- absolute() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
set the value to its absolute value
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
ActionListener interface (for menus)
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Presenter
-
ActionListener interface (for menus)
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
ActionListener interface (for menus)
- actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
-
- activateUsedChannels() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
activates the channels
- activateUsedChannels() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
activate the channels
- actualPs - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
-
- add(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
adds the constant to each value of the variable
- addAnalysisMenuItems() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
create and add an Analysis menus to the JFrame
- addChangeListener(ChangeListener) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- addConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
install a spatial constraint for the Group
- addControlDeviceOperator(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
adds a controller for a device
- addControlDeviceOperator(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
adds a controller for a device
- addDeviceOperator(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.AnalogOutTriggerProc
-
adds a device operator
- addDeviceOperator(DeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
adds a controller for a device
- addDistanceToLatLong(SpatialVector, SpatialVector) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Returns the straight-line distance (in meters) between two locations defined as longitude/latitude (in degrees)
- addEditMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
-
adds the edit menu items
- addFileMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
-
adds the file menu items
- addFrame(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
-
- addFrame(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.ImgProducer
-
- addFrame(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
adds the frame
- addHotShape(Shape) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
add shapes that define "hot" areas
- addMenus() - Method in class com.lobsterman.JavaGrinders.AppEngine
-
sets up menus for the tracking application
- addMenus() - Method in class com.lobsterman.JavaGrinders.Presenter
-
adds menus to the JFrame
- addMenus() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
adds menus to the JFrame
- addMenus() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets up menus for the tracking application
- addMove(MoveVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
makes the animal move from the last recorded position
- addPixel(int, Pixel) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
add a pixel to the Vector
- addReferenceImageEdit(ImageEdit) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
adds an image edit to the list of reference edits for the RecordProc
- addSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
adds rows that match a given object to the currently selected set of rows
- addSensorDeviceOperator(SensorDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
adds a controller for a device
- addTiledTrackingJobs(Rectangle, int, int, int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
configures the individual trackingjobs for a multicell arena
- addTiledTrackingJobs(int, Rectangle, int, int, int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
configures the individual trackingjobs for a multicell arena
- addTrackingJobSetting(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
adds a tracking job to the array
- addTrackingJobSettings(TrackingJobSetting[]) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
adds a tracking job to the array
- addValue(Object) - Method in class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
-
appends an Object to the end of the Variable
- addValue(Object) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
appends an Object to the end of the Variable
- addValue(Object) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
appends an Object to the end of the Variable
- addValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends a number to the end of the Variable
- addValue(double) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends a number to the end of the Variable
- addValue(float) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends a number to the end of the Variable
- addValue(Object) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends an Object to the end of the Variable
- adjustAnalysisRectDimensions(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
adjusts the max dimensions of the analysis rects if they extend outside the videoframe
- AggressionAnalysisProc - Class in com.lobsterman.JavaGrinders.socialModel
-
characterizes an animal as a social entity.
- AggressionAnalysisProc() - Constructor for class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
-
- AnalogOutTriggerProc - Class in com.lobsterman.JavaGrinders.control
-
the main class controlling the analysis of video frames
- AnalogOutTriggerProc(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.AnalogOutTriggerProc
-
Standard constructor for the Tracker class.
- ANALYSIS - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- analysisButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- analysisMenu - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- AnalysisProc - Class in com.lobsterman.JavaGrinders.spatial
-
the main class controlling the invocation of analyses in the model
- AnalysisProc() - Constructor for class com.lobsterman.JavaGrinders.spatial.AnalysisProc
-
- analysisRunning - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- analysisStart - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- analyze() - Method in class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
-
Empty constructor for the Animal class
- analyze(int, int) - Method in class com.lobsterman.JavaGrinders.spatial.AnalysisProc
-
performs the basic time management needed for AnalysisProcs, call this method
from your subclass
- analyze2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
lists the results from an analysis of differences in mean direction
- analyze_nY() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs an analysis of multiple dependent variables
- analyze_nY() - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
-
performs an analysis of multiple dependent variables
- analyzeMultXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates analyses for multiple dependent on multiple independent variables
- analyzeMultY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates analyses for multiple dependent on multiple independent variables
- analyzeNGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
lists the results from an analysis of differences in mean direction
- Analyzer - Class in com.lobsterman.JavaGrinders
-
Analyzer class - sets up a generic data analyzer, it does not do much aside from
planting the general roots for analyzers
- Analyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.Analyzer
-
Standard constructor using a VariableOrganizer
- analyzeXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates univariate analyses for dependent on independent variables
- analyzeY() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
describes one or multiple Y columns
- analyzeY(Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
describes one or multiple Y columns
- AngleConfInt95 - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- AngleConfInt99 - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- ANGLES - Static variable in class com.lobsterman.JavaGrinders.VariableType
-
- AngleSDRad - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- AngleVariable - Class in com.lobsterman.JavaGrinders.spatial
-
handles things that a general variable containing angles
should do or know about.
- AngleVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
Standard constructor for the root number Variable class using a VariableOrganizer
- AngleVarRad - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- ANOVAResults - Class in com.lobsterman.JavaGrinders.parametric
-
provides the interface for obtaining statistics for a 1-way ANOVA
- ANOVAResults(int) - Constructor for class com.lobsterman.JavaGrinders.parametric.ANOVAResults
-
empty constructor
- apertureTimes_MSLifecamStudio - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- app - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
-
- append(Object[]) - Method in class com.lobsterman.JavaGrinders.Variable
-
appends the variable to the end of the variable
- appendString(String) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
appends a given String to the pre-existing text for the cell
- AppEngine - Class in com.lobsterman.JavaGrinders
-
the main class controlling a video tracking application
- AppEngine(String) - Constructor for class com.lobsterman.JavaGrinders.AppEngine
-
Standard constructor for the Tracker class.
- applyAlpha(BufferedImage, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
This method returns an BufferedImage after applying an alpha (transparency) to it
- applyFilter(Mat) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
applies a filter to the Mat
- applyMove(MoveVector) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
Returns the coordinates of this Capture after a Move has been applied to it
- applyRandomMoveFromDistribution(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
generates a single move from a Distribution of Moves
- applyVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the coordinates of the Location after a Move has been applied to it
- applyVector(PolarVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the coordinates of the Location after a Move has been applied to it
- Arduino - Class in com.lobsterman.JavaGrinders.control
-
the main class that represents an interface for external devices
- Arduino(String) - Constructor for class com.lobsterman.JavaGrinders.control.Arduino
-
standard constructor for the Arduino class
- ArduinoInterface - Class in com.lobsterman.JavaGrinders.control
-
the main class that represents an interface for external devices
- ArduinoInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
standard constructor for the ArduinoInterface class
- area2(GrahamPt2D, GrahamPt2D, GrahamPt2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Returns twice the signed area of the triangle a-b-c.
- Arena - Class in com.lobsterman.JavaGrinders.spatial
-
implements an spatially explicit stage for the modelling
- Arena(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Arena
-
Constructor with the low and high borders for x, y and z provided
- Arena(double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Arena
-
Constructor with the low and high borders for x, y and z provided
- ARGBColorToInt(int, int, int, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
Assembles a RGB color int from individual color values
- arrayLeftDivide(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Element-by-element left division, C = A.\B
- arrayLeftDivideEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Element-by-element left division in place, A = A.\B
- arrayRightDivide(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Element-by-element right division, C = A./B
- arrayRightDivideEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Element-by-element right division in place, A = A./B
- arrayTimes(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Element-by-element multiplication, C = A.*B
- arrayTimesEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Element-by-element multiplication in place, A = A.*B
- as2DdoubleArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the private array of data values for the ContingencyTable
- as2DStringArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the private array of data values for the ContingencyTable
- asAngleVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
return the variable as an AngleVariable with
data representing angular degrees
- asCircularGraph(AngleVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a circular graph for the provided angles
- asCircularGraph() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
Creates a presenter and plots the movement vectors as a circular graph
- asCircularGraph() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
Creates a circular presenter
- asCircularGraph(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
Creates a circular presenter
- asCircularGraph() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
Creates a presenter and plots the movement vectors as a circular graph
- asColorHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a histogram for the provided table
- asColorHistogram(ContingencyTable, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a histogram for the provided table
- asConcatStrVariable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a new VariableOrganizer containing all variables which have been
selected as independent variables (i.e., VariableDesignRole.X)
and all selected rows
- asDataTable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a DataTable of doubles for variables in the variableorganizer which have been
selected as dependent variables (i.e., VariableDesignRole.Y)
- asDoubleArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a 2D array of doubles for the variables in the variableorganizer which have been
selected as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or
nominal
- asHistogram() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a frequency histogram
- asHistogram(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a frequency histogram
- asHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a circular graph for the provided angles
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the private array of data values for the ContingencyTable
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a matrix for the variables in the variableorganizer which have been selected
as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
- asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a matrix for the variables in the variableorganizer which have been selected
as dependent variables (i.e., VariableDesignRole.Y) and
which are ordinal or nominal
- asNormalQuantilePlot() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data
- asPath() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the coordinates as a Path2D object
- asPoint() - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
-
returns the info for the pixel as a Point
- asProximity() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a proximity matrix for the variables in the variableorganizer which have been selected
as dependent variables (i.e., VariableDesignRole.Y)
- assertTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- asSGPolygon() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the path as a polygon
- asSpatialMap(CaptureVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asSpatialMap(CaptureVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asSpatialMap() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
Creates a presenter and plots the locations
- asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
Creates a presenter and plots the locations
- asSpatialMap(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
Creates a presenter and plots the locations
- asSpatialMap(int, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
Creates a presenter and plots the locations
- asSpatialMap() - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
Creates a presenter and plots the locations
- asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
Creates a presenter and plots the locations
- asSpatialMap(GridSpace3D, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
Creates a presenter and plots the locations
- asSpatialMap() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
Creates a presenter and plots the locations
- asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
Creates a presenter and plots the locations
- asSpatialMap() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
Creates a presenter and plots the locations
- asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
Creates a presenter and plots the locations
- asSpatialMap(GridSpace3D, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
Creates a presenter and plots the locations
- asStringArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a 2D array of doubles for the variables in the variableorganizer which have been
selected as dependent variables (i.e., VariableDesignRole.Y)
- asTablePresenter() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
Creates a presenter from a VariableOrganizer for all the
variables the organizer knows about
- asTimeVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
return the variable as an TimeVariable with
data representing milliseconds
- asVariableOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable as a variable organizer filled with this variable
- asVariableOrganizerX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a new VariableOrganizer containing all variables which have been
selected as independent variables (i.e., VariableDesignRole.X)
and all selected rows
- asVariableOrganizerY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a new VariableOrganizer containing all variables which have been
selected as dependent variables (i.e., VariableDesignRole.Y)
and all selected rows
- asXYPlot(NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatterplot with another numeric variable
- asXYPlot(NumberVariable, boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatter plot with another numeric variable
- asXYPlot(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatter plot with another numeric variable
- asXYPlot(NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatterplot with another numeric variable
- asXYPlot(NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
Creates a presenter and plots the data as a scatterplot with another numeric variable
- asXYPlot(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(NumberVariable, NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(NumberVariable, NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- asXYPlot(NumberVariable, NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
-
coordinates a JFrame with a spatial map graph for the provided captures
- ATAN2_ORDER - Variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Compares two points by atan2() angle (between -pi and pi) with respect to this point.
- attached - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- attacker - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
-
- audioBeeper - Variable in class com.lobsterman.JavaGrinders.control.TriggerProc
-
- AudioInterface - Class in com.lobsterman.JavaGrinders.control
-
the main class that represents an interface for external devices
- AudioInterface() - Constructor for class com.lobsterman.JavaGrinders.control.AudioInterface
-
standard constructor for the AudioInterface class for a right and left channel
- AudioInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.AudioInterface
-
standard constructor for the DeviceInterface class
- autoColorTraces() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
reset the sensor traces
- autoExtracted - Variable in class com.lobsterman.JavaGrinders.Variable
-
- AUTOSETUP - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- available() - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
-
- AVIProducer - Class in com.lobsterman.JavaGrinders.Tracker
-
the main class controlling a video generator
- AVIProducer(File, int, int, long) - Constructor for class com.lobsterman.JavaGrinders.Tracker.AVIProducer
-
Constructor for the AVIProducer class.
- calcContingencyResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculates the test of independence and returns ChiSquare and GValue
- calcGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculates the test of independence and returns ChiSquare and GValue
- cameraCounter - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- camSettings - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- Capture - Class in com.lobsterman.JavaGrinders.spatial
-
characterizes a single Capture with a capture location (as x, y, z coordinates)
and a time stamp for the time of capture
- Capture() - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
empty constructor for the Capture class
- Capture(double, double, double, long) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
standard constructor for the 3D Capture class with coordinates and time provided
- Capture(double, double, Date) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
standard constructor for the 3D Capture class with coordinates and time provided
- Capture(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
constructor for the Capture class with coordinates provided
- Capture(double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
constructor for the Capture class with coordinates provided
- Capture(SpatialVector) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
constructor for the Capture class with coordinates provided as a SpatialVector
- Capture(SpatialVector, Date) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
constructor for the Capture class with coordinates and time provided
- Capture(SpatialVector, long) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
constructor for the Capture class with coordinates and time provided
- Capture(double, double, double, Date) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
-
standard constructor for the 3D Capture class with coordinates and time provided
- CaptureVariable - Class in com.lobsterman.JavaGrinders.spatial
-
handles a variable of Captures (capture localities and time of capture).
- CaptureVariable() - Constructor for class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
empty constructor for the CaptureVariable class using a VariableOrganizer
- CaptureVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
Standard constructor for the CaptureVariable class using a VariableOrganizer
- ccw(GrahamPt2D, GrahamPt2D, GrahamPt2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Is a-b-c a counterclockwise turn?
- Cell - Class in com.lobsterman.JavaGrinders.Applets
-
manages individual cells of a table, with dimensions and Capture, alignment
and size of text, and colors.
- Cell(int, int, Double) - Constructor for class com.lobsterman.JavaGrinders.Applets.Cell
-
standard constructor to initialize the cell with a set of values
- Cell(FrequencyMatrixApplet, Color, Color, boolean, int, int, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Applets.Cell
-
standard constructor to initialize the cell with a set of values
- Cell3D - Class in com.lobsterman.JavaGrinders.Applets
-
extends cells with a 3D-like appearance
- Cell3D(FrequencyMatrixApplet, Color, Color, boolean, int, int, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Applets.Cell3D
-
standard constructor to initialize the cell with a set of values
- CellAlignment - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
-
- CellMatrix - Class in com.lobsterman.JavaGrinders.Applets
-
coordinates a set of visual cells with data contained in a ContingencyTable
- CellMatrix(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.Applets.CellMatrix
-
standard constructor for the CellMatrix class
- CellType - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
-
- CENTER - Static variable in class com.lobsterman.JavaGrinders.Applets.Cell
-
- centered - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
-
- centerLocation - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
- centroid() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
- channel - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
-
- ChannelAccess_DIRECT - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- ChannelAccess_EVENTS - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- ChannelAccess_NONE - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- channels - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
- channelsOn - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- CharVariable - Class in com.lobsterman.JavaGrinders
-
handles a variable of single characters.
- CharVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.CharVariable
-
Standard constructor for the character variable class using a VariableOrganizer
- checkAllUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether all rows contain valid and selected data
- checkConnectedCoords() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
assures that coordinates are connected
- checkDiagonal() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
does the matrix have a diagonal?
- checkForColor() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
checks to make sure that color is available
- checkForColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
checks whether column probabilities have been set
- checkForG2(Graphics2D) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
confirms that the G2 graphics port is active and can be drawn into
- checkForGray() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
checks to make sure that gray is available
- checkForZeros() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
checks whether any column probabiities are zero
- checkHost(String) - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
-
- checkHosts(String) - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
-
- checkInOrder() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
examine whether this variables is locked
- checkInOrder(boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
examine whether this variables is locked
- checkLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
assures that coordinates are latitude and longitude
- checkLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
assures that coordinates are latitude and longitude
- checkLocked() - Method in class com.lobsterman.JavaGrinders.Variable
-
examine whether this variables is locked
- checkMatchingMatrixDimensions(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
examine whether this matrix has the same dimensions as the one provided?
