one X variable (with 2 groups)
 
- doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one dependent variable on one continuous indepent
 variable.
 
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one dependent variable on one independent variable
 (with more than 2 states).
 
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
performs a Contingency analysis (Y variable with n groups)
 
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
 
- 
performs a parametric analysis with one Y and one X variable (with multiple groups)
 
- doAnalyze_1YnXcontinuous(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one dependent variable on multiple independent
 variable.
 
- doAnalyze_1YnXnGroups(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one dependent variable on multiple indepent
 variable.
 
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
performs an analysis of multiple dependent variable.
 
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
controls an analysis of multiple dependent variables
 
- doAnalyze_nY1Xcontinuous(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one dependent continuous variable on multiple indepent
 variable.
 
- doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one ordinal or nominal dependent variable on multiple indepent
 variable.
 
- doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
 
- 
lists the results from an analysis of one dependent variable on multiple indepent
 variable.
 
- doAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the results from an analysis of one dependent variable on multiple indepent
 variable.
 
- doClear() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a clear event
 
- doClose() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
 
- 
handles a close event
 
- doClose() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a close Document event
 
- doCopy() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a copy event
 
- doCorrelationAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over th intercept
 
- doCut() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a cut event
 
- doDescribeX() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
 
- 
handles the describe all X variables event
 
- doDescribeY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
 
- 
handles the describe all Y variables event
 
- doFitXY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
 
- 
handles the fit Y by X variables event
 
- doHierarchyAnalysis() - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
 
- 
reports individual ordinal ranks and a hierachy analysis for a dominance matrix
 
- DominanceTable - Class in com.lobsterman.JavaGrinders
 
- 
contains a table of dominance relationships and performs a variety of statistics
 on it, including test of linearity, ordinal ranks, etc.
 
- DominanceTable(int) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
 
- 
standard constructor for the DominanceTable class
 
- DominanceTable(int, double[][]) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
 
- 
standard constructor for the DominanceTable class
 
- doNew() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a new Document event
 
- doOpen() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles an open Document event
 
- doPaste() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a paste event
 
- doPruneClosePeaks(ArrayList<Integer>, NumberVariable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
removes the smaller peak if two are too close
 
- doRegressionAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- doRegressionAnalysis(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- doSave() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
 
- 
handles a save event
 
- doSave() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a save Document event
 
- doSaveAs() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
 
- 
handles a save as event
 
- doSaveAs() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a save as ...
 
- doSelectAll() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles a select all event
 
- doUndo() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
handles an undo event
 
- doWarnings - Variable in class com.lobsterman.JavaGrinders.Grid
 
-  
 
- DoWilliamsCorr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
calculates the William's correction
 
- drawBGImage(Graphics2D, Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
adds a background image to the panel
 
- drawFrame - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
-  
 
- drawFrame(Graphics2D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
draw a frame around the PreenterPanel's active drawing area
 
- getAbasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the instance of char stored at a given row of the Vector and converts it into
 an integer starting with 0 at a char of 'A'
 
- getabasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the instance of char stored at a given row of the Vector and converts it into
 an integer starting with 0 at a char of 'a'
 
- getANOVAResults(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the ANOVA statistics for the variable
 
- getANOVAResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the ANOVA statistics for a full factorial model
 
- getArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns an array of double values of the Vector
 
- getAutoCorrelationResults() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
obtains the Autocorrelation statistics for the variable
 
- getAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
automatically finds and sets the number of units in the space
 
- getBBSRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
 
- 
calculates a cardinal rank (BBS method) for each individual
 
- getBinMeans(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns a frequency distribution for a given set of bins
 
- getbooleanValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the value stored at a given row of the Vector as a boolean
 
- getBotLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
returns the y coordinate for labels on the bottom of the frame
 
- getBoydSilkRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
 
- 
calculates a cardinal ranks for stochastic transitivity Boyd and Silk (1983) for each individual
 
- getCell(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the double from one element of this matrix
 
- getCellValue(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the double from one element of this matrix
 
- getCentered() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns a variable containing each values relative to its mean
 
- getcharValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the instance of char stored at a given row in the Vector
 
- getColLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a particular column label for the ContingencyTable
 
- getColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns column labels for the ContingencyTable
 
- getColMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
 
- 
returns the sums for each row as a 1 dimensional Matrix
 
- getColSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the sum for a particular row of the table
 
- getColSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the row sums of the table
 
- getColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the dimensions of the Table
 
- getCombinedIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a TreeMap containing all different values found in either this variable 
 using the currently selected set of rows or in the selected rows of a second variable
 
- getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
performs a Test of Independence on the 
ContingencyTable/
 and reports the results as statistics for X2 and loglikelihood ratio.
 
