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JavaGrinders Library
v5.7
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A

absolute() - Method in class com.lobsterman.JavaGrinders.NumberVariable
set the value to its absolute value
actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
ActionListener interface (for menus)
actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Presenter
ActionListener interface (for menus)
actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
ActionListener interface (for menus)
actionPerformed(ActionEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
 
activateUsedChannels() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
activates the channels
activateUsedChannels() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
activate the channels
actualPs - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
add(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
adds the constant to each value of the variable
addAnalysisMenuItems() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
create and add an Analysis menus to the JFrame
addChangeListener(ChangeListener) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
addConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.Group
install a spatial constraint for the Group
addControlDeviceOperator(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
adds a controller for a device
addControlDeviceOperator(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
adds a controller for a device
addDeviceOperator(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.AnalogOutTriggerProc
adds a device operator
addDeviceOperator(DeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
adds a controller for a device
addDistanceToLatLong(SpatialVector, SpatialVector) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Returns the straight-line distance (in meters) between two locations defined as longitude/latitude (in degrees)
addEditMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
adds the edit menu items
addFileMenuItems() - Method in class com.lobsterman.JavaGrinders.Presenter
adds the file menu items
addFrame(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
 
addFrame(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.ImgProducer
 
addFrame(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
adds the frame
addHotShape(Shape) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
add shapes that define "hot" areas
addMenus() - Method in class com.lobsterman.JavaGrinders.AppEngine
sets up menus for the tracking application
addMenus() - Method in class com.lobsterman.JavaGrinders.Presenter
adds menus to the JFrame
addMenus() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
adds menus to the JFrame
addMenus() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets up menus for the tracking application
addMove(MoveVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
makes the animal move from the last recorded position
addPixel(int, Pixel) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
add a pixel to the Vector
addReferenceImageEdit(ImageEdit) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
adds an image edit to the list of reference edits for the RecordProc
addSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
adds rows that match a given object to the currently selected set of rows
addSensorDeviceOperator(SensorDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
adds a controller for a device
addTiledTrackingJobs(Rectangle, int, int, int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
configures the individual trackingjobs for a multicell arena
addTiledTrackingJobs(int, Rectangle, int, int, int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
configures the individual trackingjobs for a multicell arena
addTrackingJobSetting(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
adds a tracking job to the array
addTrackingJobSettings(TrackingJobSetting[]) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
adds a tracking job to the array
addValue(Object) - Method in class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
appends an Object to the end of the Variable
addValue(Object) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
appends an Object to the end of the Variable
addValue(Object) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
appends an Object to the end of the Variable
addValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
appends a number to the end of the Variable
addValue(double) - Method in class com.lobsterman.JavaGrinders.Variable
appends a number to the end of the Variable
addValue(float) - Method in class com.lobsterman.JavaGrinders.Variable
appends a number to the end of the Variable
addValue(Object) - Method in class com.lobsterman.JavaGrinders.Variable
appends an Object to the end of the Variable
adjustAnalysisRectDimensions(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
adjusts the max dimensions of the analysis rects if they extend outside the videoframe
AggressionAnalysisProc - Class in com.lobsterman.JavaGrinders.socialModel
characterizes an animal as a social entity.
AggressionAnalysisProc() - Constructor for class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
 
AnalogOutTriggerProc - Class in com.lobsterman.JavaGrinders.control
the main class controlling the analysis of video frames
AnalogOutTriggerProc(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.AnalogOutTriggerProc
Standard constructor for the Tracker class.
ANALYSIS - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
analysisButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
analysisMenu - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
AnalysisProc - Class in com.lobsterman.JavaGrinders.spatial
the main class controlling the invocation of analyses in the model
AnalysisProc() - Constructor for class com.lobsterman.JavaGrinders.spatial.AnalysisProc
 