- checkMatchingRows(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examine whether this variables has the same number of rows as the provided ContingencyTable
- checkMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
examines the matrix for invalid entries
- checkMatrix() - Method in class com.lobsterman.JavaGrinders.DataTable
-
examines the matrix for invalid entries, all values may occur, so no flag is thrown
- checkMatrixParamters(int, boolean) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
checks whether the matrix is square
- checkMinimumN(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
checks whether enough data points are included
- checkMinPoints(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
examines whether a minimum number points are available
- checkMinUseRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether a minimum number rows is selected
- checkMinVars(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
examines whether a minimum number of variables is selected
- checkNumberIDs(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
checks whether there is a given number of distinct IDs present in the currently
selected set of rows
- checkNumChannels(int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
checks to make sure that there are a minimum number of channels available
- checkSameIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
checks whether two variables have identical sets of distinct IDs in the currently
selected set of rows
- checkSameNRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the variable has the same number of rows as another variable
- checkSameNSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected as in another variable
- checkSameSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected as in another variable
- checkSameSelectRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected as in another variable
- checkSameUseRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected and not missing as in another variable
- checkSameUseRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
-
examines whether the same rows are selected and not missing as in another variable
- checkSquare() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
check whether matrix is square
- checkTimesInOrder() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
assures that coordinate times are in order
- checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
checks whether a given row is within a valid range
- checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
checks whether a given row is within a valid range
- checkValidTargets(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
lists the TargetCaptureData
- ChiSquare - Class in com.lobsterman.JavaGrinders.Utilities
-
- ChiSquare() - Constructor for class com.lobsterman.JavaGrinders.Utilities.ChiSquare
-
- ChiSqValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- ChiSqValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- ChiSqValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- chol() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Cholesky Decomposition
- CholeskyDecomposition - Class in com.lobsterman.JavaGrinders.Jama
-
Cholesky Decomposition.
- CholeskyDecomposition(Matrix) - Constructor for class com.lobsterman.JavaGrinders.Jama.CholeskyDecomposition
-
Cholesky algorithm for symmetric and positive definite matrix.
- CIhigh - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- CIlow - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- circDispersion - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- CircularAnalyzer - Class in com.lobsterman.JavaGrinders.spatial
-
coordinates the analysis of directional data in an application.
- CircularAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
Standard constructor using a VariableOrganizer
- CircularDescriptives - Class in com.lobsterman.JavaGrinders.spatial
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- CircularDescriptives() - Constructor for class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
empty constructor ensures that the only objects of this type are the elements
enumerated above
- CircularGraphPresenterPanel - Class in com.lobsterman.JavaGrinders.spatial
-
a presenter for circular graphs placed within a scrollpane within a frame.
- CircularGraphPresenterPanel() - Constructor for class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
-
Standard constructor for the CircularGraphPresenterPanel class
- clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
clears all assigned design roles for the variables
- clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
clears all assigned design roles for the variables
- clearCell() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
sets string content to empty and its number value to 0
- clearCells() - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
-
clears the cells
- clearColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clears the external probabilities
- clearContent() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
clears the fields and expected cells
- clearFields() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
clears the various fields
- clearPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clears the external probabilities
- clearSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
zero the sums for rows, columns, and total of the ContingencyTable
- clearTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
zero the sums for all individual cells of the ContingencyTable
- clearTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clears the external probabilities
- clearVariableDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
clears the design roles from all columns
- CLIInterface - Class in com.lobsterman.JavaGrinders.control
-
the main class that represents an interface for a command line (SSH)
- CLIInterface(Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.CLIInterface
-
- clone() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.Descriptives
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Clone the Matrix object.
- clone(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
Returns a deep copy of the image
- clone() - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.spatial.MapDimensions
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
clone the object
- clone() - Method in class com.lobsterman.JavaGrinders.Variable
-
clone the object
- cloneEmpty() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a clone of the Variable with selected rows only
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.BooleanVariable
-
returns a BooleanVariable with only the selected rows
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns a copy of the CaptureVariable containing only the selected rows
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.StrVariable
-
returns a NumberVariable with only the selected rows
- cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a clone of the Variable with selected rows only
- cloneVariableFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
fills the variable as a clone of the variable
- close() - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
closes the device
- close() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
closes the interface
- close() - Method in class com.lobsterman.JavaGrinders.control.CLIInterface
-
closes the interfaces
- close() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
closes the interfaces
- close() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
-
closes the interface
- close() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
closes the i2c hardware
- close() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
-
closes the interface
- close() - Method in class com.lobsterman.JavaGrinders.control.NetworkInterface
-
closes the interfaces
- close() - Method in class com.lobsterman.JavaGrinders.control.OSCInterface
-
closes the interfaces
- close() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
closes the interface
- close(Exception) - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
-
close the signal generator
- close() - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
-
- close() - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
closes the producer
- close_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
closes the FTDI
- close_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
closes the LinkM
- closeDeviceHandle(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- closeEventInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
close the event interface
- closeEventInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
close the event interface
- closeUVCDevice(Pointer<UvcLibrary.uvc_device>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- color - Variable in class com.lobsterman.JavaGrinders.Tracker.ImageEdit
-
- Color_magenta - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- colorCodeSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
obtains the speed statistics for the variable using the currently
selected set of rows and color codes the rows with it
- colorDominanceCells() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
-
sets the color of the cells of the dominance matrix, dominant - green; subordinate - blue
- ColorDown - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- COLORLABEL - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
- colorModel - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- colorRamp(float[], int, int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
sets up the ramping of the color
- ColorsDialog - Class in com.lobsterman.JavaGrinders.VisualStimulus
-
- ColorsDialog(VisualStimulusGenerator) - Constructor for class com.lobsterman.JavaGrinders.VisualStimulus.ColorsDialog
-
- ColorToBlack - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- colorToHex(Color) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Utility method to convert a Color into a KML color ref
- ColorToWhite - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- ColorUp - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- ColorUtilities - Class in com.lobsterman.JavaGrinders.Utilities
-
- ColorUtilities() - Constructor for class com.lobsterman.JavaGrinders.Utilities.ColorUtilities
-
- cols - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
- colToString(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the formatted object as a string
- com.lobsterman.JavaGrinders - package com.lobsterman.JavaGrinders
-
- com.lobsterman.JavaGrinders.Applets - package com.lobsterman.JavaGrinders.Applets
-
- com.lobsterman.JavaGrinders.control - package com.lobsterman.JavaGrinders.control
-
- com.lobsterman.JavaGrinders.Instruments - package com.lobsterman.JavaGrinders.Instruments
-
- com.lobsterman.JavaGrinders.Jama - package com.lobsterman.JavaGrinders.Jama
-
- com.lobsterman.JavaGrinders.parametric - package com.lobsterman.JavaGrinders.parametric
-
- com.lobsterman.JavaGrinders.RHUtilities - package com.lobsterman.JavaGrinders.RHUtilities
-
- com.lobsterman.JavaGrinders.socialModel - package com.lobsterman.JavaGrinders.socialModel
-
- com.lobsterman.JavaGrinders.spatial - package com.lobsterman.JavaGrinders.spatial
-
- com.lobsterman.JavaGrinders.Tracker - package com.lobsterman.JavaGrinders.Tracker
-
- com.lobsterman.JavaGrinders.Utilities - package com.lobsterman.JavaGrinders.Utilities
-
- com.lobsterman.JavaGrinders.VisualStimulus - package com.lobsterman.JavaGrinders.VisualStimulus
-
- combineSelectedWithSavedSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
combines the current set of selected rows with that set that has been saved earlier using saveSelectedRows()
- commentPanel1 - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- compare(SpatialVector, SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
- compare(TargetCaptureData, TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
defines sortorder relative to another object
- compareTo(GrahamPt2D) - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Compares this point to that point by y-coordinate, breaking ties by x-coordinate.
- completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
-
fill all the remaining terms once the sums are filled
- completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.MultRegressionResults
-
fill all the remaining terms once the sums are filled
- completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
fill all the remaining terms once the sums are filled
- completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
fill all the remaining terms once the sums are filled
- completeCalculations() - Method in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
fill all the remaining terms once the sums are filled
- completeInterface() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
complete the interface for an Arduino
- completeInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
complete the interface to a Phidget
- completeInterface() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
-
complete the interface for the FTDI
- completeInterface() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
-
complete the interface to a Phidget
- completeInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
complete the interface to a Phidget
- completeSummaryFit() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
fill all the remaining terms for the summary of fit
- completeTableTerms() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
fill all the remaining table terms
- comps - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- comps_mag - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- cond() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Matrix condition (2 norm)
- cond() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
-
Two norm condition number
- configure(int, int, long) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
configure the AVIProducer class.
- configureVideoSource() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
configure the source of video frames
- confirmArduinoHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
confirms thqt the Interface controls an Arduino
- confirmBufferSize(byte[], int, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns whether the integer is an even number
- confirmChannelRange(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
tests for the controller being in the available range of device IDs
- confirmElements(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
-
confirms the validity of the setup for rendering
- confirmInputCapable() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
confirms that the interface contains output channels
- confirmInterface() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
confirms that the controller has an interface
- confirmInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
-
confirms that the controller has an interface
- confirmMinNChannels(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
tests for a minimum number of available channel IDs
- confirmMinXVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
checks whether there are sufficient dependent variables available
- confirmMinYVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
checks whether there are sufficient dependent variables available
- confirmOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
confirms that a VariableOrganizer is available
- confirmOutputCapable() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
confirms that the interface contains output channels
- confirmPhidgetHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
confirms thqt the Interface controls a Phidget
- confirmPositionInValidRange(double) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
confirms that a setting is within the valid range
- confirmReferenceAvailable() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
assures that a reference frame is available
- confirmValidBuffer(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
confirms that the byte buffer is not empty
- Constraint - Class in com.lobsterman.JavaGrinders.spatial
-
implements the spatially explicit stage for the modelling
- Constraint(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
-
constructor with the Dimensions provided
- Constraint() - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
-
empty constructor
- Constraint(double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
-
constructor with the Dimensions provided
- Constraint(GridSpace3D) - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
-
constructor with the Dimensions provided
- constructWithCopy(double[][]) - Static method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Construct a matrix from a copy of a 2-D array.
- contains(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns whether the GridSpace3D contains a SpatialVector
- contains(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns whether the GridSpace3D contains another GridSpace3D
- contains(Point2D.Double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns whether the GridSpace3D contains a Point2D
- contains(Rectangle2D, Rectangle2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Checks, whether the given rectangle1 fully contains rectangle 2
(even if rectangle 2 has a height or width of zero!).
- containsPlus(Point2D) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
checks whether the Polygon contain the point p0? if p is on boundary then 0 or 1 is returned, and p
is in exactly one point of every partition of plane.
- containsZero() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns whether the space contains the zero value
- ContingencyAnalyzer - Class in com.lobsterman.JavaGrinders
-
coordinates the analysis of contingency tables in an application.
- ContingencyAnalyzer(VariableOrganizer, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Standard constructor using a VariableOrganizer
- ContingencyAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Standard constructor using a VariableOrganizer, assuming that the diagonal is present
- ContingencyAnalyzer(ContingencyTable) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Standard constructor, providing it with a contingency table directly
- ContingencyTable - Class in com.lobsterman.JavaGrinders
-
contains a crosstabulation frequency table and performs a variety of statistics
on it, including G-test, Chi-square, mantel, Kendall's Tau, etc.
- ContingencyTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(int, int, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(double[]) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class which installs values into column 1
- ContingencyTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(double[][], boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
standard constructor for the ContingencyTable class
- ContingencyTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
-
constructor for the ContingencyTable class with a JAMA Matrix provided
- CONTINUOUS - Static variable in class com.lobsterman.JavaGrinders.VariableType
-
- contrChannelsInUse - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- ContResults - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
-
- controlAllDevices(Capture) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
controls all devices
- controlAnalyze_1Y1X(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of dependent onto independent variable
- controlAnalyze_1YnX(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of one dependent onto multiple independent variable.
- controlAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of multiple dependent variable.
- controlAnalyze_nY1X(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of multiple dependent onto one independent variable.
- controlAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
coordinates an analysis of multiple dependent onto multiple independent variable.
- ControlDesignType - Class in com.lobsterman.JavaGrinders.control
-
ControlDesignType class - specifies the datatype that best characterizes the variable
- ControlDesignType() - Constructor for class com.lobsterman.JavaGrinders.control.ControlDesignType
-
empty private constructor ensures that the variables are enumerated
- controlDevice(Capture) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
control the device depending on object location
- controlDeviceFromSchedule(int, TimeVariable, boolean) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
controls a device from a schedule
- ControlDeviceOperator - Class in com.lobsterman.JavaGrinders.control
-
the main class controlling something
- ControlDeviceOperator() - Constructor for class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
standard constructor for the DeviceController class
- ControlDeviceOperator(int) - Constructor for class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
standard constructor for the DeviceController class
- controlPanelHeight - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
- controls - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- ContTableResults - Class in com.lobsterman.JavaGrinders
-
holds a set of results obtained for an analysis of a contingency table
- ContTableResults() - Constructor for class com.lobsterman.JavaGrinders.ContTableResults
-
- copy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Make a deep copy of a matrix
- copy(PolarVector) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
copy other vector into this one
- copy(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
copy other vector into this one
- copyCircularDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns descriptive Circular Statistic for the variable using the currently
selected set of rows
- copyDataArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
copy the data array
- copyDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the descriptives for the variable
- copyMatrixSumsToCells() - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
-
recalculates the sums around the data matrix
- copyMatrixToCells() - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
-
fills the cells with the values from the data matrix
- copyNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns descriptive Statistic for the variable using the currently
selected set of rows
- copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows based on select state of another variable
- copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows based on select state
of another variable
- copySpatialDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
fills the descriptive statistics for the variable and returns the results
- copyStringArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
copy the data array
- copyWithAlpha(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
Returns a deep copy of the image
- CorrelationResults - Class in com.lobsterman.JavaGrinders.parametric
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- CorrelationResults() - Constructor for class com.lobsterman.JavaGrinders.parametric.CorrelationResults
-
empty constructor
- cos2Sum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- cosMean - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- cosSum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- countBlackPixels(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
counts how many pixels are black.
- countNEq(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
find the number of angles that are between or equal the two angles in a clockwise direction
- countNLe(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
find the number of angles that are between or equal the two angles in a clockwise direction
- createContingencyTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- createCrossTabulationtionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- createDiagonalCross(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Creates a diagonal cross shape.
- createDiamond(float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Creates a diamond shape.
- createDownTriangle(float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Creates a triangle shape that points downwards.
- createLineRegion(Line2D, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Creates a region surrounding a line segment by 'widening' the line
segment.
- createModalProgressMonitor(Component, int, boolean, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressUtils
-
- createRegularCross(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Creates a diagonal cross shape.
- createRootPane() - Method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
-
- createTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- createTransitionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- createTranslatedShape(Shape, double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Creates and returns a translated shape.
- createUpTriangle(float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Creates a triangle shape that points upwards.
- cross(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Calculates the cross product of this vector and the one passed to it.
- currentTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- currentValue - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
-
- currSampleTime - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- CustomCameraDialog - Class in com.lobsterman.JavaGrinders.Tracker
-
- CustomCameraDialog(JFrame, Pointer<UvcLibrary.uvc_device_handle>) - Constructor for class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
-
- customColorFromData(NumberVariable, Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a custom colors for all selected rows
- customColorSelectedRows(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a custom colors for all selected rows
- customColorSelectedRows(Color, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a custom colors for all selected rows
- customFillColor10_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor10_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor10_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor1_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor1_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor1_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor2_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor2_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor2_mag - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor2_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor3_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor3_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor3_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor4_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor4_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor4_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor5_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor5_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor5_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor6_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor6_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor6_mag - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor6_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor7_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor7_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor7_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor8_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor8_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor8_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor9_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor9_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- customFillColor9_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- CV - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- cyclesPerSec - Variable in class com.lobsterman.JavaGrinders.control.SineWaveGenerator
-
- DARKOBJECT - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
- dashedStroke - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
-
- DataChannelDescriptor - Class in com.lobsterman.JavaGrinders.control
-
the main class for the settings of the data channel
- DataChannelDescriptor(int) - Constructor for class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
standard constructor for the DeviceOperator class
- DataChannelDescriptor(int, int, int) - Constructor for class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
standard constructor for the DeviceOperator class
- DataFileParser - Class in com.lobsterman.JavaGrinders
-
interfaces with disk-based files.
- DataFileParser(String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
-
standard constructor for the DataFileParser class
- DataFileParser(String, String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
-
standard constructor for the DataFileParser class
- DataFileParser() - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
-
constructor for the DataFileParser class if no text file name is provided
- DataTable - Class in com.lobsterman.JavaGrinders
-
Unlike a contingency table, a data table may contain negative values (e.g.
- DataTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the DataTable class
- DataTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the DataTable class
- DataTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the DataTable class
- DataTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
constructor for the DataTable class with a JAMA Matrix provided
- DataTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.DataTable
-
standard constructor for the ContingencyTable class
- DataTablePresenter - Class in com.lobsterman.JavaGrinders
-
given a DataParser object, its content is formatted automatically and
presented as a JTable object placed within a scrollpane within a frame
- DataTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.DataTablePresenter
-
Standard constructor for the DataTablePresenter class using a VariableOrganizer
- DataValue - Class in com.lobsterman.JavaGrinders.control
-
the main class that represents an data value from an analog sensing channel
- DataValue(long, int, float) - Constructor for class com.lobsterman.JavaGrinders.control.DataValue
-
standard constructor for the DataValue class
- DATETIME - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
-
- datVal - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- defPixelFormat - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- defVideoHeight - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
- defVideoRect - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
- defVideoWidth - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
- deleteAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
delete all rows from the Variable
- deleteAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deletes all rows from all the variables that are registered
with the VariableOrganizer
- deleteCol(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete a column from the VariableOrganizer
- deleteCols() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all columns from the Organizer
- deleteColsNonX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all non-X-selected columns from the Organizer
- deleteColsNonY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all non-Y-selected columns from the Organizer
- deleteDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
deletes duplicate rows
- deleteMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
deletes all missing rows
- deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
delete all non-selected rows
- deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
delete all non-selected rows from the Organizer
- deleteRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
delete a row from the Variable
- deleteRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deletes a row from all the variables that are registered with the VariableOrganizer
- deleteRowNoCheck(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
delete a row from the Variable without coordinating a VartiableOrganizer
- deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
deletes all selected rows
- deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deletes all selected rows
- deleteTrackingJobSetting(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
returns a specific tracking jobs
- densForward - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
-
- DENSITY_AREA - Static variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
- DENSITY_NPOINTS - Static variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
- DENSITY_PERIMETER - Static variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
- densityMethod - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
-
- Descriptives - Class in com.lobsterman.JavaGrinders
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- Descriptives() - Constructor for class com.lobsterman.JavaGrinders.Descriptives
-
empty private constructor ensures that the only objects of this type are the elements
enumerated above
- deselectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows to false
- deselectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows to false
- deselectRowsWithMissing() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deselects all rows if a value is missing in any of the included variables
- det() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
-
Determinant
- det() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Matrix determinant
- DeviceInterface - Class in com.lobsterman.JavaGrinders.control
-
the main class that represents an interface for external devices
- DeviceInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
-
standard constructor for the DeviceInterface class
- DeviceInterface(int, Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
-
standard constructor for the DeviceInterface class
- DeviceInterface(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
-
standard constructor for the DeviceInterface class
- DeviceInterface(int, float, Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
-
standard constructor for the DeviceInterface class
- DeviceOperator - Class in com.lobsterman.JavaGrinders.control
-
the main class controling something
- DeviceOperator(int) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceOperator
-
standard constructor for the DeviceOperator class
- deviceSocket - Variable in class com.lobsterman.JavaGrinders.control.NetworkInterface
-
- DeviceType_IN - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- DeviceType_INOUT - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- DeviceType_NONE - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- DeviceType_OUT - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- df - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- df - Variable in class com.lobsterman.JavaGrinders.parametric.ParametricTerm
-
- df0 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df1 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df2 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df3 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df4 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- df5 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
-
- dfE - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- dfM - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- dfMComplete - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- dfMP - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- dfT - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
-
- diagonal - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- diagonal - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
- dialog - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- disableAudioFeedback() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
- DiscriminantAnalysis - Class in com.lobsterman.JavaGrinders.parametric
-
- DiscriminantAnalysis(double[][], double[]) - Constructor for class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
-
Calculates a linear discriminant analysis (LDA) with all necessary
- displayFrameTime(String) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
- displayHistogram(byte[]) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- displayReference() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
display the reference frame in the tracking canvas
- displays - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- displayTransparentRect(Rectangle, float) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
- displayVideo - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- distance(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
the absolute value after subtracting the constant from each value of the variable
- DISTANCE_TO_ORDER - Variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Compares two points by distance to this point.
- distanceMax - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distanceMean - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distanceMin - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distanceMove - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distanceNet - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distanceSD - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distanceSquaredTo(GrahamPt2D) - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Returns the square of the Euclidean distance between this point and that point.
- distanceTo(GrahamPt2D) - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Returns the Euclidean distance between this point and that point.
- distanceTotal - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distanceVar - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- distThreshold - Variable in class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
-
- divide(double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Divide a matrix by a scalar, C = s*A
- divide(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
divides each value of the variable by the constant
- divideEquals(double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Divide a matrix by a scalar, C = s*A
- doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the descriptive statistics results for a variables
- doAnalyze_1Y(Variable, Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from a comparison with an a-priori mean
- doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
lists the results from a transition analysis of the variables.
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on one independent variable
(with 2 states).
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs a Contingency analysis (Y variable with 2 groups)
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
performs a parametric analysis with one Y and one X variable (with 2 groups)
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
lists the results from an analysis of one independent (with 2 states) and one dependent
variable.
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results from an analysis of one indepent (with 2 states) and one dependent
variable.
- doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
lists the results from an analysis of one dependent variable on one indepent variable
(with 2 states).
- doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on one continuous indepent
variable.
- doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
lists the results from an analysis of one independent (continuous) and one dependent
variable.
- doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results from an analysis of one independent (continuous) and one dependent
variable.
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on one independent variable
(with more than 2 states).
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs a Contingency analysis (Y variable with n groups)
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
performs a parametric analysis with one Y and one X variable (with multiple groups)
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
lists the results from an analysis of one independent (with multiple states) and one dependent
variable.
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results from an analysis of one independent (with multiple states) and one dependent
variable.
- doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
lists the results from an analysis of one dependent variable on one independent variable
(with more than 2 states).
- doAnalyze_1YnXcontinuous(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on multiple independent
variable.
- doAnalyze_1YnXcontinuous(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
lists the results from an analysis of one dependent variable on multiple indepent variable.
- doAnalyze_1YnXnGroups(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on multiple indepent
variable.
- doAnalyze_1YnXnGroups(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results from an analysis of one dependent variable on multiple indepent variable.
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
performs an analysis of multiple dependent variable.
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
controls an analysis of multiple dependent variables
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
performs an analysis of multiple dependent variable.
- doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
performs an analysis of multiple dependent variable.
- doAnalyze_nY1Xcontinuous(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent continuous variable on multiple indepent
variable.
- doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one ordinal or nominal dependent variable on multiple indepent
variable.
- doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
-
lists the results from an analysis of one dependent variable on multiple indepent
variable.
- doAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
lists the results from an analysis of one dependent variable on multiple indepent
variable.
- doAngle180DegRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Takes an angle in Degrees (°) and ranges it to between -180 and +180
- doAngle2PiRadRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Takes an angle in Radians and ranges it to between 0 and Pi°
- doAngle360DegRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Takes an angle in Degrees (°) and ranges it to between 0 and 360
- doAnglePiRadRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Takes an angle in Radians and ranges it to between -Pi and +Pi
- doANOVA(NumberVariable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results for an Analysis of Variance (ANOVA)
- doAutoSetup() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the task state of the RecordProc to perform a search for an object of interest
- doBeep(int) - Method in class com.lobsterman.JavaGrinders.control.AudioInterface
-
starts the device on one channel.
- doChiSquare() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
coordinates a Chi-square test on the observed values
- doClear() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a clear event
- doClose() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a close event
- doClose() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a close Document event
- doColorBars - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
- doCompare_1Y(double, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
lists the results from an analysis of one independent (with 2 states) and one dependent
variable.
- doCompare_1Y(double, NumberVariable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results from an analysis of one indepent (with 2 states) and one dependent
variable.
- doCopy() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a copy event
- doCorrelationAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over th intercept
- doCustomProcessing(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
replace this with whatever custom processing you like to do on the TargetCaptureDataList
- doCut() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a cut event
- doDescribeX() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
handles the describe all X variables event
- doDescribeY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
handles the describe all Y variables event
- doDiscriminant() - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
lists the results for a Discriminant Analysis
- doExperiment() - Method in class com.lobsterman.JavaGrinders.control.Experiment
-
runs the experiment
- doFactorialANOVA(NumberVariable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results for an Analysis of Variance (ANOVA)
- doFadeTrail() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
report the current time to wherever needed
- doFitXY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
-
handles the fit Y by X variables event
- doFractalAnalysis() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
lists the fractal dimension for the variable using the currently
selected set of rows
- doFTukey() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
coordinates a calculation of Freeman-Tukey deviates on the observed values
- doFTukeyOnPropFitting() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
coordinates a calculation of Freeman-Tukey deviates on the observed values after
proportional fitting of the observed values
- doFTukeyOnTotals() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
coordinates a calculation of Freeman-Tukey deviates on the observed values after upper and
lower matrix have been summed
- doGraphPeakIntervals(NumberVariable, NumberVariable, int, int, float, float, double, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
graphs the peak intervals
- doGraphPeakSizes(NumberVariable, NumberVariable, int, int, float, float, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
graphs the peak sizes
- doGraphValues(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
graphs the trace values
- doGraphValues(NumberVariable, NumberVariable, Grid) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
graphs the trace values
- doGraphValues(NumberVariable, NumberVariable, Grid, Grid) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
graphs the trace values
- doGValue() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
coordinates a G-test on the observed values
- doHierarchyAnalysis() - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
reports individual ordinal ranks and a hierachy analysis for a dominance matrix
- doHotellingF(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
controls the Analysis of mean angles
- doLabelXOrigin - Variable in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
- doLabelYOrigin - Variable in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
- doLinearity() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
-
calculate and report the estimates of linearity
- DominanceTable - Class in com.lobsterman.JavaGrinders
-
contains a table of dominance relationships and performs a variety of statistics
on it, including test of linearity, ordinal ranks, etc.
- DominanceTable(int) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
-
standard constructor for the DominanceTable class
- DominanceTable(int, double[][]) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
-
standard constructor for the DominanceTable class
- doMultLinRegression(NumberVariable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
lists the results for a Multiple Regression Analysis
- doNew() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a new Document event
- doOpen() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles an open Document event
- doOrientation() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
performs an analysis of principal axis orientations
- doOutlineBars - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
- doPaste() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a paste event
- doPCA(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
performs a principal components analysis for all dependent variables.
- doPCA(VariableOrganizer, boolean) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
performs a principal components analysis for all dependent variables.
- doPeakAnalysis(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
lists the results from an analysis of one independent (continuous) and one dependent
variable.
- doPeakAnalysis(NumberVariable, NumberVariable, int, int, float, float, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
lists the results from an analysis of one independent (continuous) and one dependent
variable.
- doPrepare() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the task state of the RecordProc to prepare for processing
- doPruneClosePeaks(ArrayList<Integer>, NumberVariable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- doRanks() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
-
calculate and report ranks
- doReference() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the task state of the RecordProc to reference acquisition
- doRegression(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results for a Regression Analysis
- doRegressionAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- doRegressionAnalysis(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- doSave() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a save event
- doSave() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a save Document event
- doSaveAs() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a save as event
- doSaveAs() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a save as ...
- doSelectAll() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles a select all event
- doShowSetup() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the task state of the RecordProc to perform a search for an object of interest
- dot(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Calculates the dot product of this vector and another
- doTauKr() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
coordinates a calculation of Kendall Tau value for a correlation between an
actor and a receiver matrix
- dotTest(double, NumberVariable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
lists the results for a t-test
- doUndo() - Method in class com.lobsterman.JavaGrinders.Presenter
-
handles an undo event
- doWarnings - Variable in class com.lobsterman.JavaGrinders.Grid
-
- doWatsonU2(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
controls the Analysis of mean angles
- doWatsonWilliamsF(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
controls the Analysis of mean angles
- doWheelerW(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
-
controls the Analysis of mean angles
- DoWilliamsCorr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculates the William's correction
- drawAnalysisRects() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
draws the outline of the areas of interest into the plotting canvas
- drawBGImage(Graphics2D, Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
adds a background image to the panel
- drawCell(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
draws the cell
- drawCell(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.Cell3D
-
draws the cell
- drawColor - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
- drawFrame - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
-
- drawFrame(Graphics2D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
draw a frame around the PreenterPanel's active drawing area
- drawFront - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- drawFrontToTracking(TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
draws the object onto the tracking canvas
- drawHotZoneRects() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
draws the outline of the areas of interest into the plotting canvas
- drawLabel(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
draws the label for the cell
- drawObject - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- drawObjectToTracking(TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
draws the object onto the tracking canvas
- drawPolys(SGPolygon[], Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
- drawShape(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
- drawShapeWithColor(Shape, Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
- drawSurround - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- drawSurroundToTracking(TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
draws the object onto the tracking canvas
- drawTShape(Graphics) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
-
draws the tRect if needed
- dX - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
- dY - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
- dZ - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
- g2 - Variable in class com.lobsterman.JavaGrinders.Tracker.RHComponent
-
- g2Comp - Variable in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
- gapBetweenPanels - Variable in class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
-
- generateCaptures(int) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
generates a set of Captures for all animals covered by the framework
- generateMoves(int, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
generates a set of Moves for all animals covered by the framework
- generateMoves(int, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
generates a set of Moves for all animals covered by the framework
- generateMovesFromZero(int, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
generates a set of Moves starting from zero for all animals covered by the framework
- get(int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get a single element.
- get12BitValue(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
- get16BitValue(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
- get32BitValue(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
- getAbasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of char stored at a given row of the Vector and converts it into
an integer starting with 0 at a char of 'A'
- getabasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of char stored at a given row of the Vector and converts it into
an integer starting with 0 at a char of 'a'
- getAD7147Cap1Read(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
-
Read the capacitance at sensor channel 1 from AD7147, The register map lists the address at
It accesses register 'Z', i.e.
- getAD7150Value(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
-
gets the sensor value.
- getAD7151_Cap(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
-
Read the serial number of the 7151 chip.
- getAD7151_SerNum(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
-
Read the serial number of the 7151 chip.
- getAdvancedServoHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
-
returns an advanced servo phidget - if it exists
- getAdvancedServoHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
returns an advanced servo phidget - if it exists
- getAnalogOutHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns a analog out hardware - if it exists
- getAnalogOutHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
returns a AnalogOut phidget - if it exists
- getAnalogSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the interface's hardware device that does sensor access
- getAngleFrequencies() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
creates and returns a variable containing the series of time distances between captures
- getAngles() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
returns an array of distances for the moves
- getAnglesFromLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the distances from one specific location
- getAnglesToLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the direction to one specific location
- getANOVAResults(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the ANOVA statistics for the variable
- getANOVAResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the ANOVA statistics for a full factorial model
- getAOI() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
returns the analysis area for the tracking job
- getApertureTime(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- getAppletInfo() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
provided for future browsers to obtain development info
- getAppletInfo() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
-
provided for future browsers to obtain development info
- getArea() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the area of the polygon in screen pixels
- getAreaDensRatio(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the object's point density in the forward half of the object
- getArray() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Access the internal two-dimensional array.
- getArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns an array of double values of the Vector
- getArrayCopy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Copy the internal two-dimensional array.
- getAutoCorrelationResults() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
obtains the Autocorrelation statistics for the variable
- getAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
-
automatically finds and sets the number of units in the space
- getAutoObjects(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
returns a guess for the objects to track
- getAveragedSensorValue() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
-
standard constructor for the DeviceController class
- getAxisFormula(float[]) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the formula for the eigenvector
- getBarWidth() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- getBBSRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a cardinal rank (BBS method) for each individual
- getBGRColorbytes(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
returns the value of the color pixels as bytes for BGR
- getBinLoc(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns whether the GridSpace3D contains a SpatialVector
- getBinMeans(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a frequency distribution for a given set of bins
- getBinnedCoordsXY(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
bins the captures into a FrequencyTable
- getBinnedCoordsXY(int, int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
bins the captures into a FrequencyTable
- getBinomial(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the binomial probability for k outcomes out of N trials
where the probability of getting that outcome is p
- getBinomialApproxProbability(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the one-tailed pobability for a binomial of k outcomes out of N trials
where the probability of getting that outcome is p
- getBinomialProbability(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the one-tailed pobability for a binomial of k outcomes out of N trials
where the probability of getting that outcome is p
- getBinomialProbability2Tail(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the one-tailed pobability for a binomial of k outcomes out of N trials
where the probability of getting that outcome is p
- getBitFromByte(byte, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the value of the bit at a particular position within the byte
- getBlinkMVersion(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
-
Read the version on a specific BlinkM.