 
- getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the results for a test of independence with expected frequencies calculated from observed
 
- getContingencyTableResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the results for a test of independence with the provided expected values
 
- getCoordMapRect() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
gets the Presenter that owns the Panel
 
- getCorrelationResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over th intercept
 
- getCrossTabulation(Variable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a crosstabulation of values for two variables in form of a matrix
 
- getCrossTabulation(Variable, TreeMap<Object, Integer>, TreeMap<Object, Integer>, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a crosstabulation of values for two variables in form of a matrix
 
- getCustomColorRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the custom color for a given row
 
- getDataFileName() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
-  
 
- getDataNotes() - Method in class com.lobsterman.JavaGrinders.BasicData
 
-  
 
- getDataTimeStamp() - Method in class com.lobsterman.JavaGrinders.BasicData
 
-  
 
- getDataValue() - Method in class com.lobsterman.JavaGrinders.BasicData
 
-  
 
- getDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the descriptives for the variable
 
- getdf() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the degrees of freedom for the ContingencyTable
 
- getDifferenceTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of dominance relationships between actor and receiver
 
- getDirection() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the direction of the Axis
 
- getDominanceActivityIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
 
- 
calculates a dominance activity index for each individual
 
- getDominanceIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
 
- 
calculates a dominance index for each individual
 
- getDominanceMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of dominance relationships between actor and receiver
 
- getdoubleArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns an array of double values of the Vector
 
- getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the value stored at a given row of the Vector as a double
 
- getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the value stored at a given row of the Vector as a double
 
- getdoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the value stored at a given row of the Vector as a double
 
- getExpectedMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of expected values for a test of independence
 
- getExpectedMatrix(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of expected values for a test of independence
 
- getExpMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of expected values for a test of independence
 
- getExpMatrixFromProbabilities() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of expected values for a test of independence
 
- getExpMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of expected values for a test of independence if the diagonal 
 is structurally zero
 
- getFirstDerivative(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns a variable containing each values relative to its mean
 
- getFirstLabelColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the first label variable in the VariableOrganizer
 
- getFirstXColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the first dependent (X) variable in the VariableOrganizer
 
- getFirstYColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the first dependent (Y) variable in the VariableOrganizer
 
- getfloatValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the value stored at a given row of the Vector as a float
 
- getFrequencies(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns a frequency distribution for a given set of bins
 
- getFrequencies() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the frequencies for different instances of the variable using the currently
 selected set of rows up to the specified number of maxInstances
 
- getFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns Freeman-Tukey deviates for a cell wise examination of the table
 
- getGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
coordinates a replicated goodness of fit test
 
- getGrid() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the grid in the dimension
 
- getGridInterval() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the grid interval for the axis
 
- getGridSpace3D() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
returns the GridSpace used in mapping the points
 
- getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the descriptives for the groups identified by X
 
- getGroupNs(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
returns an array of sample sizes of Ys for multiple states defined in X
 
- getHigh() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the high value
 
- getHighliteColor() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the highlite color for the animal
 
- getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns whether a given row is currently highlited.
 
- getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns whether a given row is currently highlited
 
- getHypothesisPs() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
returns the expected probabilities for different columns
 
- getIDMap() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a TreeMap containing all different values found in the variable using
 the currently selected set of rows
 
- getIDs() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a TreeMap containing all different values found in the variable using
 the currently selected set of rows
 
- getIDString(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a single entry for a key in the TreeMap as a String
 
- getIDStrings() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the keys in the TreeMap as strings
 
- getImage() - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
 
- 
returns the image to display in the panel
 
- getInteractions(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns a crosstabulation of values for two variables in form of an interaction matrix
 
- getintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the value stored at a given row of the Vector as an int
 
- getItemValues(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists the Variables registered with the VariableOrganizer
 
- getJaccard(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the Manhattan proximity measure to another variable
 
- getLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
return the currently selected set of labels
 
- getLeftLabelPos(String) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
returns the y coordinate for labels on the top of the frame
 
- getLinearityResults() - Method in class com.lobsterman.JavaGrinders.DominanceTable
 
- 
returns results from a Test of Linearity.
 