analysisRunning - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
analysisStart - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
analyze() - Method in class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
Empty constructor for the Animal class
analyze(int, int) - Method in class com.lobsterman.JavaGrinders.spatial.AnalysisProc
performs the basic time management needed for AnalysisProcs, call this method from your subclass
analyze2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
lists the results from an analysis of differences in mean direction
analyze_nY() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
performs an analysis of multiple dependent variables
analyze_nY() - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
performs an analysis of multiple dependent variables
analyzeMultXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates analyses for multiple dependent on multiple independent variables
analyzeMultY() - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates analyses for multiple dependent on multiple independent variables
analyzeNGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
lists the results from an analysis of differences in mean direction
Analyzer - Class in com.lobsterman.JavaGrinders
Analyzer class - sets up a generic data analyzer, it does not do much aside from planting the general roots for analyzers
Analyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.Analyzer
Standard constructor using a VariableOrganizer
analyzeXY() - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates univariate analyses for dependent on independent variables
analyzeY() - Method in class com.lobsterman.JavaGrinders.Analyzer
describes one or multiple Y columns
analyzeY(Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
describes one or multiple Y columns
AngleConfInt95 - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
AngleConfInt99 - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
ANGLES - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
AngleSDRad - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
AngleVariable - Class in com.lobsterman.JavaGrinders.spatial
handles things that a general variable containing angles should do or know about.
AngleVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.AngleVariable
Standard constructor for the root number Variable class using a VariableOrganizer
AngleVarRad - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
ANOVAResults - Class in com.lobsterman.JavaGrinders.parametric
provides the interface for obtaining statistics for a 1-way ANOVA
ANOVAResults(int) - Constructor for class com.lobsterman.JavaGrinders.parametric.ANOVAResults
empty constructor
apertureTimes_MSLifecamStudio - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
app - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
append(Object[]) - Method in class com.lobsterman.JavaGrinders.Variable
appends the variable to the end of the variable
appendString(String) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
appends a given String to the pre-existing text for the cell
AppEngine - Class in com.lobsterman.JavaGrinders
the main class controlling a video tracking application
AppEngine(String) - Constructor for class com.lobsterman.JavaGrinders.AppEngine
Standard constructor for the Tracker class.
applyAlpha(BufferedImage, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
This method returns an BufferedImage after applying an alpha (transparency) to it
applyFilter(Mat) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
applies a filter to the Mat
applyMove(MoveVector) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
Returns the coordinates of this Capture after a Move has been applied to it
applyRandomMoveFromDistribution(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
generates a single move from a Distribution of Moves
applyVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the coordinates of the Location after a Move has been applied to it
applyVector(PolarVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the coordinates of the Location after a Move has been applied to it
Arduino - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
Arduino(String) - Constructor for class com.lobsterman.JavaGrinders.control.Arduino
standard constructor for the Arduino class
ArduinoInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
ArduinoInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.ArduinoInterface
standard constructor for the ArduinoInterface class
area2(GrahamPt2D, GrahamPt2D, GrahamPt2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns twice the signed area of the triangle a-b-c.
Arena - Class in com.lobsterman.JavaGrinders.spatial
implements an spatially explicit stage for the modelling
Arena(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Arena
Constructor with the low and high borders for x, y and z provided
Arena(double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Arena
Constructor with the low and high borders for x, y and z provided
ARGBColorToInt(int, int, int, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Assembles a RGB color int from individual color values
arrayLeftDivide(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Element-by-element left division, C = A.\B
arrayLeftDivideEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Element-by-element left division in place, A = A.\B
arrayRightDivide(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Element-by-element right division, C = A./B
arrayRightDivideEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Element-by-element right division in place, A = A./B
arrayTimes(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Element-by-element multiplication, C = A.*B
arrayTimesEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Element-by-element multiplication in place, A = A.*B
as2DdoubleArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the private array of data values for the ContingencyTable
as2DStringArray() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the private array of data values for the ContingencyTable
asAngleVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
return the variable as an AngleVariable with data representing angular degrees
asCircularGraph(AngleVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a circular graph for the provided angles
asCircularGraph() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
Creates a presenter and plots the movement vectors as a circular graph
asCircularGraph() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Creates a circular presenter
asCircularGraph(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Creates a circular presenter
asCircularGraph() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