- getBlue(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
returns the value of the blue pixel value as a byte
- getbooleanValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a boolean
- getBotLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the bottom of the frame
- getBoundPoly() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the factor matrix of the object outline for orientation
- getBoydSilkRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a cardinal ranks for stochastic transitivity
Boyd and Silk (1983) for each individual
- getBufferedImageFromPanel() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
returns a BufferedImage of the panel's graphics port
- getBusID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getByClosest(List<TargetCaptureData>, TargetCaptureData, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
matches up individual TargetCaptureData ArrayLists based on past locations
- getByteLength() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
gets the byte length
- getCameraID() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
returns the camera ID
- getCapture(int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the capture stored at a given row of the Vector
- getCaptureAtDistanceOnPath(int, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
obtains a coordinate along the path at a given travel distance
- getCaptureAtTime(int, long) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
obtains a coordinate along the path at a given time
- getCaptureAtTimeOnPath(long) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
obtains a coordinate along the path at a given time
- getCaptureAtTimeOnPath(Date) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
obtains a coordinate along the path at a given time
- getCaptureAtTimeOnPath(int, long) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
obtains a coordinate along the path at a given time
- getCaptureVariable(int) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns a specific Animal from the Population
- getCell(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the double from one element of this matrix
- getCellValue(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
-
returns the double from one element of this matrix
- getCellValue(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the double from one element of this matrix
- getCentered() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its
mean
- getCenteredRectangle(Point, double, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
- getCenterLocation() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the average neighbor distance
- getCenterLocations() - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns a CaptureVariable with the arithmnetic centers for all members at any given time
- getCenterPixel() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the pixel info for the center point
- getCenterPixel() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the center of the target
- getCenterVector() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the center vector of the object
- getCentroid() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the centroid of the object
- getChannelAccess() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns whether the interface is polling or event-driven
- getChannelID() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
returns its channel
- getcharValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of char stored at a given row in the Vector
- getChiSquaredCriticalValue(double, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Returns chi-squared probability for given value and degrees
of freedom.
- getChiSquaredProbability(double, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Returns chi-squared probability for given value and degrees
of freedom.
- getCircleLineIntersections(MoveVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the intersection points between a circle and a line segment
- getCircleLineIntersections(SpatialVector, SpatialVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the intersection points between a circle and a line
- getCircleLinesegmentIntersections(MoveVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the intersection points between a circle and a line segment
- getCircleLinesegmentIntersections(SpatialVector, SpatialVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the intersection points between a circle and a line segment
- getCircularDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns descriptive Circular Statistic for the variable using the currently
selected set of rows
- getCircularDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns descriptive Circular Statistic for the variable using the currently
selected set of rows
- getCircularDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
lists the descriptive statistics for the angles of the moves using the currently
selected set of rows
- getCircularDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
lists the speed statistics for the variable using the currently
selected set of rows
- getClosest(List<TargetCaptureData>, TargetCaptureData) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
matches up individual TargetCaptureData ArrayLists based on past locations
- getColLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular column label for the ContingencyTable
- getColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns column labels for the ContingencyTable
- getColMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
-
returns the sums for each column as a 1D double array
- getColorDifference(Color, Color) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
get the average difference between two colors
- getColorDifference(int[], byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
get the average difference between two colors
- getColorDifference(byte[], byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
get the average difference between two colors
- getColorDifference(float[], float[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
get the average difference between two colors
- getColSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the sum for a particular row of the table
- getColSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the row sums of the table
- getColSums() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
returns the sums for each row as a 1 dimensional Matrix
- getColumnArrayCopy(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Make a one-dimensional column copy of the internal array.
- getColumnPackedCopy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Make a one-dimensional column packed copy of the internal array.
- getColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getCombinations(int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the possible combinations
- getCombinedIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a TreeMap containing all different values found in either this variable
using the currently selected set of rows or in the selected rows of a second variable
- getCombinedPaintedPathAreaSize() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
makes the polygon that is covered by all the moves at a given width.
- getCombinedPathArea() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
makes the polygon that is covered by all the moves at a given width.
- getCompareHighValue() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
gets the high value for a comparison
- getCompareLowValue() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
gets the low value for a comparison
- getConfidenceInterval(double) - Method in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
reports the confidence interval
- getConnect() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns whether the Capture should be visually connected
- getConnect() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
sets whether the move should be visually connected
- getConsolidatedTimeLine(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
It coordinates times for all captures to conform to the same underlying timeline
- getConstraint() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the spatial constraint for the population
- getConstraint() - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns the spatial constraint for the group
- getConstraint() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
returns the arena linked to the framework
- getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
performs a Test of Independence on the
ContingencyTable/
and reports the results as statistics for X2 and loglikelihood ratio.
- getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the results for a test of independence with expected frequencies calculated from observed
- getContingencyTableResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the results for a test of independence with the provided expected values
- getControlDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the device controller for a particular position in the ArrayList - if available
- getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
returns a control arduino - if it exists
- getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the interface's hardware device that switches relays
- getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
-
returns an output phidget - if it exists
- getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
returns an output phidget - if it exists
- getControlInterface() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
returns the control interface
- getCoordMapRect() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
gets the Presenter that owns the Panel
- getCorrelationResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getCorrMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
calculates a correlation matrix for continuous, dependent variables.
- getCrossTabulation(Variable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a crosstabulation of values for two variables in form of a matrix
- getCrossTabulation(Variable, TreeMap<Object, Integer>, TreeMap<Object, Integer>, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a crosstabulation of values for two variables in form of a matrix
- getCurrent() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- getCurrentLocation() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the current location for the animal
- getCustomColorRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the custom color for a given row
- getD() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
-
Return the block diagonal eigenvalue matrix
- getDarkestPixel() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
- getDataChannelDescriptor() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
-
lists the info
- getDataFileName() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
gets the data file name
- getDataNotes() - Method in class com.lobsterman.JavaGrinders.BasicData
-
- getDataRate() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
get the data rate
- getDataTimeStamp() - Method in class com.lobsterman.JavaGrinders.BasicData
-
- getDataValue() - Method in class com.lobsterman.JavaGrinders.BasicData
-
- getDateValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
-
returns the time stored at a given row of the Vector as a Date
- getDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns the descriptives for the variable
- getDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns the descriptives for the variable
- getDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the descriptives for the variable
- getDeviceController() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
gets the device controller
- getDeviceName() - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
returns the name of the device
- getDeviceName() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getDeviceNumber() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the device operator for a particular position in the ArrayList - if available
- getDeviceOperatorForChannel(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the device operator for a particular position in the ArrayList - if available
- getDeviceSensor() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
gets the device sensor
- getDeviceSerialNumber() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getDeviceType() - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
returns the type of the device
- getDeviceType() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the mode for the DeviceInterface
- getDeviceTypeStr() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
-
gets the string for the device type
- getDeviceVendor() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getDeviceVersion() - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
returns the version of the device
- getdf() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the degrees of freedom for the ContingencyTable
- getDifferenceTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getDirection() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the direction of the Axis
- getDirectionalErrorToGoal(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
lists the speed statistics for the variable using the currently
selected set of rows
- getDirectionRad(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the direction of the object in radians
- getDiscriminantFunctionValues(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
-
Calculates the discriminant function values for the different groups
- getDisplayPanel() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
The routine creates the Applets display panel out of a set of hierarchical containers.
- getDistance(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
find the angle that is halfway between the two angles in a clockwise direction
- getDistanceMatrix(int) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
calculates a matrix of distances between all valid (i.e., selected and non-missing) locations
- getDistanceNet() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the net distance between start and end Capture
- getDistances() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
returns an array of distances for the moves
- getDistancesToLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
returns the distances to one specific location
- getDistanceToLinesegment(MoveVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
- getDistanceToLinesegment(SpatialVector, SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
- getDistanceTotal() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the distance totals for the Captures if connected
- getDominanceActivityIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a dominance activity index for each individual
- getDominanceIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
calculates a dominance index for each individual
- getDominanceMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getdoubleArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns an array of double values of the Vector
- getDoublePivot() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
-
Return pivot permutation vector as a one-dimensional double array
- getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the value stored at a given row of the Vector as a double
- getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a double
- getdoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a double
- getDuration() - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
-
returns the duration of the interaction
- getDuration() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the time the move took
- getDurations() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
returns an array of speeds for the moves
- getEarliestTimeRef() - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns the earliest time reference for the group
- getEndCapture() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the end capture for the animal
- getEndCapture() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the end capture of the move
- getEndTime() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the start time for the animal
- getEndTime() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the end capture of the move
- getEndTime() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
-
returns the end time in milliseconds
- getEndTimes() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
creates and returns a variable containing the end times for these moves
- getEndX() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the end capture of the move
- getEndY() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the end capture of the move
- getEuclidianDistance(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the straight-line distance between two points
- getExpectedMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpectedMatrix(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpMatrixFromProbabilities() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence
- getExpMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for a test of independence if the diagonal
is structurally zero
- getExponent(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the exponent in scientific notation
- getExternalData() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
gets the Object to print after the data
- getFCriticalValue(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Critical value for given probability of F-distribution.
- getFile(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
user selects a file to load
- getFileChooser() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
user selects a file to open
- getFileDialog(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
user selects a file to load
- getFillColor() - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
returns the fill color of the bars
- getFirstDerivative(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its mean
- getFirstLabelColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the first label variable in the VariableOrganizer
- getFirstXColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the first dependent (X) variable in the VariableOrganizer
- getFirstYColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the first dependent (Y) variable in the VariableOrganizer
- getFisherWeights() - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
-
Returns the weight for the linear fisher's discrimination functions
- getfloatValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as a float
- getFocusDistance(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- getFoundObjectBytes(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
utility function to get the 9 pixel bytes around x.y
- getFProbability(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Computes probability of F-ratio.
- getFractalDimension() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the fractal dimension of the coordinates
- getFractalDimension(double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the fractal dimension of the coordinates
- getFrameRate() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
returns the preferred frame rate
- getFrameRate() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
returns the current frame rate
- getFrequencies(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a frequency distribution for a given set of bins
- getFrequencies() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the frequencies for different instances of the variable using the currently
selected set of rows up to the specified number of maxInstances
- getFrontArea(double, float, TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
returns the area in front of the animal
- getFTDI2xxHardware() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
-
returns a FTDI interface - if it exists
- getFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns Freeman-Tukey deviates for a cell wise examination of the table
- getGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
coordinates a replicated goodness of fit test
- getGraphPeakIntervals(NumberVariable, NumberVariable, int, int, float, float, double, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
graphs the peak intervals
- getGray(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
returns the value of a gray scale pixel value as an int
- getGrayBit(int, int, BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
gets a gray value from a pixel of a BufferedImage
- getGrayByteArray(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
gets a gray value from a pixel of a BufferedImage
- getGrayPixelMax(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
reports the max gray scale value for the current area of interest
- getGrayPixelMax(TrackingJobSetting) - Method in interface com.lobsterman.JavaGrinders.Tracker.ObjectTracer
-
- getGrayValue(int, int, BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
gets a gray value from a pixel of a BufferedImage
- getGreen(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
returns the value of the green pixel value as a byte
- getGrid() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the grid in the dimension
- getGridInterval() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the grid interval for the axis
- getGridSpace3D() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the GridSpace used in mapping the points
- getGridSpaceFromVars() - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
creates a new Constraint that includes all selected coordinates of all selected animals
- getGroup() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
returns the group of animals linked to the framework
- getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the descriptives for the groups identified by X
- getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
lists the descriptives for the groups identified by X
- getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the descriptives for the groups identified by X
- getGroupMeans(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
returns an array of means of Ys for multiple states defined in X
- getGroupMVDescriptives(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
returns an array of multivariate Y descriptives for multiple states defined in X
- getGroupNs(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns an array of sample sizes of Ys for multiple states defined in X
- getGroupVarCovars(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
returns an array of varCovar matrices of Ys for multiple states defined in X
- getH() - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
-
Return the Householder vectors
- getHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the interface's hardware
- getHaversineDistance(SpatialVector, SpatialVector) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Returns the straight-line distance (in meters) between two locations defined as longitude/latitude (in degrees)
- getHaversineDistance(SpatialVector, SpatialVector, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Returns the Vector in meter distance and bearing degrees (counterclockwise from East)
between two locations defined as longitude/latitude (in degrees).
- getHeading() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the end capture of the move
- getHigh() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the high value
- getHighliteColor() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the highlite color for the animal
- getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row is currently highlited.
- getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given row is currently highlited
- getHighX() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the low x value for the Gridpsace3D
- getHighY() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the low x value for the Gridpsace3D
- getHighZ() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the low x value for the Gridpsace3D
- getHLabelPos(double, String) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
returns the horizontal position for the String
- getHodgesN() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
fills the descriptive circular statistics for the angle variable
- getHodgesP(double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns the angle where the maximum number of angles are clustered within a range of 180 degrees
- getHotellingF(SquaresCrossproductResults) - Method in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
returns Hotelling's Statistic for differences in mean angle
- getHotellingFResults(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
lists the results from an analysis of differences in mean angles for a variable of locations
- getHotShapeList() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the hot spaces that trigger the interface
- getHotShapes() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
returns the hot regions
- getHSBColorVals(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
returns the HSB color values for an RGB Color
- getHSBColorVals(Color) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
-
returns the HSB color values for an RGB Color
- getHTilePosition() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
gets the horizontal tile position for the tracking job
- getHypothesisPs() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
returns the expected probabilities for different columns
- getI2CHardware() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
gets the hardware for i2c
- getI2CHardware_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
gets the FTDI hardware for i2c
- getI2CHardware_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
gets the LinkM hardware for i2c
- getIDMap() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a TreeMap containing all different values found in the variable using
the currently selected set of rows
- getIDs() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a TreeMap containing all different values found in the variable using
the currently selected set of rows
- getIDString(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a single entry for a key in the TreeMap as a String
- getIDStrings() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the keys in the TreeMap as strings
- getIFKitHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
returns a interface kit phidget - if it exists
- getImage() - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
-
returns the image to display in the panel
- getImage() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
returns the Image for the Component
- getImagEigenvalues() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
-
Return the imaginary parts of the eigenvalues
- getInt(byte[]) - Static method in class com.lobsterman.JavaGrinders.control.LinkM_RH
-
returns the integer for the byte array
- getIntAngleDeg(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Returns an angle in Degrees (°) as an integer between -180 and 180
- getInteractions(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns a crosstabulation of values for two variables in form of an interaction matrix
- getInterfaceType_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getInterpolatedCaptureAtDistance(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
interpolates and returns the capture within this move at a given distance from the start
- getInterpolatedCaptureAtTime(long) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the interpolated capture of the move
- getInterpolatedTimeAtCapture(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the interpolated capture of the move
- getIntersectionsWithCircle(SpatialVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the point of intersection of this move with a circle of a given radius
- getintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the value stored at a given row of the Vector as an int
- getItemValues(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists the Variables registered with the VariableOrganizer
- getItsName() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the name for the interface
- getItsRect() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
-
updates the analysis areas for the tile group
- getItsRenderer() - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
set the frame renderer
- getJaccard(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the Manhattan proximity measure to another variable
- getK(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns K for the Watson-Williams Test
- getL() - Method in class com.lobsterman.JavaGrinders.Jama.CholeskyDecomposition
-
Return triangular factor.
- getL() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
-
Return lower triangular factor
- getLabelBars() - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
- getLabelEveryN() - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
- getLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
return the currently selected set of labels
- getLabelXGrid() - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
- getLabelYGrid() - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
- getLatestTimeRef() - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns the latest time reference for the group
- getLeftLabelPos(String) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the top of the frame
- getLength() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
retrieves the length of the vector
- getLength() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Reports the magnitude of this vector
- getLengthSquared() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Reports the magnitude of this vector squared
- getLibraryVersion() - Static method in class com.lobsterman.JavaGrinders.control.Arduino
-
closes the device
- getLinearityResults() - Method in class com.lobsterman.JavaGrinders.DominanceTable
-
returns results from a Test of Linearity.
- getLineColor() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the line color for the variable
- getLinkMHardware() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
-
returns a interface kit phidget - if it exists
- getLocationColor() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the location color for the variable
- getlongValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the instance of long stored at a given row in the Vector
- getLow() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the low value
- getLowerWayParametricTermsSum(int) - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- getLowX() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the low x value for the Gridpsace3D
- getLowY() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the low x value for the Gridpsace3D
- getLowZ() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the low x value for the Gridpsace3D
- getMahalanobisDist(Matrix, Matrix, Matrix) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the Mahalanobis Distance
- getMahalanobisDistance(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
-
Calculates the discriminant function values for the different groups based on Mahalanobis distance
- getMahalanobisDistSquared(Matrix, Matrix, Matrix) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the squared Mahalanobis Distance
- getMahalanobisDistVar(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
-
returns a column of Mahalanobis distances for individual items defined by multiple Y columns
- getMajorAngleDeg() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the length of the Polygon
- getMajorAngleRad() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the length of the Polygon
- getMajorAxis() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
finds the major axis through the object
- getMajorFactorPattern() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the angle for the eigenvector
- getManhattan(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the Manhattan proximity measure to another variable
- getManhattanDistance(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the straight-line distance between two points
- getManhattanLength() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Reports the magnitude of this vector
- getMannWhitneyUProbability(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the probability for a given Mann Whitney U statistic
- getMantelP(ContingencyTable, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
performs Mantel's test with number of permutations limited by MaxPermutations
- getMantelZ(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
calculate Mantel's Z statistic for a matrix and a second matrix passed in
- getManWhitneyUResults(Variable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the results from an analysis of differences in mean angle distance from a hypothetical direction
- getMatrix(int, int, int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get a submatrix.
