com.lobsterman.JavaGrinders

Class InteractionTable

java.lang.Object

com.lobsterman.JavaGrinders.ContingencyTable

com.lobsterman.JavaGrinders.InteractionTable

All Implemented Interfaces:

java.lang.Cloneable

public class InteractionTable
extends ContingencyTable
implements java.lang.Cloneable

contains a crosstabulation table of interactions between individuals and performs a variety of statistics on it, including dominance measures, reciprocity, etc.

Field Summary

Fields inherited from class com.lobsterman.JavaGrinders.ContingencyTable

diagonal, iterated, itsTotalSum, MatrixCols, MatrixRows, NUM_MAXITERATOR, PRECISIONMULT

Constructor Summary

Constructors

Constructor and Description
InteractionTable(ContingencyTable aTable) standard constructor for the InteractionTable class
InteractionTable(int MatrixSize) standard constructor for the InteractionTable class
InteractionTable(int MatrixSize, double[][] inMatrix) standard constructor for the InteractionTable class

Method Summary

Modifier and Type	Method and Description
double[]	getBBSRanks() calculates a cardinal rank (BBS method) for each individual
double[]	getBoydSilkRanks() calculates a cardinal ranks for stochastic transitivity Boyd and Silk (1983) for each individual
double[]	getDominanceActivityIndex() calculates a dominance activity index for each individual
double[]	getDominanceIndex() calculates a dominance index for each individual
double[]	getOrdinalRanks() returns individual ordinal ranks from matrix of interactions between entities.
void	listLinearityResults() lists results from a Test for Linearity.
void	listRanks() list ranks for each individual

Methods inherited from class com.lobsterman.JavaGrinders.ContingencyTable

as2DdoubleArray, as2DStringArray, asJAMAMatrix, calcContingencyResults, calcGoodnessOfFitResults, checkDiagonal, checkForColumnPs, checkForZeros, checkMatchingMatrixDimensions, checkMatrix, checkMinimumN, checkSquare, clearColumnPs, clearPs, clearSums, clearTable, clearTablePs, clone, colToString, DoWilliamsCorr, fillPerms, fillSums, fold, getCell, getCellValue, getColLabel, getColLabels, getColSum, getColSums, getColumnPs, getContingencyTableResults, getContingencyTableResults, getdf, getDifferenceTable, getDominanceMatrix, getExpectedMatrix, getExpectedMatrix, getExpMatrixDia, getExpMatrixFromProbabilities, getExpMatrixNoDia, getFTukeyDeviates, getGoodnessOfFitResults, getMantelP, getMantelZ, getMatrixSize, getMaxValueCell, getMinValueCell, getName, getNCells, getNCellsAboveEqualValue, getNCellsAboveValue, getNCellsBelowEqualValue, getNCellsBelowValue, getNCols, getNDiagonals, getNoZeroCellMatrix, getNRows, getPermutedTable, getPropMatrixDia, getPropMatrixNoDia, getRowLabel, getRowLabels, getRowSum, getRowSums, getTablePs, getTauKr, getTauKrP, getTotalsMatrix, getTotalSum, getZeroCells, howManyPossiblePermutations, incrementCellValue, invertTable, isMatchingMatrix, isSquare, listContingencyTableResults, listExpectedTable, listFTukeyDeviates, listGoodnessOfFitResults, listMantelZResults, listTable, listTable, listTauKrResults, noSumsToString, rowToString, set2DArray, setCellValue, setColLabel, setColLabels, setColLabels, setColumnPs, setDefaultRowColLabels, setDiagonal, setMatrixDimensions, setMatrixSize, setName, setNDiagonals, setRowColLabels, setRowColLabels, setRowLabel, setRowLabels, setRowLabels, setTablePs, TauKr, toFile, toString, transpose, unfold

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InteractionTable

public InteractionTable(int MatrixSize)

standard constructor for the InteractionTable class

Parameters:

MatrixSize - number of rows and columns in the table

InteractionTable

public InteractionTable(ContingencyTable aTable)
                 throws java.lang.Exception

standard constructor for the InteractionTable class

Parameters:

aTable - the data to use

Throws:

java.lang.Exception

InteractionTable

public InteractionTable(int MatrixSize,
                        double[][] inMatrix)

standard constructor for the InteractionTable class

Parameters:

MatrixSize - number of rows and columns in the table

inMatrix - 2D array of doubles to fill the table

Method Detail

getOrdinalRanks

public double[] getOrdinalRanks()
                         throws java.lang.Exception

returns individual ordinal ranks from matrix of interactions between entities.

Throws:

java.lang.Exception

getBoydSilkRanks

public double[] getBoydSilkRanks()
                          throws java.lang.Exception

calculates a cardinal ranks for stochastic transitivity Boyd and Silk (1983) for each individual

Throws:

java.lang.Exception

getBBSRanks

public double[] getBBSRanks()
                     throws java.lang.Exception

calculates a cardinal rank (BBS method) for each individual

Throws:

java.lang.Exception

getDominanceIndex

public double[] getDominanceIndex()
                           throws java.lang.Exception

calculates a dominance index for each individual

Throws:

java.lang.Exception

getDominanceActivityIndex

public double[] getDominanceActivityIndex()
                                   throws java.lang.Exception

calculates a dominance activity index for each individual

Throws:

java.lang.Exception

listRanks

public void listRanks()

list ranks for each individual

listLinearityResults

public void listLinearityResults()

lists results from a Test for Linearity. Reported are the number of circular triads, Landau's h and Kendall's tau.