Creates a presenter and plots the movement vectors as a circular graph
asColorHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a histogram for the provided table
asColorHistogram(ContingencyTable, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a histogram for the provided table
asConcatStrVariable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a new VariableOrganizer containing all variables which have been selected as independent variables (i.e., VariableDesignRole.X) and all selected rows
asDataTable() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a DataTable of doubles for variables in the variableorganizer which have been selected as dependent variables (i.e., VariableDesignRole.Y)
asDoubleArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a 2D array of doubles for the variables in the variableorganizer which have been selected as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
asHistogram() - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data as a frequency histogram
asHistogram(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data as a frequency histogram
asHistogram(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a circular graph for the provided angles
asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the private array of data values for the ContingencyTable
asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.Variable
returns a matrix for the variables in the variableorganizer which have been selected as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
asJAMAMatrix() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a matrix for the variables in the variableorganizer which have been selected as dependent variables (i.e., VariableDesignRole.Y) and which are ordinal or nominal
asNormalQuantilePlot() - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data
asPath() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the coordinates as a Path2D object
asPoint() - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
returns the info for the pixel as a Point
asProximity() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a proximity matrix for the variables in the variableorganizer which have been selected as dependent variables (i.e., VariableDesignRole.Y)
assertTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
checks for a crosstabulation (i.e., frequency) ContingencyTable.
asSGPolygon() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the path as a polygon
asSpatialMap(CaptureVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a spatial map graph for the provided captures
asSpatialMap(CaptureVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a spatial map graph for the provided captures
asSpatialMap() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Creates a presenter and plots the locations
asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Creates a presenter and plots the locations
asSpatialMap(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Creates a presenter and plots the locations
asSpatialMap(int, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Creates a presenter and plots the locations
asSpatialMap() - Method in class com.lobsterman.JavaGrinders.spatial.Group
Creates a presenter and plots the locations
asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.Group
Creates a presenter and plots the locations
asSpatialMap(GridSpace3D, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.Group
Creates a presenter and plots the locations
asSpatialMap() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
Creates a presenter and plots the locations
asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
Creates a presenter and plots the locations
asSpatialMap() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
Creates a presenter and plots the locations
asSpatialMap(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
Creates a presenter and plots the locations
asSpatialMap(GridSpace3D, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
Creates a presenter and plots the locations
asStringArray() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a 2D array of doubles for the variables in the variableorganizer which have been selected as dependent variables (i.e., VariableDesignRole.Y)
asTablePresenter() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
Creates a presenter from a VariableOrganizer for all the variables the organizer knows about
asTimeVariable() - Method in class com.lobsterman.JavaGrinders.NumberVariable
return the variable as an TimeVariable with data representing milliseconds
asVariableOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
returns the variable as a variable organizer filled with this variable
asVariableOrganizerX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a new VariableOrganizer containing all variables which have been selected as independent variables (i.e., VariableDesignRole.X) and all selected rows
asVariableOrganizerY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a new VariableOrganizer containing all variables which have been selected as dependent variables (i.e., VariableDesignRole.Y) and all selected rows
asXYPlot(NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data as a scatterplot with another numeric variable
asXYPlot(NumberVariable, boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data as a scatter plot with another numeric variable
asXYPlot(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data as a scatter plot with another numeric variable
asXYPlot(NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data as a scatterplot with another numeric variable
asXYPlot(NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
Creates a presenter and plots the data as a scatterplot with another numeric variable
asXYPlot(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a spatial map graph for the provided captures
asXYPlot(NumberVariable, NumberVariable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a spatial map graph for the provided captures
asXYPlot(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a spatial map graph for the provided captures
asXYPlot(NumberVariable, NumberVariable, GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a spatial map graph for the provided captures
asXYPlot(NumberVariable, NumberVariable, GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.Presenter
coordinates a JFrame with a spatial map graph for the provided captures
ATAN2_ORDER - Variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Compares two points by atan2() angle (between -pi and pi) with respect to this point.
attached - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
attacker - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
 