- getMatrix(int[], int[]) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get a submatrix.
- getMatrix(int, int, int[]) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get a submatrix.
- getMatrix(int[], int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get a submatrix.
- getMatrixSize() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getMaxDiff() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
- getMaxValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the maximum value stored in the Vector
- getMaxValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getMaxVoltage(int) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
returns the output voltage on a channel.
- getMean(double[]) - Static method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
-
Returns the mean of the given values.
- getMeanBackgroundColor(TrackingJobSetting, List<SGPolygon>, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
utility function to get the average background color for the trackjob
- getMeanDistanceToLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
returns the average neighbor distance
- getMeanValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector
- getMedian() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
fills the descriptive circular statistics for the angle variable
- getMember(int) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns a specific Animal from the entire group
- getMemoryRegister() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
returns a specific memory register
- getMetricDistsFromLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
if the Captures are defined in longitude and latitude then this function converts these to distanced measures in meters using Haversines
- getMetricDistsFromLatLong(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
if the Captures are defined in longitude and latitude then this function converts these to distanced measures in meters using Haversines
- getMilliSecondsToWait() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- getMilliSecondsValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
-
returns the time stored at a given row of the Vector in milliseconds
- getMilliSecsBetween(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the difference in timestamps for this and another vector in milliseconds, the other vector
can be either earlier or later.
- getMinConvexPolygon() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
returns the minimum convex polygon that includes the captures
- getMinNeighborDistance() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the minimum neighbor distance
- getMinorAngleDeg() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the length of the Polygon
- getMinorAngleRad() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the length of the Polygon
- getMinorAxis() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
finds the minor axis through the object
- getMinorFactorPattern() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the angle for the eigenvector
- getMinValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the minimum value stored in the Vector
- getMinValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of dominance relationships between actor and receiver
- getMissingRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row is currently missing.
- getMotorCount() - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
returns the number of servo motors controlled by the Arduino
- getMoveAngles(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the series of distances between captures
- getMoveArea() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the area of the move at a given width
- getMoveDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
fills the descriptive statistics for the moves within the variable and returns the results
- getMoveDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
fills the descriptive statistics for the moves within the variable and returns the results
- getMoveDescriptives(boolean, double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
fills the descriptive statistics for the moves within the variable and returns the results
- getMoveDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
fills and returns the Descriptives with the default cutoff for movement
- getMoveDescriptives(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
fills and returns the Descriptives
- getMoveDirection() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- getMoveDirectionString() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- getMoveDistances() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the series of distances between captures
- getMovementCutoff() - Method in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
returns the cutoff value below which moves are considered stationary
- getMovePoly() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the area of the move at a given width
- getMoves() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the series of absolute moves between captures
- getMoves(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the series of moves between captures
- getMoveSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the series of distances between captures
- getMoveVector(int) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
returns the Move stored at a given row of the Vector
- getMovingAverageSmoothing(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to its mean
- getMultLinRegressionResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getName() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getName() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the name of the Variable
- getNCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the total number of cells for the ContingencyTable
- getNCellsAboveEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells above or equal to a given value
- getNCellsAboveValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells above a given value
- getNCellsBelowEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells below or equal to a given value
- getNCellsBelowValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of cells below a given value
- getNCols() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of columns of the Table
- getNColumns() - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
provides read access to private variable nCols
- getNColumns() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get column dimension.
- getNControlDeviceOperators() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the number of serial device controllers registered with the interface
- getNDataRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
returns the number of valid data rows that were read from the text file
- getNDeviceOperators() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the number of serial device controllers registered with the interface
- getNDiagonals() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the total number of diagonal cells for the ContingencyTable
- getNextSelectLabelIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the next label column after a given column
- getNextSelectXColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the next selected column after a given column
- getNextSelectYColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the next selected column after a given column
- getNI2CDevices() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
gets the number of i2c devices
- getNIDs() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of different values present in the currently selected set of rows
- getNInteractionTerms(int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the number of interaction terms that are part of the factorial model
- getNInterfaceChannels() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the number of channels for the interface
- getNLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many labels are under the control of this VariableOrganizer
- getNMembers() - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns the number of members in the group
- getNMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of missing rows in the currently selected set
- getNormalCriticalValue(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Returns the critical value for a given probability
- getNormalProbability(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Returns the probability that the standardized normal variate Z (mean = 0, standard
deviation = 1) is greater than z.
- getNotes() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the Notes of the Variable
- getNoZeroCellMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the values from the matrix with a constant of 0.25 added to each cell
- getNPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the size of the coordinate array of the polygon
- getNRows() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of rows of the Table
- getNRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
provides read access to private variable nRows
- getNRows() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get row dimension.
- getNRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of rows in the Variable
- getNRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the number of rows for the VariableOrganizer
- getNSelectRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of currently selected rows for the variable
- getNSelectRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the number of selected rows
- getNSensorDeviceOperators() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the number of serial device controllers registered with the interface
- getNSubAreas() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
lists the segments of the polygon
- getNTraces() - Method in class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
-
returns the number of traces in the Panel
- getNTrackingJobSettings() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
returns the length of the array of tracking jobs
- getNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the descriptive statistics for the variable and returns the results
- getNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the number of units in the space
- getNUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of currently selected rows for the variable which do
not have missing values
- getNUVCDevices() - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- getNValidRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the number of valid rows in the currently selected set
- getNValidTargets(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
examines for valid TargetCaptureData in the TargetCaptureData list
- getNValidTargets(TargetCaptureData[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
examines for valid TargetCaptureData in the TargetCaptureData array
- getNVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many variables are under the control of this VariableOrganizer
- getnWay(int) - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- getNXVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the number of independent variables in the Organizer
- getNXVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many X variables are under the control of this VariableOrganizer
- getNYVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the number of dependent variables in the Organizer
- getNYVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
how many Y variables are under the control of this VariableOrganizer
- getObjectLength() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the object's length
- getObjectWidth() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the object's width
- getObjLength() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
returns the length of the TargetCaptureData record
- getObjSizeVar() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
gets the acceptable amount of variation in object size
- getObjWidth() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
returns the width of the TargetCaptureData record
- getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.DominanceTable
-
returns ordinal ranks for each individual
- getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
-
returns individual ordinal ranks from matrix of interactions between entities
- getOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the VariableOrganizer instance
- getOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the VariableOrganizer for the Variable
- getOrientedAngles() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the long and wide angles for the target in radians
- getOrientedBoundBox() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the factor matrix of the object outline for orientation
- getOrientedDimensions() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the factor structure of the object outline for orientation
- getOrientedPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the factor matrix of the object outline for orientation
- getOrigin() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the origin of the dimension
- getOS() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
-
- getParameterInfo() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
provided for future browsers to list the type of parameters the
applet needs to function properly and which options are available
- getParser() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
gets the parser
- getPathCoordinate(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
gets the point for a row from the SGPolygon
- getPathOutline() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the area of the move at a given width
- getPeakArea() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- getPeakData(ArrayList<Integer>, NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- getPeakHeight() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- getPeakIntervals(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- getPeakLocations(NumberVariable, int, float, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
from Tom O'Haver's toh@umd.edu great tutorial at
- getPeaks(NumberVariable, NumberVariable, int, int, float, float, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
-
lists the results from an analysis of one independent (continuous) and one dependent
variable.
- getPeaksPalshikar(int, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
A standard peak detector in time series by Jean-Yves Tinevez jeanyves.tinevez@gmail.com May 10, 2011
The goal of this class is to identify peaks in a 1D time series (float[]).
- getPeakTime() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- getPeakTriggeredTraces(NumberVariable, ArrayList<Integer>, long) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
from Tom O'Haver's toh@umd.edu great tutorial at
- getPeakValues(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
removes the smaller peak if two are too close
- getPeakWidth() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- getPerimeter() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the perimeter of the polygon in screen pixels
- getPerimeterDensRatio(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the object's perimeter in the forward half of the object
- getPermutedTable(int[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
gets a variant of the interactionTable with rows and columns switched with
a given permutation
- getPivot() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
-
Return pivot permutation vector
- getPixelSpaceX() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the number of x pixels in screen space
- getPixelSpaceY() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the number of y pixels in screen space
- getPixelSpaceZ() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the number of z pixels in screen space
- getPlotTargetStyle() - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
-
- getPointDensRatio(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the factor matrix of the object outline for orientation
- getPointInRectangle(double, double, Rectangle2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
-
Returns a point based on (x, y) but constrained to be within the bounds
of a given rectangle.
- getPolarVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the angle in degrees to another point.
- getPort_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getPortID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getPortParent_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getPreviousInterval() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- getProbabilityEstimates(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
-
Calculates the probability for the membership in the different groups
- getProductID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getProductName_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getProductName_uvc() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getProductTypeID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getProductTypeString_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getPropMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for proportional fitting with diagonal
present
- getPropMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix of expected values for proportional fitting with diagonal
absent (see Bishop et al., 1975; following Freeman, 1992)
- getProximity(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the proximity measure to another variable
- getProximity(Variable, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the proximity measure to another variable
- getQ() - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
-
Generate and return the (economy-sized) orthogonal factor
- getR() - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
-
Return the upper triangular factor
- getRampBlackColorTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- getRampColorBlackTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- getRampColorDownTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- getRampColorUpTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- getRampColorWhiteTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- getRampWhiteColorTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- getRandomValue() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a randomly selected row of the Vector
- getRange() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the minimum value stored in the Vector
- getRanks() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
return the ranks for the values in this array of the
currently selected subset
- getRaoSpacing() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns Rao's Spacing Statistic for the variable using the currently
selected set of rows.
- getRaoSpacingCriticalValue(double, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the critical value of the Rao spacing statistic
- getRaoSpacingProbability(double, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the probability for Rao's Spacing Statistic for the variable using the currently
selected set of rows.
- getRayleighR() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns Rayleigh's R Statistic for the variable using the currently
selected set of rows
- getRayleighZ() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns Rayleigh's Z Statistic for the variable using the currently
selected set of rows
- getRealEigenvalues() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
-
Return the real parts of the eigenvalues
- getRectangle(Point, Point) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
- getRed(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
-
returns the value of the red pixel value as a byte
- getReferenceImageEdits() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
gets the reference edits for the RecordProc
- getRegisters(byte, int) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
-
cycle and report from all the registers
- getRegressionResiduals(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResiduals(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResiduals(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over th intercept
- getRegressionResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResults(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRegressionResults(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the regression statistics for the variable with control over the intercept
- getRelayHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
returns a relay arduino - if it exists
- getRelMoveVector() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the difference vector of the move relative to the
previous heading direction
- getRelMoveVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the difference vector of the move relative to the
previous heading direction
- getReplicatedGoodnessOfFitResults(Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
-
- getReportType() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
- getResampledVariable(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
return the variable after resampling
- getRGBforWaveLength_Human(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ColorUtilities
-
Creates a Color object given the wavelength instead of the
usual RGB or HSB values.
- getRGBforWaveLength_Screen(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ColorUtilities
-
Creates a Color object given the wavelength instead of the
usual RGB or HSB values.
- getRightLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the bottom of the frame
- getRoundness() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the roundness factor of the polygon as object perimeter squared divided by object area.
- getRowArrayCopy(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Make a one-dimensional row copy of the internal array.
- getRowLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular row label for the ContingencyTable
- getRowLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns row labels for the ContingencyTable
- getRowMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
-
returns the means for each row as a 1D double array
- getRowNumbers() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the number of currently selected rows for the variable
- getRowOrder() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the row order for the Variable
- getRowOrderRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the row order
- getRowPackedCopy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Make a one-dimensional row packed copy of the internal array.
- getRowSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the sum for a particular row of the table
- getRowSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the row sums of the table
- getRowSums() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
returns the sums for each row as a 1 dimensional Matrix
- getS() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
-
Return the diagonal matrix of singular values
- getSameXYScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
x and y Axis measures are at the same scale
- getSameXYZScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
x, y and z Axis measures are at the same scale
- getScaledPoint(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Scales a single location to a frame's x and y scale values
- getSDValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector as a
double
- getSecondsValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
-
returns the time stored at a given row of the Vector in seconds
- getSecondsVariable() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
-
returns the variable with time in seconds
- getSecsBetween(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the difference in timestamps for this and another capture in seconds, the other capture
can be either earlier or later.
- getSelectCell(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given cell of the datamatrix is currently selected
- getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row is currently selected.
- getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given row is currently selected
- getSensorDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the device sensor for a particular position in the ArrayList - if available
- getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
returns a sensor arduino - if it exists
- getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the interface's hardware device that switches relays
- getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
-
returns a sensor phidget - if it exists
- getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
returns a sensor phidget - if it exists
- getSensorRawValue(int) - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
returns the sensor value for the device on one channel.
- getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
gets the sensor's value from a channel
- getSensorValue(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
starts the device on one channel.
- getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
starts the device on one channel.
- getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
-
gets the sensor value.
- getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
-
gets the sensor's value from a channel
- getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
-
returns the sensor value for the device on one channel.
- getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
gets the sensor's value from a channel
- getSensorValue() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
-
gets the sensor value
- getSensorValue() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
-
gets the sensor value
- getSerialNumber() - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
returns the serial number of the device
- getSerialNumberString_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getServoHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
returns a servo arduino - if it exists
- getServoHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
returns a servo phidget - if it exists
- getShapeRatio(SingularValueDecomposition) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the ratio of major vs minor axis
- getSign(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Examines a double and returns its sign as an integer
- getSignalGenerator() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
returns the operator's signal generator
- getSignedRank(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the signed ranks of distances to the specified value
- getSignedRankW(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
fills the one-tailed sum of signed ranks
- getSignedRankWProbability(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the one-tailed robability of obtaining this Signed Rank W or greater
- getSingularValues() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
-
Return the one-dimensional array of singular values
- getSlope() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
returns the slope for the Regression formula
- getSpace() - Method in class com.lobsterman.JavaGrinders.Grid
-
returns the grid space
- getSpaceWidth() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- getSpatialDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
-
fills the descriptive statistics for the variable and returns the results
- getSpatialDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
fills the descriptive statistics for the variable and returns the results
- getSpatialMapLook() - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
returns the look of the Map
- getSpatialVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the angle in degrees to another point.
- getSpatialVector(int) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
returns the SpatialVector stored at a given row of the Vector
- getSpeed(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the speed of travel between this and another capture as distance/second
- getSpeed() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the speed for the move
- getSpeed() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- getSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
returns an array of speeds for the moves
- getSquaredDisplacementFunction() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
obtains the mean squared displacement
- getSquaredDisplacements() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
obtains the mean squared displacement
- getSquaredEuclidianDistance(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the straight-line distance between two points
- getSquEuclidian(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the Euclidian proximity measure to another variable
- getSSCPMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
calculates a variance/covariance matrix for continuous, dependent variables.
- getSSCPMatrixJ(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
calculates a correlation matrix for continuous, dependent variables.
- getStartCapture() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the start capture for the animal
- getStartCapture() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the start capture of the move
- getStartTime() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the start time for the animal
- getStartTime() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the start capture of the move
- getStartTime() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
-
returns the start time in milliseconds
- getStartTimes() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
creates and returns a variable containing the start times for these moves
- getStartX() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the start capture of the move
- getStartY() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the start capture of the move
- getStatus() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- getStatusLED() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
gets the status LED of the tracker
- getStraightnessIndex(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
obtains the straightness across two line segments which meet with a specific angle
- getString() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
returns the cell value as a formatted String or the label string
- getString(Pointer<Byte>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- getStringArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a given row of the Vector as a String
- getStringValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the capture stored at a given row of the Vector as a String
- getStringValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
returns the value from a given row in the array as a String object
- getStringValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a given row of the Vector as a String
- getSubImage(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
returns the buffered image for the export region
- getSubRect() - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
returns the export region
- getSumValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector
- getSurround(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
returns the area around the animal
- getSurroundEllipse(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
returns the area around the animal
- getTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
returns the crosstabulation (i.e., frequency) table
- getTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the dimensions of the Table
- getTargetArea() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the length of the Polygon
- getTargetData(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the ratio of major vs minor axis
- getTargetDataForTrackJob(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
report the info on the matching target
- getTargetDescriptor() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
returns whether the TargetCaptureData record was found on its main pass through the image
- getTargetDescriptor() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
gets the targetDescriptor for the tracking job
- getTaskState() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
gets the task state of the RecordProc
- getTauKr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
organize a TauKr test for a correlation between actor and receiver matrix
- getTauKrP(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
performs the Kr test with number of permutations limited by MaxPermutations
- getTCriticalValue(double, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Critical value for given probability of F-distribution.
- getTimeBetweenFrames() - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
-
returns the time between frames
- getTimeDifferenceMatrix() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
calculates a matrix of distances between all valid (i.e., selected and non-missing) locations
- getTimeMilliSecs() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the timestamp for this capture
- getTimeRef() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the timestamp for this capture
- getTimeRefs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the times for these captures
- getTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- getTimes() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the times for these captures
- getTimes(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
return the Vector for the times of a given track job
- getTimesBetweenCaptures() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
creates and returns a variable containing the series of time distances between captures
- getTimeSecs() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the timestamp for this capture
- getTimeString() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the timestamp for this capture as a string
- getTimeString(SimpleDateFormat) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
returns the timestamp for this capture as a string
- getTimeSum() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
returns the amount of time covered by the moves
- getTimeSynchronizedCaptures(CaptureVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
synchronize the two CaptureVariables, so the precise locations at each time are interpolated
- getTinyStepPath(int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
traces the current selected path in small increments
- getTopLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
returns the y coordinate for labels on the top of the frame
- getTotal() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- getTotalPaintedPathAreaSize() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
makes the polygon that is covered by all the moves at a given width.
- getTotalsMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a matrix in which cells from actor and receiver section
of the ContingencyTable have been summed into a total cell value
- getTotalSum() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the sum for a particular row of the table
- getTProbability(double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the one-tailed probability for a t value such as this or greater under the
normal Curve (t Distribution) starting at positive infinity with a mean of zero and
a variance or 1 in Algorithn AS 3 Appl.
- getTProbability2Tail(double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the two-tailed probability for a t value such as this or greater under the
normal Curve (t Distribution) starting at positive infinity with a mean of zero and
a variance of 1 in Algorithn AS 3 Appl.
- getTracker() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
returns the tracker that controls the interface
- getTrackingJobSetting(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
return one tracking job
- getTrackingJobSetting(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
returns a specific tracking jobs
- getTrackingJobSettingsGroup() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
returns the group of tracking jobs
- getTransitions() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the transitions among consecutive values in form of a matrix
- getTriggerProc() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
-
lists the info
- gettTestResults(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
obtains the t-Test results for the variable
- gettValue(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector as a
double
- getU() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
-
Return upper triangular factor
- getU() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
-
Return the left singular vectors
- getUSBDevices() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
-
returns the USB devices
- getUSBDevices(boolean) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
-
returns the USB devices
- getUseRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns whether a given row can be used.
- getV() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
-
Return the eigenvector matrix
- getV() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
-
Return the right singular vectors
- getV(Double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns V for the Modified Rayleigh Test for Uniformity vs.
- getValue() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
returns the double value for the cell
- getValue(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
-
returns the output voltage on a channel.
- getValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the object stored at a given row of the Vector
- getVarCovarMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
calculates a variance/covariance matrix for continuous, dependent variables.
- getVarCovarMatrixJ(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
-
calculates a correlation matrix for continuous, dependent variables.
- getVariable(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a particular variable designated by a reference number,
this corresponds to the zero-based order in which variables were
registered with the VariableOrganizer.
- getVariable(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a particular variable designated by a variable name
- getVariableDesignRole() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable design role
- getVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns whether a given column is currently chosen as X, Y, label or not selected
- getVariableDesignRoleString() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable design role as a character string
- getVariableFormat() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable format
- getVariableIndex(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the position in the vector for a particular variable
this corresponds to the zero-based order in which variables were
registered with the VariableOrganizer.
- getVariableIndex(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns the index of a particular variable designated by a variable name
- getVariableMeans() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
lists the Variables registered with the VariableOrganizer
- getVariableNames() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
return the names of all variables
- getVariableType() - Method in class com.lobsterman.JavaGrinders.Variable
-
returns the variable type
- getVarianceValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the average for values stored in the Vector
- getVectorsFromLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
returns the distances from one specific location
- getVendorID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getVendorName_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getVendorName_uvc() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- getVersion() - Static method in class com.lobsterman.JavaGrinders.control.JavaGrinders_Control
-
- getVersion(int) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
-
Get the version of a BlinkM at a specific address
- getVersion() - Static method in class com.lobsterman.JavaGrinders.Jama.JavaGrinders_Jama
-
- getVersion() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
-
- getVersion() - Static method in class com.lobsterman.JavaGrinders.spatial.JavaGrinders_Spatial
-
- getVersion() - Static method in class com.lobsterman.JavaGrinders.Tracker.JavaGrinders_Tracker
-
returns build and version of the Tracker part of the JavaGrinders library
- getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCRecordProc
-
makes the ImagePixels from the video source
- getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
-
fill the basic uncompressed image data into its proper slot
- getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVRecordProc
-
fill the basic uncompressed image data into its proper slot
- getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
fill the basic uncompressed image data into its proper slot.
- getVideoProducer() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
returns the producer for recording to an AVI movie
- getVLabelPos(double) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
returns the horizontal position for the String
- getVoltage(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
-
returns the output voltage on a channel.
- getVolume(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
obtains the volume of a space with width and height around the Vector
- getVTilePosition() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
gets the horizontal tile position for the tracking job
- getWatsonU2Probability(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
returns the probability for a given Watson U2 statistic
- getWatsonU2Results(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns the results from an analysis of differences in mean angles for a variable of locations
- getWatsonWilliamsFResults(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns the results from an analysis of differences in mean angles for a variable of locations
- getWheelerWResults(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
returns the results from an analysis of differences in mean angles for a variable of locations
- getX() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
retrieves the x component
- getX() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Returns the x-coordinate.
- getXAxisDirection() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the directions of the x axis in the gridspace
- getXGrid() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the x grid for the Gridpsace3D
- getXPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the x coordinate array of the polygon
- getXs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the x coordinates as a Vector
- getXs(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
return the Vector for x coordinates
- getXScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the scale of the x Axis
- getXScale() - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
-
returns the x scale for plotting the coordinates
- getXVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the first dependent variable of the Organizer
- getXY() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Scales a single location to a frame's x and y scale values
- getXYAngle(Point3f, Point3f) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Return the heading in radians.
- getXYAngles() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
returns a variable containing the angular speeds in deg/sec
- getXYAngleSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns a variable containing the angular speeds in deg/sec, positivr in one direction, negative in the other
- getXYBorders() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the Rectangle bordering the Gridspace
- getXYDeg() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
retrieves the longitude component in degrees - the angle if 2D only in xy
- getXYDeg() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Return the XY heading in degrees.
- getXYDeg(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the angle in degrees to another point.
- getXYDirectionRad() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the direction of the target
- getXYDirectionRad(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the direction of the target
- getXYDirectionToRad(SpatialVector) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
get the direction of the target
- getXYFromPCScores(double, double, float[], float[]) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the factor matrix of the object outline for orientation
- getXYMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
returns the default map dimensions for the xy plot of the data
- getXYRad() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
retrieves the longitude component in radians - the angle if 2D only in xy
- getXYRad() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Return the latitudinal heading in radians.
- getXYRad(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the angle in degrees to another point.
- getXYRatio() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the ratio of x vs y dimensions
- getXYZMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
returns the default map dimensions for the xyz plot of the data
- getXZAngle(Point3f, Point3f) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Return the heading in radians.
- getXZDeg() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
retrieves the latitude component in degrees
- getXZDeg() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Return the latitudinal heading in radians.
- getXZDeg(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the angle in degrees to another point.
- getXZMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
returns the default map dimensions for the xz plot of the data
- getXZRad() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
retrieves the latitude component in radians
- getXZRad() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Return the longitudinal heading in radians.
- getXZRad(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns the angle in degrees to another point.
- getXZRatio() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the ratio of x vs z dimensions
- getY() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
retrieves the y component
- getY() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Returns the y-coordinate.
- getYAxisDirection() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the directions of the y axis in the gridspace
- getYGrid() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the y grid for the Gridpsace3D
- getYPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the x coordinate array of the polygon
- getYs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the x coordinates as a Vector
- getYs(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
return the Vector for y coordinates
- getYScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the scale of the y Axis
- getYScale() - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
-
returns the x scale for plotting the coordinates
- getYVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the first independent variable of the Organizer
- getYVariableNames() - Method in class com.lobsterman.JavaGrinders.Analyzer
-
returns the matrix of all continuous, dependent variables.
- getYZAngle(Point3f, Point3f) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
Return the heading in radians.
- getYZMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
returns the default map dimensions for the yz plot of the data
- getZ() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
retrieves the z component
- getZAxisDirection() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the directions of the z axis in the gridspace
- getZeroCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns the number of empty cells for the ContingencyTable
- getZGrid() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the z grid for the Gridpsace3D
- getZPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the x coordinate array of the polygon
- getzQuantiles() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to
its mean
- getZs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
returns the x coordinates as a Vector
- getZs(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
return the Vector for z coordinates
- getZScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the scale of the z Axis
- getzTransform() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns a variable containing each values relative to
its mean
- go() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- GoodnessOfFitResults - Class in com.lobsterman.JavaGrinders
-
holds a set of results obtained for an analysis of a contingency table
- GoodnessOfFitResults(int, int, double[], int) - Constructor for class com.lobsterman.JavaGrinders.GoodnessOfFitResults
-
Standard constructor
- GrahamPt2D - Class in com.lobsterman.JavaGrinders.Utilities
-
The Point class is an immutable data type to encapsulate a
two-dimensional point with real-value coordinates.
- GrahamPt2D(double, double) - Constructor for class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
-
Initializes a new point (x, y).
- GrahamScan - Class in com.lobsterman.JavaGrinders.Utilities
-
- GrahamScan(GrahamPt2D[]) - Constructor for class com.lobsterman.JavaGrinders.Utilities.GrahamScan
-
- GraphColorSchemes - Class in com.lobsterman.JavaGrinders
-
defines a number of pleasant color schemes
- GraphColorSchemes(boolean) - Constructor for class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- Grid - Class in com.lobsterman.JavaGrinders
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- Grid() - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with maximum values provided
- Grid(double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with maximum values provided
- Grid(double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float, boolean) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(NumberVariable, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- Grid(double, double, float, boolean, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
-
standard constructor for the Grid class with minimum and maximum values provided
- GridSpace3D - Class in com.lobsterman.JavaGrinders.spatial
-
provides the description of a 3D space for graphs
- GridSpace3D() - Constructor for class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
empty constructor for the GridSpace3D class with coordinates provided
- GridSpace3D(double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
constructor for the GridSpace3D class with x, y, z grids provided
- GridSpace3D(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
standard constructor for the GridSpace3D class with coordinates provided
- Group - Class in com.lobsterman.JavaGrinders.spatial
-
coordinates a group of animals
- Group() - Constructor for class com.lobsterman.JavaGrinders.spatial.Group
-
Standard constructor for the Group class
- Group(Constraint) - Constructor for class com.lobsterman.JavaGrinders.spatial.Group
-
Standard constructor for the Group class
- Group(GridSpace3D) - Constructor for class com.lobsterman.JavaGrinders.spatial.Group
-
Standard constructor for the Group class
- GroupAnalyzer - Class in com.lobsterman.JavaGrinders
-
Analyzer class - sets up a generic data analyzer, * it does not do much aside from planting the general roots for analyzers
- GroupAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.GroupAnalyzer
-
Standard constructor
- gRowHighlitedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- gRowSaveSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- gRowSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
-
- growToInclude(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
returns the constraint that includes the new one as well.
- GValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- GValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- GValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
-
- SAMPLE_RATE - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHSoundUtils
-
- sampleConstantStepSize(long) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
returns a specific Animal from the entire group
- satMaxValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
-
- satMinValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
-
- saveExternalRefSettings - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- saveFile(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
user selects a file to save
- saveFileChooser() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
user selects a file to save
- saveFileDialog(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
user selects a file to save
- saveRefToPNG() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
saves the reference frame to a file
- saveRowsToFile(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
saves all data values to a text file
- saveRowsToFile(int, int, boolean, String) - Method in class com.lobsterman.JavaGrinders.Variable
-
saves data values for a range of rows to a text file
- saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
saves the select flag for all currently selected rows
- saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
saves the select flag for all rows
- saveTheContent(File) - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
-
handles a save as event
- saveTimeNamedFile(String, String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
user selects a file to save
- saveToSVGFile(String) - Method in class com.lobsterman.JavaGrinders.Presenter
-
saves the content of the PresenterPanel to an SVG file
- scale(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Multiplies this vector by a scalar and keeps the result.
- scale(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Multiplies this vector by a scalar and keeps the result.
- scale(Point) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
-
scales a rectangle from native to window coordinates
- scale(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
-
scales a rectangle from native to window coordinates
- scaleMouseLocation(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
translates the mouse Capture from screen coordinates to rows and columns of the matrix
- scaleWindow() - Method in class com.lobsterman.JavaGrinders.AppEngine
-
scales the frame of the tracker to fit onto the screen.
- scaleWindow() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
scales the frame of the tracker to fit onto the screen.
- scanActiveOnLAN() - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
-
- scanI2CBus_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
scan the i2c bus for devices
- scanI2CBus_FTDI2xx(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
scan the i2c bus for devices
- scanI2CBus_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
scan the i2c bus for devices
- scanI2CBus_LinkM(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
scan the i2c bus for devices
- scanNetworkInterfaces() - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
-
- scrambleOrder(Vector<?>) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
-
scrambles the order of elements in a vector
- SDY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SE - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- selectAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value greater than the one provided
- selectAbove(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value greater than the one provided
- selectAbove(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that contain a double value above a given double value with the option
to select from the previous set
- selectAboveDistance(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value less than the one provided
- selectAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value greater or equal than the one provided
- selectAboveEqual(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value greater than the one provided
- selectAboveSpeed(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value less than the one provided
- selectAfter(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value greater than the one provided
- selectAfterEqual(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value greater than the one provided
- selectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows to true
- selectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows to true
- selectAngleRangeN(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
select all rows with a value between the lower and upper limits provided.
- selectBefore(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value greater than the one provided
- selectBeforeEqual(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value greater than the one provided
- selectBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value less than the one provided
- selectBelow(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value less than the one provided
- selectBelow(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that contain a double value below a given double value with the option
to select from the previous set
- selectBelowDistance(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value less than the one provided
- selectBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value less or equal than the one provided
- selectBelowEqual(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value less or equal than the one provided
- selectBelowSpeed(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value less than the one provided
- selectBetween(long, long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value greater equal the start time and less or equal the end time
- selectCell(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
selects a cell in the data matrix if it can be edited
- selectDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all duplicate rows
- selectEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value greater or equal than the one provided
- selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for every nth row to true
- selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for every nth row to true
- selectFirstValidCell() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
returns the first valid cell in the data matrix
- selectInArea(GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value locatad within the 3D box
- selectInShape(Shape, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value locatad within the 3D box
- selectNextValidCell() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
finds and selects the first valid cell in the data matrix
- selectRange(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
select all rows with a value between the lower and upper limits provided.
- selectRange(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
select all rows with a value between the lower and upper limits provided when moving in a clockwise fashion.
- selectRange(double, double, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
select all rows with a value between the lower and upper limits provided.
- selectRange(Variable, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that contain a double value between two given double values with
the option from the previous set
- selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for all rows to true
- selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the select flag for all rows to true
- selectUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
-
restricts the select flag to those rows that are selected and not missing
- selectValue(String, boolean) - Method in class com.lobsterman.JavaGrinders.StrVariable
-
select all rows with a String that matches the one provided
- selectValue(Object, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
selects rows that match a given object from the currently selected set of rows
- selectValue(Variable, Object, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
selects all rows that match a given value in a given variable with the option to select
from the previous set
- selectWithinDistanceFrom(double, SpatialVector, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a value located within distance from a specific point
- selectXAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with an X value greater than the one provided
- selectXAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with an X value greater or equal than the one provided
- selectXBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with an X value less than the one provided
- selectXBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with an X value less or equal than the one provided
- selectYAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Y value greater than the one provided
- selectYAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Y value greater or equal than the one provided
- selectYBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Y value less than the one provided
- selectYBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Y value less or equal than the one provided
- selectZAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Z value greater than the one provided
- selectZAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Z value greater or equal than the one provided
- selectZBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Z value less than the one provided
- selectZBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
select all rows with a Z value less or equal than the one provided
- sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.CLIInterface
-
- sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
runs a command
- sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
send a command
- sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.NetworkInterface
-
- sendCommand(OSCMessage) - Method in class com.lobsterman.JavaGrinders.control.OSCInterface
-
- sender - Variable in class com.lobsterman.JavaGrinders.control.OSCInterface
-
- sendStartCommand() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
controls a start command
- sendStartCommand(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
controls a start command
- sendStopCommand() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
controls a stop command
- sendStopCommand(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
controls a stop command
- sensChannelsInUse - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- sensorChanged(SensorChangeEvent) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
handles the incoming data from the sensor
- SensorDeviceOperator - Class in com.lobsterman.JavaGrinders.control
-
the main class retrieving analog data
- SensorDeviceOperator(int, int) - Constructor for class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
-
standard constructor for the DeviceController class
- SensorDeviceOperator(int) - Constructor for class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
-
standard constructor for the DeviceController class
- SensorDeviceOperator_movingMean - Class in com.lobsterman.JavaGrinders.control
-
the main class retrieving analog data
- SensorDeviceOperator_movingMean(int, int) - Constructor for class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
-
standard constructor for the DeviceController class
- sensorIsRunning - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
- sensorNumber - Variable in class com.lobsterman.JavaGrinders.control.DataValue
-
- sensorTraces - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- sensorValue - Variable in class com.lobsterman.JavaGrinders.control.DataValue
-
- SerialInputStream - Class in com.lobsterman.JavaGrinders.control
-
also provides support for performing blocking reads
with timeouts.