- getLineColor() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the line color for the variable
 
- getLocationColor() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the location color for the variable
 
- getlongValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the instance of long stored at a given row in the Vector
 
- getLow() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the low x
 
- getManhattan(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the Manhattan proximity measure to another variable
 
- getMantelP(ContingencyTable, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
performs Mantel's test with number of permutations limited by MaxPermutations
 
- getMantelZ(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
calculate Mantel's Z statistic for a matrix and a second matrix passed in
 
- getManWhitneyUResults(Variable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the results from an analysis of differences in mean angle distance from a hypothetical direction
 
- getMatrixSize() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the dimensions of the Table
 
- getMaxValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the maximum value stored in the Vector as a double
 
- getMaxValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of dominance relationships between actor and receiver
 
- getMeanValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the average for values stored in the Vector as a double
 
- getMinValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the minimum value stored in the Vector as a double
 
- getMinValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of dominance relationships between actor and receiver
 
- getMissingRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns whether a given row is currently missing.
 
- getMovingAverageSmoothing(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns a variable containing each values relative to its mean
 
- getMultLinRegressionResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- getName() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the dimensions of the Table
 
- getName() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the name of the Variable
 
- getNCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the total number of cells for the ContingencyTable
 
- getNCellsAboveEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the number of cells above or equal to a given value
 
- getNCellsAboveValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the number of cells above a given value
 
- getNCellsBelowEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the number of cells below or equal to a given value
 
- getNCellsBelowValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the number of cells below a given value
 
- getNCols() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the number of columns of the Table
 
- getNColumns() - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
provides read access to private variable nCols
 
- getNDataRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
returns the number of valid data rows that were read from the text file
 
- getNDiagonals() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the total number of cells for the ContingencyTable
 
- getNextSelectLabelIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the next label column after a given column
 
- getNextSelectXColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the next selected column after a given column
 
- getNextSelectYColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the next selected column after a given column
 
- getNIDs() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the number of different values present in the currently selected set of rows
 
- getNLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
how many labels are under the control of this VariableOrganizer
 
- getNMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the number of missing rows in the currently selected set
 
- getNotes() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the Notes of the Variable
 
- getNoZeroCellMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the values from the matrix with a constant of 0.25 added to each cell
 
- getNRows() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the number of rows of the Table
 
- getNRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
provides read access to private variable nRows
 
- getNRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the number of rows in the Variable
 
- getNRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the number of rows for the VariableOrganizer
 
- getNSelectRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the number of currently selected rows for the variable
 
- getNSelectRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the number of selected rows
 
- getNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the descriptive statistics for the variable and returns the results
 
- getNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the number of units in the space
 
- getNUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the number of currently selected rows for the variable which do
 not have missing values
 
- getNValidRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the number of valid rows in the currently selected set
 
- getNVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
how many variables are under the control of this VariableOrganizer
 
- getNXVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
returns the number of independent variables in the Organizer
 
- getNXVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
how many X variables are under the control of this VariableOrganizer
 
- getNYVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
returns the number of dependent variables in the Organizer
 
- getNYVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
how many Y variables are under the control of this VariableOrganizer
 
- getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.DominanceTable
 
- 
returns ordinal ranks for each individual
 
- getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
 
- 
returns individual ordinal ranks from matrix of interactions between entities.
 
- getOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
returns the VariableOrganizer instance
 
- getOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the VariableOrganizer for the Variable
 
- getOrigin() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the origin of the dimension
 
- getParser() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
-  
 
- getPeakData(ArrayList<Integer>, NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
removes the smaller peak if two are too close
 
- getPeakIntervals(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
removes the smaller peak if two are too close
 
- getPeakLocations(NumberVariable, int, float, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
from Tom O'Haver's toh@umd.edu great tutorial at
 
- getPeaksPalshikar(int, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
A standard peak detector in time series by Jean-Yves Tinevez jeanyves.tinevez@gmail.com May 10, 2011
 The goal of this class is to identify peaks in a 1D time series (float[]).
 