audioBeeper - Variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
AudioInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
AudioInterface() - Constructor for class com.lobsterman.JavaGrinders.control.AudioInterface
standard constructor for the AudioInterface class for a right and left channel
AudioInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.AudioInterface
standard constructor for the DeviceInterface class
autoColorTraces() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
reset the sensor traces
autoExtracted - Variable in class com.lobsterman.JavaGrinders.Variable
 
AUTOSETUP - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
available() - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
 
AVIProducer - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling a video generator
AVIProducer(File, int, int, long) - Constructor for class com.lobsterman.JavaGrinders.Tracker.AVIProducer
Constructor for the AVIProducer class.

B

BACK - Static variable in class com.lobsterman.JavaGrinders.spatial.View
 
backCol - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
backward - Static variable in class com.lobsterman.JavaGrinders.spatial.MoveVariable
 
barArray - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
barColor - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
barWid - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
barX - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
BasicCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.ANOVAResults
fill all the remaining terms once the sums are filled
BasicCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
fill terms once the sums are filled
basicCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
fill terms once the sums are filled
BasicData - Class in com.lobsterman.JavaGrinders
root class for all kinds of data objects
BasicData() - Constructor for class com.lobsterman.JavaGrinders.BasicData
 
beepToneFreq - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 
BehaviorCaptureData - Class in com.lobsterman.JavaGrinders.socialModel
characterizes an animal as a social entity.
BehaviorCaptureData(TargetCaptureData) - Constructor for class com.lobsterman.JavaGrinders.socialModel.BehaviorCaptureData
Constructor for the BehaviorCaptureData class using a TargetCaptureData record
betainv(double, double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the inverse beta, ALGORITHM AS 63 APPL.
betweenAngle(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
find the angle that is halfway between the two angles in a clockwise direction
bgColor - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
binomialCoeff(int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the binomial coefficient which reports the number of ways n items can be sampled from among a larger group without replacement and where the order is not important (i.e., dog = god)
binomialStandardError(double, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Computes standard error for observed values of a binomial random variable.
BlackToColor - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
blockingRead(byte[]) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
Blocks until buf.length bytes are read, an error occurs, or the default timeout is hit (if specified).
blockingRead(byte[], int) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
The same contract as SerialInputStream.blockingRead(byte[]) except overrides this stream's default timeout with the given one.
blockingRead(byte[], int, int) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
Blocks until length bytes are read, an error occurs, or the default timeout is hit (if specified).
blockingRead(byte[], int, int, int) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
The same contract as SerialInputStream.blockingRead(byte[], int, int) except overrides this stream's default timeout with the given one.
booleanUse - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
BooleanVariable - Class in com.lobsterman.JavaGrinders
handles a variable of Booleans
BooleanVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.BooleanVariable
Standard constructor for the BooleanVariable class using a VariableOrganizer
BOTTOM - Static variable in class com.lobsterman.JavaGrinders.spatial.View
 
briMaxValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
briMinValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
buildType - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
busAddress_end - Static variable in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
busAddress_start - Static variable in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
bytesToInt(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
converts a byte array into an integer
bytesToShort(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
converts a byte array into a short
byteToHexString(byte) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an unsigned byte as a hexadecimal string
byteToHexString(byte, boolean) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an unsigned byte as a hexadecimal string

C

calcContingencyResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
calculates the test of independence and returns ChiSquare and GValue
calcGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
calculates the test of independence and returns ChiSquare and GValue
cameraCounter - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
camSettings - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
Capture - Class in com.lobsterman.JavaGrinders.spatial
characterizes a single Capture with a capture location (as x, y, z coordinates) and a time stamp for the time of capture
Capture() - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
empty constructor for the Capture class
Capture(double, double, double, long) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
standard constructor for the 3D Capture class with coordinates and time provided
Capture(double, double, Date) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
standard constructor for the 3D Capture class with coordinates and time provided
Capture(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
constructor for the Capture class with coordinates provided
Capture(double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
constructor for the Capture class with coordinates provided
Capture(SpatialVector) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
constructor for the Capture class with coordinates provided as a SpatialVector
Capture(SpatialVector, Date) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
constructor for the Capture class with coordinates and time provided
Capture(SpatialVector, long) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
constructor for the Capture class with coordinates and time provided
Capture(double, double, double, Date) - Constructor for class com.lobsterman.JavaGrinders.spatial.Capture
standard constructor for the 3D Capture class with coordinates and time provided
CaptureVariable - Class in com.lobsterman.JavaGrinders.spatial
handles a variable of Captures (capture localities and time of capture).
CaptureVariable() - Constructor for class com.lobsterman.JavaGrinders.spatial.CaptureVariable
empty constructor for the CaptureVariable class using a VariableOrganizer
CaptureVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Standard constructor for the CaptureVariable class using a VariableOrganizer
ccw(GrahamPt2D, GrahamPt2D, GrahamPt2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Is a-b-c a counterclockwise turn?
Cell - Class in com.lobsterman.JavaGrinders.Applets
manages individual cells of a table, with dimensions and Capture, alignment and size of text, and colors.
Cell(int, int, Double) - Constructor for class com.lobsterman.JavaGrinders.Applets.Cell
standard constructor to initialize the cell with a set of values
Cell(FrequencyMatrixApplet, Color, Color, boolean, int, int, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Applets.Cell
standard constructor to initialize the cell with a set of values
Cell3D - Class in com.lobsterman.JavaGrinders.Applets
extends cells with a 3D-like appearance
Cell3D(FrequencyMatrixApplet, Color, Color, boolean, int, int, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Applets.Cell3D
standard constructor to initialize the cell with a set of values
CellAlignment - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
CellMatrix - Class in com.lobsterman.JavaGrinders.Applets
coordinates a set of visual cells with data contained in a ContingencyTable
CellMatrix(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.Applets.CellMatrix
standard constructor for the CellMatrix class
CellType - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
CENTER - Static variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
centered - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
centerLocation - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
centroid() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
channel - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
 