- SerialInputStream(SerialPort) - Constructor for class com.lobsterman.JavaGrinders.control.SerialInputStream
-
Instantiates a SerialInputStream for the given SerialPort
Do not create multiple streams for the same serial port
unless you implement your own synchronization.
- SerialOutputStream - Class in com.lobsterman.JavaGrinders.control
-
It is instantiated by passing the constructor a SerialPort
instance.
- SerialOutputStream(SerialPort) - Constructor for class com.lobsterman.JavaGrinders.control.SerialOutputStream
-
Instantiates a SerialOutputStream for the given SerialPort
Do not create multiple streams for the same serial port
unless you implement your own synchronization.
- serialPort - Variable in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
- services - Static variable in class com.lobsterman.JavaGrinders.control.USBDeviceManager
-
- services - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
-
- session - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
-
- set(int, int, double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Set a single element.
- Set22Comp_7 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- set2DArray(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets a 2D array of doubles for the ContingencyTable
- Set33Char_6 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- Set37Boat_3 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- Set49Child_4 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- Set55Indep_5 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- Set59Hunt_4 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- Set59WM_2 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- Set61Indust_5 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
-
- setAnalysisProcs(AnalysisProc, AnalysisProc) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
sets the procedues used to analyse the moves
- setAnglesType() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
sets the variable to type ANGLES
- setAnglesType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type ANGLES
- setAOI(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the area of interest
- setAperture_Auto(Pointer<UvcLibrary.uvc_device_handle>, boolean) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- setApertureTime(Pointer<UvcLibrary.uvc_device_handle>, int) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- setApertureTime(int) - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
-
set the aperture time for the UVC Camera
- setApplyFilterBeforeDetection(boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets whether an unsharpen filter should be applied to the frame prior to analysis
- setAutoColumnColors() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
stacks a number of dependent variables on top of each other,
their respective variable names are stored in a second variable
- setAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
-
automatically finds and sets the number of units in the space
- setAutoReferenceBackground(TrackingJobSetting, List<SGPolygon>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
returns a guess for the objects to track
- setAxisDirections(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the directions of the axes in the gridspace
- setAxisDirections(boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the directions of the axes in the gridspace
- setBackColor(Color) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- setbgColor(Color) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
sets a color for the background
- setBGImage(Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the Presenter that owns the Panel
- setBusID_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setByteLength(int) - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
sets the byte length
- setByteValue(int, byte) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
-
sets the output value on a channel.
- setByteValue(byte) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the byte value on a channel.
- setByteValue(int) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the value for the channel
- setByteValue(int, byte) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the output value on a channel.
- setByteValue(DataChannelDescriptor, byte) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the output value on a channel.
- setCameraID(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets the camera ID
- setCellValue(int, int, double) - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
-
sets one element for this matrix with a double
- setCellValue(int, int, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets a single element for this matrix with a double
- setCenterPixel(Pixel) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
set the center of the target
- setChannel(int) - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
-
sets the channel
- setChannelAccess(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the interface to polling or event-driven
- setChannelID(int) - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
sets a channel
- setColLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular column label for the ContingencyTable
- setColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setColorLabel(Color) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the color for the color tracking job
- setColumnPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the expected probabilities for different columns
- setCompareHighValue(int) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
sets the high value for a comparison
- setCompareLowValue(int) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
sets the low value for a comparison
- setConnect(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
sets whether the Captures should be visually connected
- setConnect(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Returns whether the move should be visually connected
- setConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
installs a spatial constraint for the variable
- setConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.Group
-
install a spatial constraint for the Group
- setConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
links an arena to the framework
- setContinuousType() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
sets the variable to type CONTINUOUS
- setControlInterface(DeviceInterface) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
sets the control interface
- setCoordMapRect(Dimension) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the Presenter that owns the Panel
- setCoordMapRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the Presenter that owns the Panel
- setCParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets the number of columns for the matrix
- setCRParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets the number of columns for the matrix
- setCurrent(String, int) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- setCustomColorRow(int, Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the custom color for a given row
- setDarkestPixel(Pixel) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
- setDataChannelDescriptor(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
-
lists the info
- setDataFileName(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the data file name
- setDataNotes(String) - Method in class com.lobsterman.JavaGrinders.BasicData
-
- setDataOutFile(boolean) - Method in class com.lobsterman.JavaGrinders.control.Experiment
-
create a new text file for the captured locations
- setDataOutFile() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
create a new text file for the captured locations
- setDataRate(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
set the data rate
- setDataTimeStamp(long) - Method in class com.lobsterman.JavaGrinders.BasicData
-
- setDataValue(double) - Method in class com.lobsterman.JavaGrinders.BasicData
-
- setDefaultbgColor() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
sets the color of the background to the default background color
- setDefaultfgColor() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
sets the color of the content to the default foreground color
- setDefaultRowColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets default labels for row and column labels for the ContingencyTable
- setDefVideoDimensions(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
-
sets constructor for the TrackingJobSettingsGroup class.
- setDelimiters(String) - Method in class com.lobsterman.JavaGrinders.DataFileParser
-
sets the delimiters for the fields in the text file as a regular expression
- setDeviceController(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
sets the device controller
- setDeviceName(String) - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
sets the name of the device
- setDeviceName(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setDeviceNumber(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setDeviceSensor(SensorDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
-
sets the device sensor
- setDeviceSerialNumber(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setDeviceType(String) - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
sets the type of the device
- setDeviceType(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the mode for the DeviceInterface
- setDeviceTypeStr(String) - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
-
lists the info
- setDeviceVendor(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setDeviceVersion(String) - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
sets the version of the device
- setDiagonal(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the diagonal of the ContingencyTable and resets all cell values
- setDimensions(Rectangle) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
set the dimensions of the GridSpace3D class with a rectangle
- setDimensions(SpatialVector, SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
set the dimensions of the GridSpace3D class with x and y coordinates
- setDimensions(double, double, double, double, double, double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the dimensions for the GridSpace3D class with coordinates provided
- setDimensions(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
set the dimensions of the GridSpace3D class with x and y coordinates
- setDimensions(NumberVariable, NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
set the dimensions of the GridSpace3D class with x, y, and z coordinates
- setDimensions(NumberVariable, NumberVariable, float) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
set the dimensions of the GridSpace3D class with x and y coordinates and a scaling factor
- setDimensions(NumberVariable, NumberVariable, NumberVariable, float) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
set the dimensions of the GridSpace3D class with x and y coordinates and a scaling factor
- setDimensions(int, int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- setDirection(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
-
sets the direction of the Axis
- setDirectionRad(double) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the direction of the object in radians
- setDirections(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.MapDimensions
-
sets the x and y directions for the MapDimensions
- setDParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets the diagonal for the matrix
- setEnabled(boolean) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
enables the channel
- setEnabled(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
enabling the channel
- setEnabled(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
-
returns the output voltage on a channel.
- setEndCapture(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Sets the end capture of the move
- setEngaged(boolean) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
engages the channel
- setEngaged(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
engaging the channel
- setEngaged(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
-
sets the device to a specific position
Typically, the range might be 25 - 180 degrees, but this depends on the servo, each
corresponding approximately to an angle in degrees.
- setEngaged(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
-
sets the channel to engaged
- setExternalData(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the Object to print after the data
- setExternalMovesDistribution(MoveVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
install an external distribution of Moves to sample from
- setfgColor(Color) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
sets a color of the content
- setFillColor(Color) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
sets the fill color of the bars
- setFocus_Auto(Pointer<UvcLibrary.uvc_device_handle>, boolean) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- setFocusDistance(Pointer<UvcLibrary.uvc_device_handle>, int) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- setFocusDistance(int) - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
-
set the aperture time for the UVC Camera
- setFontSize(int) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
sets the size of the font for the cell
- setForeColor(Color) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
- setFormula(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a formula for a given vector
- setFps(float) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
set the fps of produced images.
- setFrameRate(double) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the preferred frame rate
- setFrameRate(float) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets the preferred rate for frames/second
- setFrameSize(double) - Method in class com.lobsterman.JavaGrinders.Presenter
-
scales the frame to a given screen size
- setFrameSize(Dimension) - Method in class com.lobsterman.JavaGrinders.Presenter
-
sets the frame to a given screen size
- setFrameTimeString(String) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
sets the number of captures faded into a vanishing trail.
- setGrid(int, Grid) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the grid used in mapping the points
- setGridInterval(double) - Method in class com.lobsterman.JavaGrinders.Grid
-
sets the grid interval for the axis
- setGrids(Grid, Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the dimensions for the GridSpace3D class with coordinates provided
- setGrids(Grid, Grid, Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the dimensions for the GridSpace3D class with coordinates provided
- setGridSpace3D(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
creates a PresenterPanel with given dimensions
- setGridSpace3D(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
-
sets the GridSpace used in mapping the points
- setGroup(Group) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
links a group of animals to the framework
- setHighliteColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a highlite color for the animal
- setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the highlite flag for a given row
- setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the highlited info for a row
- setHotShapes(List<Shape>) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the hot regions
- setHotSpace(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the current 3D space that is "hot".
- setHypothesisPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
sets the expected probabilities for different columns
- setI2CHardware() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
sets the i2c hardware
- setImage(Image) - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
-
sets the image to display in the panel
- setImage(Image) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
-
sets an Image for the Component
- setImage(Image) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
sets an Image for the Component
- setInterface(Object) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the provided interface for the device controller
- setInterfaceType_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setItsName(String) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the name for the interface
- setItsRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
-
updates the analysis areas for the tile group
- setItsRenderer(FrameRenderer) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
get the frame renderer
- setLabel(String) - Method in class com.lobsterman.JavaGrinders.Descriptives
-
sets a label for the descriptives as a tag in reporting
- setLabelBars(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
- setLabelEveryN(int) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
-
- setLabelXGrid(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
- setLabelYGrid(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
- setLatLong(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
-
sets the CaptureVariable as a latitude longitude coordinate type
- setLatLong(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
sets the SpatialVector as a latitude longitude coordinate type
- setLength(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
Scales the vector to a particular length
- setLength(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Scales the vector to a particular length
- setLibraryVersion(float) - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
sets the library version
- setLineColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a line color for the animal
- setLocation(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
positions the cell at a given screen Capture
- setLocationColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a location color for the animal
- setLocationsType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type LOCATIONS
- setLock(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets whether a variable is locked for further selections, modifications, etc.
- setMatrix(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
-
- setMatrix(int, int, int, int, Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Set a submatrix.
- setMatrix(int[], int[], Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Set a submatrix.
- setMatrix(int[], int, int, Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Set a submatrix.
- setMatrix(int, int, int[], Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Set a submatrix.
- setMatrixDimensions(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new matrix dimensions for the ContingencyTable
- setMatrixSize(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the dimensions of the DominanceTable
- setMaxDiff(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
- setMaxVoltage(float) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the output voltage on a channel.
- setMemoryRegister(int) - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
-
specifies a memory register
- setMissingRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the missing flag for a given row
- setMoveDirection(boolean) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- setMoveDirection(int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- setMovementCutoff(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
sets the cutoff value for whether the object has moved or not
- setMovementCutoff(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
fills and returns the Descriptives with the default cutoff for movement
- setName(String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the name for the ContingencyTable
- setName(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the name of the variable to the String provided
- setNColumns(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Get column dimension.
- setNControlInterfaceChannels(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the number of serial device controllers registered with the interface
- setNominalType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type NOMINAL
- setNotes(String) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the notes for the variable
- setNotOnDuration(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the duration for which the controller is forced off
- setNRows(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Set row dimension.
- setNRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the number of rows for the Variable
- setNRows(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the number of rows for the VariableOrganizer
- setNTraces(int) - Method in class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
-
sets the number of traces in the Panel
- setNUnits(int) - Method in class com.lobsterman.JavaGrinders.Grid
-
sets the number of units in the space
- setNUnits(int, int, int) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the number of x, y, z units for the Gridspace
- setNUnits(int, int) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the number of x, y units for the Gridspace
- setObjectMetrics(double, double, double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
sets whether the TargetCaptureData record was found on its main pass through the image
- setObjLength(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
sets the object length for the target
- setObjSizeVar(float) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the acceptable amount of variation in object size
- setObjWidth(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
sets the object length for the target
- setOnDuration(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the duration for which the controller is forced on
- setOrdinalType() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable to type ORDINAL
- setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
-
sets the VariableOrganizer instance to the one provided
- setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a VariableOrganizer for the Variable
- setOutputState(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
-
sets the output state
- setPanelSizeToFit(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
-
creates the Panel for presenting the active data
- setParam(int, int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets the parameters for the matrix
- setPeakArea(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- setPeakHeight(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- setPeakTime(long) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- setPeakWidth(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- setPlotDimensions() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
sets the plot dimensions
- setPlotDimensions() - Method in class com.lobsterman.JavaGrinders.Presenter
-
sets the plot dimensions
- setPlotTargetStyle(int) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
-
- setPort_usb(UsbPort) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setPortID_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setPortParent_usb(UsbHub) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setPosition(int, double) - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
sets the position of the controller
- setPosition(double) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the device to a specific position
- setPresenterPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
sets the panel for the presenter
- setPresenterPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
-
sets the panel for the presenter
- setPreviousInterval(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
-
- setPreviousTCDs(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the previous TargetData
- setPrimeUse(boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
sets whether the TargetCaptureData record was found on its main pass through the image
- setProductID_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setProductName_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setProductName_uvc(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setProductTypeID_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setProductTypeString_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setRecordProc(RecordProc) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
-
sets the RecordProc for the tracker
- setRecordProc(RecordProc) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets the RecordProc for the tracker
- setReferenceImageEdits(List<ImageEdit>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets some reference edits for the RecordProc
- setRelOrigin(Point) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the analysis rectangle for the tracking job
- setReportToConsole(boolean) - Method in class com.lobsterman.JavaGrinders.Stringer
-
controls whether output goes to the console
- setReportType(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
- setRowColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
returns a particular column label for the ContingencyTable
- setRowLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets new row and column labels for the ContingencyTable
- setRowOrder(Vector<Object>) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the rowOrder for the variable
- setRowOrderRow(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the number of rows for the Variable
- setRParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets the number of rows for the matrix
- setSameXYScale(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
x and y Axis measures are at the same scale
- setSameXYZScale(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
x, y and z Axis measures are at the same scale
- setScale(Dimension) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
-
sets the scale for plotting the coordinates
- setScale(Dimension) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
sets the scale for plotting the coordinates
- setSeed(long) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
-
- setSelectedCellValue(double) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets the value for the currently selected cell in the data matrix
- setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the select flag for a given row
- setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets the selection info for a row
- setSelectRows(Object) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets all selected rows to a particular value
- setSelectRowsToMissing() - Method in class com.lobsterman.JavaGrinders.Variable
-
sets all selected rows to missing
- setSensorInterface(DeviceInterface) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
sets a sensor interface
- setSerialNumber(int) - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
sets the serial number of the device
- setSerialNumberString_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setShowGrids(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
sets whether the grid lines will be drawn
- setShowGridX(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
sets whether the horizontal grid will be drawn
- setShowGridY(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
sets whether the vertical grid will be drawn
- setSignalGenerator(SignalGenerator) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the operator's signal generator
- setsOutputVoltage(float) - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
-
sets the output voltages
- setSParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets the shape the matrix
- setSpatialMapLook(int) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
-
sets the look of the Map
- setSpatialParameters(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
links an arena to the framework
- setSpeed(int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
-
- setStartCapture(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Sets the start capture of the move
- setState(int) - Method in class com.lobsterman.JavaGrinders.control.LEDButton
-
- setStatusLED(LEDButton) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the status LED of the tracker
- setString(String) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
sets string content to the string provided and gets rid of the numeric
value for the cell
- setSubRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
-
- setSubRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
set the export region
- setTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
-
Installs a crosstabulation (i.e., frequency) table.