- getPeakTriggeredTraces(NumberVariable, ArrayList<Integer>, long) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
from Tom O'Haver's toh@umd.edu great tutorial at
 
- getPeakValues(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
removes the smaller peak if two are too close
 
- getPermutedTable(int[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
gets a variant of the interactionTable with rows and columns switched with 
 a given permutation
 
- getPropMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of expected values for proportional fitting with diagonal
 present
 
- getPropMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix of expected values for proportional fitting with diagonal
 absent (see Bishop et al., 1975; following Freeman, 1992)
 
- getProximity(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the proximity measure to another variable
 
- getProximity(Variable, int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the proximity measure to another variable
 
- getRandomValue() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the object stored at a randomly selected row of the Vector
 
- getRange() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the minimum value stored in the Vector as a double
 
- getRanks() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
return the ranks for the values in this array of the currently selected subset
 
- getRegressionResiduals(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- getRegressionResiduals(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- getRegressionResiduals(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over th intercept
 
- getRegressionResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- getRegressionResults(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- getRegressionResults(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- getReplicatedGoodnessOfFitResults(Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
 
- 
 
- getRightLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
returns the y coordinate for labels on the bottom of the frame
 
- getRowLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a particular row label for the ContingencyTable
 
- getRowLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns row labels for the ContingencyTable
 
- getRowMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
 
- 
returns the means for each row as a double array
 
- getRowNumbers() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the number of currently selected rows for the variable
 
- getRowOrder() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the row order for the Variable
 
- getRowOrderRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the row order
 
- getRowSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the sum for a particular row of the table
 
- getRowSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the row sums of the table
 
- getSDValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the average for values stored in the Vector as a double
 
- getSelectCell(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns whether a given cell of the datamatrix is currently selected
 
- getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns whether a given row is currently selected.
 
- getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns whether a given row is currently selected
 
- getSignedRank(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the signed ranks of distances to the specified value
 
- getSignedRankW(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the one-tailed sum of signed ranks
 
- getSignedRankWProbability(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the one-tailed robability of obtaining this Signed Rank W or greater
 
- getSpace() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
returns the dimension of the grid space
 
- getSquEuclidian(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the Euclidian proximity measure to another variable
 
- getStringArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the object stored at a given row of the Vector as a String
 
- getStringValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the object stored at a given row of the Vector as a String
 
- getSumValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the average for values stored in the Vector as a double
 
- getTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
returns the crosstabulation (i.e., frequency) table
 
- getTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the dimensions of the Table
 
- getTauKr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
organize a TauKr test for a correlation between actor and receiver matrix
 
- getTauKrP(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
performs the Kr test with number of permutations limited by MaxPermutations
 
- getTopLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
returns the y coordinate for labels on the top of the frame
 
- getTotalsMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a matrix in which cells from actor and receiver section
 of the ContingencyTable have been summed into a total cell value
 
- getTotalSum() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the sum for a particular row of the table
 
- getTransitions() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the transitions among consecutive values in form of a matrix
 
- gettTestResults(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
obtains the t-Test results for the variable
 
- gettValue(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the average for values stored in the Vector as a double
 
- getUseRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns whether a given row can be used.
 
- getValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the object stored at a given row of the Vector
 
- getVariable(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a particular variable designated by a reference number,
 this corresponds to the zero-based order in which variables were 
 registered with the VariableOrganizer.
 
- getVariable(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a particular variable designated by a variable name
 
- getVariableDesignRole() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the variable design role
 
- getVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns whether a given column is currently chosen as X, Y, label or not selected
 
- getVariableDesignRoleString() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the variable design role as a character string
 
- getVariableFormat() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the variable format
 
- getVariableIndex(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the index of a particular variable designated by a variable name
 
- getVariableMeans() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists the Variables registered with the VariableOrganizer
 
- getVariableNames() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
return the names of all variables
 
- getVariablePosition(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns the position in the vector for a particular variable 
 this corresponds to the zero-based order in which variables were 
 registered with the VariableOrganizer.
 