ChannelAccess_DIRECT - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
ChannelAccess_EVENTS - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
ChannelAccess_NONE - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
channels - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
 
channelsOn - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
CharVariable - Class in com.lobsterman.JavaGrinders
handles a variable of single characters.
CharVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.CharVariable
Standard constructor for the character variable class using a VariableOrganizer
checkAllUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
examines whether all rows contain valid and selected data
checkConnectedCoords() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
assures that coordinates are connected
checkDiagonal() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
does the matrix have a diagonal?
checkForColor() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
checks to make sure that color is available
checkForColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
checks whether column probabilities have been set
checkForG2(Graphics2D) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
confirms that the G2 graphics port is active and can be drawn into
checkForGray() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
checks to make sure that gray is available
checkForZeros() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
checks whether any column probabiities are zero
checkHost(String) - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
 
checkHosts(String) - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
 
checkInOrder() - Method in class com.lobsterman.JavaGrinders.NumberVariable
examine whether this variables is locked
checkInOrder(boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
examine whether this variables is locked
checkLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
assures that coordinates are latitude and longitude
checkLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
assures that coordinates are latitude and longitude
checkLocked() - Method in class com.lobsterman.JavaGrinders.Variable
examine whether this variables is locked
checkMatchingMatrixDimensions(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
examine whether this matrix has the same dimensions as the one provided?
checkMatchingRows(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Variable
examine whether this variables has the same number of rows as the provided ContingencyTable
checkMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
examines the matrix for invalid entries
checkMatrix() - Method in class com.lobsterman.JavaGrinders.DataTable
examines the matrix for invalid entries, all values may occur, so no flag is thrown
checkMatrixParamters(int, boolean) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
checks whether the matrix is square
checkMinimumN(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
checks whether enough data points are included
checkMinPoints(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
examines whether a minimum number points are available
checkMinUseRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
examines whether a minimum number rows is selected
checkMinVars(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
examines whether a minimum number of variables is selected
checkNumberIDs(int) - Method in class com.lobsterman.JavaGrinders.Variable
checks whether there is a given number of distinct IDs present in the currently selected set of rows
checkNumChannels(int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
checks to make sure that there are a minimum number of channels available
checkSameIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
checks whether two variables have identical sets of distinct IDs in the currently selected set of rows
checkSameNRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
examines whether the variable has the same number of rows as another variable
checkSameNSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
examines whether the same rows are selected as in another variable
checkSameSelectRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
examines whether the same rows are selected as in another variable
checkSameSelectRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
examines whether the same rows are selected as in another variable
checkSameUseRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
examines whether the same rows are selected and not missing as in another variable
checkSameUseRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
examines whether the same rows are selected and not missing as in another variable
checkSquare() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
check whether matrix is square
checkTimesInOrder() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
assures that coordinate times are in order
checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.Variable
checks whether a given row is within a valid range
checkValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
checks whether a given row is within a valid range
checkValidTargets(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
lists the TargetCaptureData
ChiSquare - Class in com.lobsterman.JavaGrinders.Utilities
 
ChiSquare() - Constructor for class com.lobsterman.JavaGrinders.Utilities.ChiSquare
 
ChiSqValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
ChiSqValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
ChiSqValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
chol() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Cholesky Decomposition
CholeskyDecomposition - Class in com.lobsterman.JavaGrinders.Jama
Cholesky Decomposition.
CholeskyDecomposition(Matrix) - Constructor for class com.lobsterman.JavaGrinders.Jama.CholeskyDecomposition
Cholesky algorithm for symmetric and positive definite matrix.
CIhigh - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
CIlow - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
circDispersion - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
CircularAnalyzer - Class in com.lobsterman.JavaGrinders.spatial
coordinates the analysis of directional data in an application.
CircularAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
Standard constructor using a VariableOrganizer
CircularDescriptives - Class in com.lobsterman.JavaGrinders.spatial
provides the interface for obtaining descriptive statistics from continuous variables.
CircularDescriptives() - Constructor for class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
empty constructor ensures that the only objects of this type are the elements enumerated above
CircularGraphPresenterPanel - Class in com.lobsterman.JavaGrinders.spatial
a presenter for circular graphs placed within a scrollpane within a frame.
CircularGraphPresenterPanel() - Constructor for class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
Standard constructor for the CircularGraphPresenterPanel class
clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.Analyzer
clears all assigned design roles for the variables
clearAllDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
clears all assigned design roles for the variables
clearCell() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
sets string content to empty and its number value to 0
clearCells() - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
clears the cells
clearColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
clears the external probabilities
clearContent() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
clears the fields and expected cells
clearFields() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
clears the various fields
clearPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
clears the external probabilities
clearSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
zero the sums for rows, columns, and total of the ContingencyTable
clearTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
zero the sums for all individual cells of the ContingencyTable
clearTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
clears the external probabilities
clearVariableDesignRoles() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
clears the design roles from all columns
CLIInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for a command line (SSH)
CLIInterface(Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.CLIInterface
 
clone() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.Descriptives
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Clone the Matrix object.
clone(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Returns a deep copy of the image
clone() - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.spatial.MapDimensions
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
clone the object
clone() - Method in class com.lobsterman.JavaGrinders.Variable
clone the object
cloneEmpty() - Method in class com.lobsterman.JavaGrinders.Variable
returns a clone of the Variable with selected rows only
cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.BooleanVariable
returns a BooleanVariable with only the selected rows
cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns a copy of the CaptureVariable containing only the selected rows
cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.StrVariable
returns a NumberVariable with only the selected rows
cloneSelectedRowsOnly() - Method in class com.lobsterman.JavaGrinders.Variable
returns a clone of the Variable with selected rows only
cloneVariableFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable as a clone of the variable
close() - Method in class com.lobsterman.JavaGrinders.control.Arduino
closes the device
close() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
closes the interface
close() - Method in class com.lobsterman.JavaGrinders.control.CLIInterface
closes the interfaces
close() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
closes the interfaces
close() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
closes the interface
close() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
closes the i2c hardware
close() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
closes the interface
close() - Method in class com.lobsterman.JavaGrinders.control.NetworkInterface
closes the interfaces
close() - Method in class com.lobsterman.JavaGrinders.control.OSCInterface
closes the interfaces
close() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
closes the interface
close(Exception) - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
close the signal generator
close() - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
 
close() - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
closes the producer
close_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
closes the FTDI
close_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
closes the LinkM
closeDeviceHandle(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
closeEventInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
close the event interface
closeEventInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
close the event interface
closeUVCDevice(Pointer<UvcLibrary.uvc_device>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
color - Variable in class com.lobsterman.JavaGrinders.Tracker.ImageEdit
 
Color_magenta - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
colorCodeSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
obtains the speed statistics for the variable using the currently selected set of rows and color codes the rows with it
colorDominanceCells() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
sets the color of the cells of the dominance matrix, dominant - green; subordinate - blue
ColorDown - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
COLORLABEL - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
colorModel - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
colorRamp(float[], int, int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
sets up the ramping of the color
ColorsDialog - Class in com.lobsterman.JavaGrinders.VisualStimulus
 
ColorsDialog(VisualStimulusGenerator) - Constructor for class com.lobsterman.JavaGrinders.VisualStimulus.ColorsDialog
 
ColorToBlack - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
colorToHex(Color) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Utility method to convert a Color into a KML color ref
ColorToWhite - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
ColorUp - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
ColorUtilities - Class in com.lobsterman.JavaGrinders.Utilities
 
