JavaGrinders
Class DataTable

java.lang.Object
  JavaGrinders.ContingencyTable
      JavaGrinders.DataTable

All Implemented Interfaces:

java.lang.Cloneable

public class DataTable
extends ContingencyTable

Unlike a contingency table, a data table may contain negative values (e.g. Freeman Tukey deviates

Field Summary

static int	EUCLIDIAN
static int	MANHATTAN
static int	SQUAREDEUCLIDIAN

Fields inherited from class JavaGrinders.ContingencyTable

diagonal, iterated, itsTotalSum, MatrixCols, MatrixRows, NUM_MAXITERATOR, PRECISIONMULT

Constructor Summary

DataTable(double[][] theArray)
standard constructor for the ContingencyTable class

DataTable(int MatrixCols, int MatrixRows, boolean diagonal)
standard constructor for the DataTable class

DataTable(int MatrixCols, int MatrixRows, boolean diagonal, java.lang.String theName)
standard constructor for the DataTable class

DataTable(Matrix aMatrix, boolean diagonal)
constructor for the DataTable class with a JAMA Matrix provided

Method Summary

void	checkMatrix() examines the matrix for invalid entries, all values may occur, so no flag is thrown
ContingencyTable	invertTable() inverts the table with rows to colums and colums to rows

Methods inherited from class JavaGrinders.ContingencyTable

as2DdoubleArray, as2DStringArray, asJAMAMatrix, calcContingencyResults, calcGoodnessOfFitResults, checkForColumnPs, checkMatchingMatrixDimensions, checkSquare, clearColumnPs, clearPs, clearSums, clearTable, clearTablePs, clone, colToString, DoWilliamsCorr, fillPerms, fillSums, fold, getCellValue, getColLabel, getColLabels, getColSum, getColSums, getColumnPs, getContingencyTableResults, getContingencyTableResults, getdf, getDifferenceTable, getDominanceMatrix, getExpectedMatrix, getExpectedMatrix, getExpMatrixDia, getExpMatrixFromProbabilities, getExpMatrixNoDia, getFTukeyDeviates, getGoodnessOfFitResults, getMantelP, getMantelZ, getMatrixSize, getName, getNCells, getNCols, getNoZeroCellMatrix, getNRows, getPermutedTable, getpropMatrixDia, getpropMatrixNoDia, getRowLabel, getRowLabels, getRowSum, getRowSums, getTablePs, getTauKr, getTauKrP, getTotalsMatrix, getTotalSum, getZeroCells, howManyPossiblePermutations, incrementCellValue, isMatchingMatrix, isSquare, listContingencyResults, listExpectedTable, listFTukeyDeviates, listGoodnessOfFitResults, listMantelZResults, listTable, listTable, listTauKrResults, noSumsToString, rowToString, set2DArray, setCellValue, setColLabel, setColLabels, setColLabels, setColumnPs, setDefaultRowColLabels, setDiagonal, setMatrixDimensions, setMatrixSize, setName, setRowColLabels, setRowColLabels, setRowLabel, setRowLabels, setRowLabels, setTablePs, TauKr, toFile, toString, transpose, unfold, unfoldUpperTriangle

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

EUCLIDIAN

public static final int EUCLIDIAN

See Also:

Constant Field Values

SQUAREDEUCLIDIAN

public static final int SQUAREDEUCLIDIAN

See Also:

Constant Field Values

MANHATTAN

public static final int MANHATTAN

See Also:

Constant Field Values

Constructor Detail

DataTable

public DataTable(int MatrixCols,
                 int MatrixRows,
                 boolean diagonal,
                 java.lang.String theName)

standard constructor for the DataTable class

Parameters:

MatrixCols - number of columns in the table

MatrixRows - number of rows in the table

diagonal - does the table have a diagonal?

theName - the name of the table

DataTable

public DataTable(int MatrixCols,
                 int MatrixRows,
                 boolean diagonal)

standard constructor for the DataTable class

Parameters:

MatrixCols - number of columns in the table

MatrixRows - number of rows in the table

diagonal - does the table have a diagonal?

DataTable

public DataTable(Matrix aMatrix,
                 boolean diagonal)

constructor for the DataTable class with a JAMA Matrix provided

Parameters:

aMatrix - a JAMA matrix

diagonal - does the table have a diagonal?

DataTable

public DataTable(double[][] theArray)

standard constructor for the ContingencyTable class

Parameters:

theArray - the array to install into the Table

Method Detail

checkMatrix

public void checkMatrix()
                 throws java.lang.Exception

examines the matrix for invalid entries, all values may occur, so no flag is thrown

Overrides:

checkMatrix in class ContingencyTable

Throws:

java.lang.Exception

invertTable

public ContingencyTable invertTable()

inverts the table with rows to colums and colums to rows

Overrides:

invertTable in class ContingencyTable