- getVariableType() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
returns the variable type
 
- getVarianceValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the average for values stored in the Vector as a double
 
- getVersion() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- getXVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
returns the first dependent variable of the Organizer
 
- getYVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
returns the first independent variable of the Organizer
 
- getYVariableNames() - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
returns the matrix of all continuous, dependent variables.
 
- getZeroCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the number of empty cells for the ContingencyTable
 
- getzQuantiles() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns a variable containing each values relative to its mean
 
- getzTransform() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns a variable containing each values relative to its mean
 
- GoodnessOfFitResults - Class in com.lobsterman.JavaGrinders
 
- 
holds a set of results obtained for an analysis of a contingency table
 
- GoodnessOfFitResults(int, int, double[], int) - Constructor for class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
- 
Standard constructor
 
- Grid - Class in com.lobsterman.JavaGrinders
 
- 
provides the interface for obtaining descriptive statistics from continuous
 variables.
 
- Grid() - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with maximum values provided
 
- Grid(double) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with maximum values provided
 
- Grid(double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with minimum and maximum values provided
 
- Grid(double, double, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with minimum and maximum values provided
 
- Grid(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with minimum and maximum values provided
 
- Grid(double, double, float, boolean) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with minimum and maximum values provided
 
- Grid(double, double, float, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with minimum and maximum values provided
 
- Grid(NumberVariable, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with minimum and maximum values provided
 
- Grid(double, double, float, boolean, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
 
- 
standard constructor for the Grid class with minimum and maximum values provided
 
- GroupAnalyzer - Class in com.lobsterman.JavaGrinders
 
- 
Analyzer class - sets up a generic data analyzer, * it does not do much aside from planting the general roots for analyzers
 
- GroupAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.GroupAnalyzer
 
- 
Standard constructor
 
- gRowHighlitedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
 
-  
 
- gRowSaveSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
 
-  
 
- gRowSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
 
-  
 
- GValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- GValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- GValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
-  
 
- label - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
-  
 
- LABEL - Static variable in class com.lobsterman.JavaGrinders.VariableDesignRole
 
-  
 
- labelGap - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
-  
 
- Landau - Variable in class com.lobsterman.JavaGrinders.LinearityResults
 
-  
 
- LinearityResults - Class in com.lobsterman.JavaGrinders
 
- 
holds a set of results obtained for an analysis of linearity applied to a 
 dominance table
 
- LinearityResults() - Constructor for class com.lobsterman.JavaGrinders.LinearityResults
 
-  
 
- list() - Method in class com.lobsterman.JavaGrinders.BasicData
 
-  
 
- list() - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
reports the descriptives for the variable
 
- list(Double) - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
reports the appropriate descriptives for comparing the variable to an external value
 
- list(Double) - Method in class com.lobsterman.JavaGrinders.NumberDescriptives
 
- 
reports the appropriate descriptives for comparing the variable to an external value
 
- listAll() - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
reports the complete set of descriptives
 
- listAll(Double) - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
reports the complete set of descriptives for comparing the variable to an external value
 
- listAllVersions() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- listBasics() - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
reports the basic descriptives for the variable
 
- listBasics() - Method in class com.lobsterman.JavaGrinders.NumberDescriptives
 
- 
reports the current values of the variables
 
- listContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
performs a Test of Independence on the 
ContingencyTable/
 and reports the results as statistics for X2 and loglikelihood ratio.
 
 
- listContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
does the test and returns its results
 
- listCorrelationResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over th intercept
 
- listDebug - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- listDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists the descriptive statistics for the variable using the currently
 selected set of rows
 
- listDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists the descriptive statistics for the variable using the currently
 selected set of rows
 
- listDescriptives() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
list descriptives for all Yvariables of the variableorganizer
 
- listDetail - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- listExpectedTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- listExpectedTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
lists a matrix of expected values
 
- listFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- listFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
lists Freeman-Tukey deviates for a cell wise examination of the table
 
- listGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
reports the results for a replicated goodness of fit test with external hypothesis probabilities
 
- listGroupDescriptives(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
lists the descriptive statistics for the groups identified by X
 
- listGroupDescriptives(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
 
- 
lists the descriptive statistics for the groups identified by X
 
- listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
lists the descriptives for the groups identified by X
 
- listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists the descriptives for the groups identified by X
 
- listGroupDescriptivesNoDia(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists the descriptives for the groups identified by X
 
- listIDs() - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
lists the frequencies for all instances of the variable using the currently
 selected set of rows
 
- listIDs(int) - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
lists the frequencies for different instances of the variable using the currently
 selected set of rows up to the specified number of maxInstances
 
- listinFileInfo() - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
report some info on the content read from the text file
 
- listinFileInfo(int, int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
report some info on the content read from the text file
 
- listLinearityResults() - Method in class com.lobsterman.JavaGrinders.DominanceTable
 
- 
lists results from a Test for Linearity.
 