- setTable(InteractionTable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
-
Installs a crosstabulation (i.e., frequency) table that summmarizes interactions * between entities.
- setTablePs(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
-
sets the expected probabilities for different columns
- setTargetDescriptor(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
sets whether the TargetCaptureData record was found on its main pass through the image
- setTargetDescriptor(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the targetDescriptor for the tracking job
- setTaskState(int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the task state of the RecordProc
- setTilePositions(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the tile position for the tracking job
- setTimeBetween(long) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
-
set the time between produced images in ms.
- setTimeBetweenFrames(float) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
-
sets the time between frames
- setTimeMilliSecs(long) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
sets the timestamp for this capture
- setTimeout(int) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
-
Set the default timeout (ms) of this SerialInputStream.
- setTimeRef(Date) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
sets the timestamp for this capture
- setTimeSecs(long) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
-
sets the timestamp for this capture
- setTotal(int) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- setTraceTimes(long) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
start logging analog sensor values
- setTracker(TrackerEngine) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
installs the tracker that controls the interface
- setTracker(TrackerEngine) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVRecordProc
-
sets the tracker which controls this RecordProc.
- setTracker(TrackerEngine) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
sets the tracker which controls this RecordProc
- setTrackingJobSettingsGroup(TrackingJobSettingsGroup) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets the tracking jobs
- setTrackingType(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
-
sets the tracking type and type string for the tracking job
- setTriggerProc(TriggerProc) - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
-
lists the info
- setTriggerProc(TriggerProc) - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
-
sets the trigger procedure for the interface
- setup() - Method in class com.lobsterman.JavaGrinders.control.Arduino
-
setup the device
- setupAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
coordinates what needs to be done at the start of analysis
- setupAppFramework() - Method in class com.lobsterman.JavaGrinders.AppEngine
-
sets the video component for the tracking application, either a live video display or a movie player
- setupButtons() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
labels the analysis buttons
- setupButtons() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
-
labels the analysis buttons
- setupDataLogging() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
start logging analog sensor values
- setUpDone - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- setupECells() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets up the expected cells, first it sets up the cells in memory,
then it creates the applet's user interface elements to go with it.
- setupECol(int, String) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
this section sets up a column for expected frequencies, where the content
is inactive, it then adds a summary cell and fills it with a string provided
- setupERow(int, String) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
this section sets up a row for expected frequencies, where the content
is inactive, it then adds a summary cell and fills it with a string provided
- setupFields() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
this sets up the various fields of the applet
- setupMenu - Variable in class com.lobsterman.JavaGrinders.AppEngine
-
- setupOCells() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
sets up the observed cells, first it sets up the cells in memory,
then it creates the applet's user interface elements to go with it.
- setUVCCameraSettings(Pointer<UvcLibrary.uvc_device_handle>, int, short) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- setValidRange(int, int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the valid range of the interface
- setValue(double) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
-
installs a double value for the cell
- setValue(float) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
sets the value for the channel
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
sets the output value on a channel.
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
-
sets the device to a specific position
Typically, the range might be 25 - 180 degrees, but this depends on the servo, each
corresponding approximately to an angle in degrees.
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
-
sets the output value on a channel.
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
-
sets the output value on a channel.
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
-
sets the device to a specific position
Typically, the range might be 25 - 180 degrees, but this depends on the servo, each
corresponding approximately to an angle in degrees.
- setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
-
sets a general object for a given row of the Vector
- setValue(int, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
sets a general object for a given row of the Vector
- setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
-
sets a general object for a given row of the Vector
- setValue(int) - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
-
sets the value for the pixel coordinates
- setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a general object for a given row of the Vector
- setValue(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets an integer value for a given row of the Vector
- setValue(int, float) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a float value for a given row of the Vector
- setValue(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a double value for a given row of the Vector
- setValue(int, char) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a char value for a given row in the Vector
- setValue(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets a boolean value for a given row of the Vector
- setVanishingTrail(int) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
sets the number of captures faded into a vanishing trail.
- setVanishingTrail(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets the number of captures faded into a vanishing trail.
- setVanishingTrailAlpha(float) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
-
sets whether past captures fade the longer ago they occurred
- setVariable(Variable, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
returns a particular variable designated by a reference number,
this corresponds to the zero-based order in which variables were
registered with the VariableOrganizer.
- setVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the design role for the variable
- setVariableDesignRole(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets a design role for a column
- setVariableDesignRoleForAll(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sets a design role for every column (i.e., X, Y, label or not selected)
- setVariableFormat(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable format
- setVariableType(int) - Method in class com.lobsterman.JavaGrinders.Variable
-
sets the variable type
- setVendorID_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setVendorName_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setVendorName_uvc(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
-
- setVideoProducer(Producer) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
sets the producer for recording to an AVI movie
- setVoltage(int, double) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
-
sets the output voltage on a channel.
- setWarnings(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
-
controls whether warnings are issued
- setWidth(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
-
sets the width of the path
- setWidth(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the end capture of the move
- setX(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
sets x component
- setXGrid(Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the x grid for the Gridpsace3D
- setXScale(double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the scale of the x Axis
- setXYDeg(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
sets the longitude component in degrees
- setXYDirectionRad(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
sets whether the TargetCaptureData record was found on its main pass through the image
- setXYMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
sets the map dimensions for the xy plot of the data
- setXYRad(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
sets the longitude component in radians
- setXYZMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
sets the map dimensions for the xyz plot of the data
- setXZDeg(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
sets the latitude component in degrees
- setXZMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
sets the map dimensions for the xz plot of the data
- setXZRad(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
-
sets the latitude component in radians
- setY(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
sets y component
- setYGrid(Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the y grid for the Gridpsace3D
- setYScale(double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the scale of the y Axis
- setYZMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
sets the map dimensions for the yz plot of the data
- setZ(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
sets z component
- setZGrid(Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the z grid for the Gridpsace3D
- setZScale(double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
-
sets the scale of the z Axis
- SGPolygon - Class in com.lobsterman.JavaGrinders.Tracker
-
Implementation of a polygon in double precision
- SGPolygon() - Constructor for class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
empty constructor for the SGPolygon class.
- SGPolygon(Shape) - Constructor for class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
standard constructor for the SGPolygon class.
- shape - Variable in class com.lobsterman.JavaGrinders.Tracker.ImageEdit
-
- Shape_Ellipse - Static variable in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
-
- Shape_NONE - Static variable in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
-
- Shape_Rectangle - Static variable in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
-
- ShapeUtilities - Class in com.lobsterman.JavaGrinders.Utilities
-
Utility methods for Shape
objects.
- shiftExponent(double, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the number after shifting a given number of exponents
- shortToHexString(short) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the value of an short as a hexadecimal string
- shortToHexString(short, boolean) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the value of an short as a hexadecimal string
- showButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- showImage(Mat) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHImshow
-
converts an image from OpenCV to java space
- showImage(BufferedImage) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHImshow
-
converts an image from OpenCV to java space
- SHOWSETUP - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- showVideo(boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
-
turn on live video display
- shutDown() - Method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
-
- shuttingDown - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- sign() - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
returns the sign for each value of the variable
- SignalGenerator - Class in com.lobsterman.JavaGrinders.control
-
the main class controlling a CMA microinfusion pump
- SignalGenerator(DeviceInterface, float, int) - Constructor for class com.lobsterman.JavaGrinders.control.SignalGenerator
-
standard constructor for the Sine wave Generator
- signedArea() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the signed area of the polygon in screen pixels
- signedByteToInt(byte) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the value of an unsigned byte as an integer
- signedShortToInt(short) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
-
returns the value of an signed short as an integer
- sin2Sum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- SineWaveGenerator - Class in com.lobsterman.JavaGrinders.control
-
the main class controlling a CMA microinfusion pump
- SineWaveGenerator(DeviceInterface, float, int, float) - Constructor for class com.lobsterman.JavaGrinders.control.SineWaveGenerator
-
standard constructor for the Sine wave Generator
- SingularValueDecomposition - Class in com.lobsterman.JavaGrinders.Jama
-
Singular Value Decomposition.
- SingularValueDecomposition(Matrix) - Constructor for class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
-
Construct the singular value decomposition
- sinMean - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- sinSum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- Sinuosity - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- Skewness - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SocialAnimal - Class in com.lobsterman.JavaGrinders.socialModel
-
characterizes an animal as a social entity.
- SocialAnimal() - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
-
Empty constructor for the Animal class
- SocialAnimal(String) - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
-
Constructor for the Animal class
- SocialAnimal(String, Group) - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
-
Standard constructor for the Animal class
- SocialInteraction - Class in com.lobsterman.JavaGrinders.socialModel
-
characterizes an animal as a social entity.
- SocialInteraction() - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
-
Empty constructor for the SocialInteraction class
- solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.CholeskyDecomposition
-
Solve A*X = B
- solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
-
Solve A*X = B
- solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Solve A*X = B
- solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
-
Least squares solution of A*X = B
- solveTranspose(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Solve X*A = B, which is also A'*X' = B'
- sort() - Method in class com.lobsterman.JavaGrinders.Variable
-
sorts the values for all rows using a map of hashcodes
- sort(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sorts the values for all rows using a map of hashcodes
- sort(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
sorts the VariableOrganizer by the values in a variable
- sort2(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
-
sorts the values for all rows using a map of hashcodes
- sortAlongMoveVector(Vector<SpatialVector>) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the point of intersection of this move with a circle of a given radius
- sortReverseAlongMoveVector(Vector<SpatialVector>) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
-
Returns the point of intersection of this move with a circle of a given radius
- SpatialAnalyzer - Class in com.lobsterman.JavaGrinders.spatial
-
coordinates spatial analyses.
- SpatialAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialAnalyzer
-
Standard constructor for the SpatialAnalyzer class with a VariableOrganizer provided
- SpatialDescriptives - Class in com.lobsterman.JavaGrinders.spatial
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- SpatialDescriptives() - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
empty private constructor ensures that the only objects of this type are the elements
enumerated above
- SpatialModellingFramework - Class in com.lobsterman.JavaGrinders.spatial
-
provides the top-level interface for coordinating a spatially explicit model
- SpatialModellingFramework() - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
-
empty constructor
- SpatialVector - Class in com.lobsterman.JavaGrinders.spatial
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- SpatialVector(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
constructor specifying initial x, y, and z coordinates
- SpatialVector(double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Standard constructor for the 2D SpatialVector class with x and y coordinates provided
- SpatialVector(Point2D) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Standard constructor for the 2D SpatialVector class with x and y coordinates provided
- SpatialVector() - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
empty constructor
- speedMax - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- speedMean - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- speedMin - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- speedSD - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- speedVar - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- splitBiggestTarget(List<TargetCaptureData>, TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
splits targets if needed
- splitBoundByLength(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the ratio of major vs minor axis
- splitByLength(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
-
returns the ratio of major vs minor axis
- splitTargets - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- SpreadSheetInput - Class in com.lobsterman.JavaGrinders.Applets
-
implements a cell that handles input from a keyboard
- SpreadSheetInput(String, FrequencyMatrixApplet, Color, Color, int, int, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Applets.SpreadSheetInput
-
create a new field from a set of given values from an initial string
- sqr() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
calculate square for each cell
- sqrEquals() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
calculate square for each cell
- sqrt() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
calculate square root for each cell
- sqrtEquals() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
calculate square root for each cell
- SQUAREDEUCLIDIAN - Static variable in class com.lobsterman.JavaGrinders.DataTable
-
- SquarePulseTrainGenerator - Class in com.lobsterman.JavaGrinders.control
-
the main class controlling a CMA microinfusion pump
- SquarePulseTrainGenerator(Arduino, PWMPin, int, int) - Constructor for class com.lobsterman.JavaGrinders.control.SquarePulseTrainGenerator
-
standard constructor for the pulse train generator
- SquaresCrossproductResults - Class in com.lobsterman.JavaGrinders.parametric
-
provides the interface for obtaining descriptive statistics from continuous
variables.
- SquaresCrossproductResults() - Constructor for class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
empty constructor
- SS - Variable in class com.lobsterman.JavaGrinders.parametric.ParametricTerm
-
- SSE - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- SSM - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- SSMComplete - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- SSMP - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- SST - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
-
- SSX - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
- SSXY - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
- SSY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- stackYs() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
stacks a number of dependent variables on top of each other,
their respective variable names are stored in a second variable
- start() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
start the applet
- start(String) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
-
- start - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
-
- start - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
- start - Variable in class com.lobsterman.JavaGrinders.spatial.TimeDescriptives
-
- startAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
start the tracking
- startAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
controls starting the analysis
- startAnalysisTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
- startButton - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
- startDataIn() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
start collecting analog sensor values
- startDataIn_DirectPolling() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
start collecting analog sensor values
- startDataIn_DirectPolling(long) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
start collecting analog sensor values
- startDataIn_EventDriven() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
start collecting analog sensor values
- startEventInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
start the event interface
- startSignalGenerator() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
turn off the serial device
- startStreaming(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>, Pointer<UvcLibrary.uvc_frame_callback_t>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- startTimeDataIn - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
- startTrackingCycler() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
initializes the timing framework, either via a ProcRunner or a callback
- startUpDelay - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- stateChanged(ChangeEvent) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressDialog
-
- stationary - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- Statistics - Class in com.lobsterman.JavaGrinders.Utilities
-
implements support functions used in the JavaGrinders library
- Statistics() - Constructor for class com.lobsterman.JavaGrinders.Utilities.Statistics
-
- StatTablePresenter - Class in com.lobsterman.JavaGrinders
-
given a DataParser object, its content is formatted automatically and
presented as a JTable object placed within a scrollpane within a frame.
- StatTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.StatTablePresenter
-
Standard constructor for the DataTablePresenter class using a VariableOrganizer
- status - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
- STATUS_EMPTY - Static variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
- STATUS_FILLED - Static variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
- STATUS_UPDATE - Static variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
-
- STEREO - Static variable in class com.lobsterman.JavaGrinders.control.AudioInterface
-
- stErr - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
-
- stop() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
-
stop the applet
- stopAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
-
stop the tracking
- stopAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
controls stopping the analysis
- stopButton - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
-
- stopButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
-
- stopDataIn() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
stop collecting analog sensor values
- stopEventInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
-
stop the event interface
- stopRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
-
stops ramping the colors
- stopSignalGenerator() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
-
turn off the serial device
- stopStreaming(Pointer<UvcLibrary.uvc_device_handle>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- Straightness - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
-
- streamWithCallback(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>, Pointer<UvcLibrary.uvc_frame_callback_t>, long) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- strHeight - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
-
- STRING - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
-
- Stringer - Class in com.lobsterman.JavaGrinders
-
represents the central entity that reports results.
- Stringer() - Constructor for class com.lobsterman.JavaGrinders.Stringer
-
empty constructor
- StringVariable - Class in com.lobsterman.JavaGrinders
-
handles a variable of Strings.
- StringVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StringVariable
-
Standard constructor for the StringVariable class using a VariableOrganizer
- StrVariable - Class in com.lobsterman.JavaGrinders
-
handles a variable of Strings.
- StrVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StrVariable
-
Standard constructor for the root string Variable class using a VariableOrganizer
- studentTConfidenceInterval(int, double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
-
Computes absolute size of half of a student-t confidence interval
for given degrees of freedom, probability, and observed value.
- subSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
deselects rows that match a given object from the currently selected set of rows
- subtract(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
-
subtracts the constant from each value of the variable
- subtract(AngleVariable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
-
sets a double value for a given row of the Vector
- subtract(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
-
Subtracts argument vector from this vector.
- SUM - Static variable in class com.lobsterman.JavaGrinders.Applets.Cell
-
- SumX - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
- SumX - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
- SumX2 - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
- SumXY - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
-
- SumY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SumY - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
- SumY2 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SumY3 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SumY4 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
-
- SumZ - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
-
- surveyI2CBus() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
surveys the i2c bus for devices
- surveyI2CBus_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
surveys the i2c bus for devices
- surveyI2CBus_FTDI2xx(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
surveys the i2c bus for devices
- surveyI2CBus_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
surveys the i2c bus for devices
- surveyI2CBus_LinkM(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
-
surveys the i2c bus for devices
- surveyUSBTree() - Static method in class com.lobsterman.JavaGrinders.control.USBDeviceManager
-
survey USB devices
- surveyUVCTree() - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
-
- svd() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
-
Singular Value Decomposition
- swapRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
-
swaps the values in the two rows of all variables
- SymmetryTMinus - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- SymmetryTMinusProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- SymmetryTPlus - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-
- SymmetryTPlusProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
-