- listLinearityResults() - Method in class com.lobsterman.JavaGrinders.InteractionTable
 
- 
lists results from a Test for Linearity.
 
- listMantelZResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
lists Mantel's Z for the table
 
- listMultLinRegressionResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- listOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.DominanceTable
 
- 
report ordinal ranks for each individual
 
- listPeaks(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
from Tom O'Haver's toh@umd.edu great tutorial at
 
- listRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
 
- 
list ranks for each individual
 
- listRegressionResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- listRegressionResults(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- listRegressionResults(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
fills the regression statistics for the variable with control over the intercept
 
- listReplicatedGoodnessOfFitResults(Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
 
- 
 
- listResults() - Method in class com.lobsterman.JavaGrinders.ContTableResults
 
- 
does the test and returns its results
 
- listResults() - Method in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
- 
does the test and returns its results
 
- listRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists data value for a single row
 
- listRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists data values for a single row
 
- listRowOrder(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists data values for a range of rows
 
- listRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists all data values in the variable
 
- listRows(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists all data values in the variable
 
- listRows(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists data values for a range of rows regardless of selection
 
- listRows(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists data values for a range of rows
 
- listRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists all data values in the variable
 
- listRows(boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists all data values in the variable
 
- listRows(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists data values for a range of rows
 
- listRuntimeMemory() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- listSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists data values for all selected rows in the variable
 
- listSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists data values for all selected rows in the variable
 
- listSelectState() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists for each row whether it is selected or not
 
- listSelectState(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists for a range of rows whether it is selected or not
 
- listSelectState() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists for each row whether it is selected or not
 
- listSelectState(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists for a range of rows whether it is selected or not
 
- listSigStars(double) - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
adds stars to indicate levels of significance
 
- listTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
 
- listTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
lists the table
 
- listTable(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
lists the table
 
- listTauKrResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
lists the Tau Kr for the table
 
- listTetradAnalysis(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.GroupAnalyzer
 
- 
performs an analysis of the direction of three consecutive dyadic  * interactions following Chase's jig-saw puzzle approach.
 
- listUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
lists data values for all selected rows in the variable
 
- listVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
lists the Variables registered with the VariableOrganizer
 
- listVersion() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- listWarnings - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
-  
 
- LOCATIONS - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
-  
 
- saveRowsToFile(String) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
saves all data values to a text file
 
- saveRowsToFile(int, int, boolean, String) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
saves data values for a range of rows to a text file
 
- saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
saves the select flag for all currently selected rows
 
- saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
saves the select flag for all rows
 
- saveTheContent(File) - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
 
- 
handles a save as event
 
- saveToSVGFile(String) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
saves the content of the PresenterPanel to an SVG file
 
- scaleWindow() - Method in class com.lobsterman.JavaGrinders.AppEngine
 
- 
scales the frame of the tracker to fit onto the screen.
 
- SDY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- SE - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- selectAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
select all rows with a value greater than the one provided
 
- selectAbove(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
selects all rows that contain a double value above a given double value with the option
 to select from the previous set
 
- selectAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
select all rows with a value greater or equal than the one provided
 
- selectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the select flag for all rows to true
 
- selectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the select flag for all rows to true
 
- selectBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
select all rows with a value less than the one provided
 
- selectBelow(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
selects all rows that contain a double value below a given double value with the option 
 to select from the previous set
 
- selectBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
select all rows with a value less or equal than the one provided
 
- selectDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the select flag for all duplicate rows
 
- selectEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
select all rows with a value greater or equal than the one provided
 
- selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the select flag for every nth row to true
 
- selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the select flag for every nth row to true
 
- selectRange(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
select all rows with a value between the lower and upper limits provided.
 
- selectRange(Variable, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
selects all rows that contain a double value between two given double values with
 the option from the previous set
 
- selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the select flag for all rows to true
 
- selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the select flag for all rows to true
 
- selectUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
restricts the select flag to those rows that are usable in both variables
 
- selectValue(String, boolean) - Method in class com.lobsterman.JavaGrinders.StrVariable
 
- 
select all rows with a String that matches the one provided
 
- selectValue(Object, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
selects rows that match a given object from the currently selected set of rows
 
- selectValue(Variable, Object, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
selects all rows that match a given value in a given variable with the option to select 
 from the previous set
 
- set2DArray(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets a 2D array of doubles for the ContingencyTable
 
- setAnglesType() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the variable to type ANGLES
 
- setAutoColumnColors() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
stacks a number of dependent variables on top of each other, their respective variable names are stored in a second variable
 
- setAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
automatically finds and sets the number of units in the space
 
- setBGImage(Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
sets the Presenter that owns the Panel
 
- setCellValue(int, int, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets a single element for this matrix with a double
 
- setColLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a particular column label for the ContingencyTable
 
- setColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets new row and column labels for the ContingencyTable
 
- setColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets new row and column labels for the ContingencyTable
 
- setColumnPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets the expected probabilities for different columns
 
- setContinuousType() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
sets the variable to type CONTINUOUS
 
- setCoordMapRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
sets the Presenter that owns the Panel
 
- setCustomColorRow(int, Color) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the custom color for a given row
 
- setDataFileName(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
-  
 
- setDataNotes(String) - Method in class com.lobsterman.JavaGrinders.BasicData
 
-  
 
- setDataTimeStamp(long) - Method in class com.lobsterman.JavaGrinders.BasicData
 
-  
 
- setDataValue(double) - Method in class com.lobsterman.JavaGrinders.BasicData
 
-  
 
- setDefaultRowColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets default labels for row and column labels for the ContingencyTable
 
- setDelimiters(String) - Method in class com.lobsterman.JavaGrinders.DataFileParser
 
- 
sets the delimiters for the fields in the text file as a regular expression
 
- setDiagonal(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets the diagonal of the ContingencyTable and resets all cell values
 
- setDirection(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
sets the direction of the Axis
 
- setFormula(String) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a formula for a given vector
 
- setFrameSize(double) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
scales the frame to a given screen size
 
- setGrid(int, Grid) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
sets the grid used in mapping the points
 
- setGridInterval(double) - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
sets the grid interval for the axis
 
- setGridSpace3D(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
 
- 
sets the GridSpace used in mapping the points
 
- setHighliteColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a highlite color for the animal
 
- setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the highlite flag for a given row
 
- setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the highlited info for a row
 
- setHypothesisPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
sets the expected probabilities for different columns
 
- setImage(Image) - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
 
- 
sets the image to display in the panel
 
- setLabel(String) - Method in class com.lobsterman.JavaGrinders.Descriptives
 
- 
sets a label for the descriptives as a tag in reporting
 
- setLineColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a line color for the animal
 
- setLocationColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a location color for the animal
 
- setLocationsType() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the variable to type LOCATIONS
 
- setLock(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets whether a variable is locked for further selections, modifications, etc.
 
- setMatrixDimensions(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets new matrix dimensions for the ContingencyTable
 
- setMatrixSize(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets the dimensions of the DominanceTable
 
- setMissingRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the missing flag for a given row
 
- setName(String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets the name for the ContingencyTable
 
- setName(String) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the name of the variable to the String provided
 
- setNDiagonals() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns the total number of cells for the ContingencyTable
 
- setNominalType() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the variable to type NOMINAL
 
- setNotes(String) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the notes for the variable
 
- setNRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the number of rows for the Variable
 
- setNRows(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the number of rows for the VariableOrganizer
 
- setNUnits(int) - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
sets the number of units in the space
 
- setOrdinalType() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the variable to type ORDINAL
 
- setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
 
- 
sets the VariableOrganizer instance to the one provided
 
- setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a VariableOrganizer for the Variable
 
- setPlotDimensions() - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
sets the plot dimensions
 
- setPresenterPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
sets the panel for the presenter
 
- setReportToConsole(boolean) - Method in class com.lobsterman.JavaGrinders.Stringer
 
- 
controls whether oputput goes to the console
 
- setRowColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets new row and column labels for the ContingencyTable
 
- setRowColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets new row and column labels for the ContingencyTable
 
- setRowLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
returns a particular column label for the ContingencyTable
 
- setRowLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets new row and column labels for the ContingencyTable
 
- setRowLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets new row and column labels for the ContingencyTable
 
- setRowOrder(Vector<Object>) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the rowOrder for the variable
 
- setRowOrderRow(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the number of rows for the Variable
 
- setScalesForPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
 
- 
creates the Panel for presenting the active data
 
- setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the select flag for a given row
 
- setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets the selection info for a row
 
- setSelectRows(Object) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets all selected rows to a particular value
 
- setSelectRowsToMissing() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets all selected rows to missing
 
- setTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
- 
Installs a crosstabulation (i.e., frequency) table.
 
- setTable(InteractionTable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
 
- 
Installs a crosstabulation (i.e., frequency) table that summmarizes interactions * between entities.
 
- setTablePs(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
 
- 
sets the expected probabilities for different columns
 
- setupAppFramework() - Method in class com.lobsterman.JavaGrinders.AppEngine
 
- 
sets the video component for the tracking application, either a live video display or a movie player
 
- setupMenu - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
-  
 
- setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a general object for a given row of the Vector
 
- setValue(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets an integer value for a given row of the Vector
 
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a float value for a given row of the Vector
 
- setValue(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a double value for a given row of the Vector
 
- setValue(int, char) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a char value for a given row in the Vector
 
- setValue(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets a boolean value for a given row of the Vector
 
- setVariable(Variable, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
returns a particular variable designated by a reference number,
 this corresponds to the zero-based order in which variables were 
 registered with the VariableOrganizer.
 
- setVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the design role for the variable
 
- setVariableDesignRole(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets a design role for a column
 
- setVariableDesignRoleForAll(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sets a design role for every column (i.e., X, Y, label or not selected)
 
- setVariableFormat(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the variable format
 
- setVariableType(int) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sets the variable type
 
- setWarnings(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
 
- 
controls whether warnings are issued
 
- sign() - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
returns the sign for each value of the variable
 
- Skewness - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- sort() - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sorts the values for all rows using a map of hashcodes
 
- sort(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sorts the values for all rows using a map of hashcodes
 
- sort(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
sorts the VariableOrganizer by the values in a variable
 
- sort2(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
 
- 
sorts the values for all rows using a map of hashcodes
 
- SQUAREDEUCLIDIAN - Static variable in class com.lobsterman.JavaGrinders.DataTable
 
-  
 
- SSY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- stackYs() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
stacks a number of dependent variables on top of each other, their respective variable names are stored in a second variable
 
- StatTablePresenter - Class in com.lobsterman.JavaGrinders
 
- 
given a DataParser object, its content is formatted automatically and 
 presented as a JTable object placed within a scrollpane within a frame.
 
- StatTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.StatTablePresenter
 
- 
Standard constructor for the DataTablePresenter class using a VariableOrganizer
 
- strHeight - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
-  
 
- STRING - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
 
-  
 
- Stringer - Class in com.lobsterman.JavaGrinders
 
- 
represents the central entity that reports results.
 
- Stringer() - Constructor for class com.lobsterman.JavaGrinders.Stringer
 
- 
empty constructor
 
- StringVariable - Class in com.lobsterman.JavaGrinders
 
- 
handles a variable of Strings.
 
- StringVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StringVariable
 
- 
Standard constructor for the StringVariable class using a VariableOrganizer
 
- StrVariable - Class in com.lobsterman.JavaGrinders
 
- 
handles a variable of Strings.
 
- StrVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StrVariable
 
- 
Standard constructor for the root string Variable class using a VariableOrganizer
 
- subSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
deselects rows that match a given object from the currently selected set of rows
 
- subtract(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
 
- 
subtracts the constant from each value of the variable
 
- SumY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- SumY2 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- SumY3 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- SumY4 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
-  
 
- swapRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
 
- 
swaps the values in the two rows of all variables