ColorUtilities() - Constructor for class com.lobsterman.JavaGrinders.Utilities.ColorUtilities
 
cols - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
 
colToString(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the formatted object as a string
com.lobsterman.JavaGrinders - package com.lobsterman.JavaGrinders
 
com.lobsterman.JavaGrinders.Applets - package com.lobsterman.JavaGrinders.Applets
 
com.lobsterman.JavaGrinders.control - package com.lobsterman.JavaGrinders.control
 
com.lobsterman.JavaGrinders.Instruments - package com.lobsterman.JavaGrinders.Instruments
 
com.lobsterman.JavaGrinders.Jama - package com.lobsterman.JavaGrinders.Jama
 
com.lobsterman.JavaGrinders.parametric - package com.lobsterman.JavaGrinders.parametric
 
com.lobsterman.JavaGrinders.RHUtilities - package com.lobsterman.JavaGrinders.RHUtilities
 
com.lobsterman.JavaGrinders.socialModel - package com.lobsterman.JavaGrinders.socialModel
 
com.lobsterman.JavaGrinders.spatial - package com.lobsterman.JavaGrinders.spatial
 
com.lobsterman.JavaGrinders.Tracker - package com.lobsterman.JavaGrinders.Tracker
 
com.lobsterman.JavaGrinders.Utilities - package com.lobsterman.JavaGrinders.Utilities
 
com.lobsterman.JavaGrinders.VisualStimulus - package com.lobsterman.JavaGrinders.VisualStimulus
 
combineSelectedWithSavedSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
combines the current set of selected rows with that set that has been saved earlier using saveSelectedRows()
commentPanel1 - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
compare(SpatialVector, SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
 
compare(TargetCaptureData, TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
defines sortorder relative to another object
compareTo(GrahamPt2D) - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Compares this point to that point by y-coordinate, breaking ties by x-coordinate.
completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
fill all the remaining terms once the sums are filled
completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.MultRegressionResults
fill all the remaining terms once the sums are filled
completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
fill all the remaining terms once the sums are filled
completeCalculations() - Method in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
fill all the remaining terms once the sums are filled
completeCalculations() - Method in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
fill all the remaining terms once the sums are filled
completeInterface() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
complete the interface for an Arduino
completeInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
complete the interface to a Phidget
completeInterface() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
complete the interface for the FTDI
completeInterface() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
complete the interface to a Phidget
completeInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
complete the interface to a Phidget
completeSummaryFit() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
fill all the remaining terms for the summary of fit
completeTableTerms() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
fill all the remaining table terms
comps - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
comps_mag - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
cond() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Matrix condition (2 norm)
cond() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Two norm condition number
configure(int, int, long) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
configure the AVIProducer class.
configureVideoSource() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
configure the source of video frames
confirmArduinoHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
confirms thqt the Interface controls an Arduino
confirmBufferSize(byte[], int, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns whether the integer is an even number
confirmChannelRange(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
tests for the controller being in the available range of device IDs
confirmElements(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
confirms the validity of the setup for rendering
confirmInputCapable() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
confirms that the interface contains output channels
confirmInterface() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
confirms that the controller has an interface
confirmInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
confirms that the controller has an interface
confirmMinNChannels(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
tests for a minimum number of available channel IDs
confirmMinXVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
checks whether there are sufficient dependent variables available
confirmMinYVariables(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
checks whether there are sufficient dependent variables available
confirmOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
confirms that a VariableOrganizer is available
confirmOutputCapable() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
confirms that the interface contains output channels
confirmPhidgetHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
confirms thqt the Interface controls a Phidget
confirmPositionInValidRange(double) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
confirms that a setting is within the valid range
confirmReferenceAvailable() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
assures that a reference frame is available
confirmValidBuffer(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
confirms that the byte buffer is not empty
Constraint - Class in com.lobsterman.JavaGrinders.spatial
implements the spatially explicit stage for the modelling
Constraint(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
constructor with the Dimensions provided
Constraint() - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
empty constructor
Constraint(double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
constructor with the Dimensions provided
Constraint(GridSpace3D) - Constructor for class com.lobsterman.JavaGrinders.spatial.Constraint
constructor with the Dimensions provided
constructWithCopy(double[][]) - Static method in class com.lobsterman.JavaGrinders.Jama.Matrix
Construct a matrix from a copy of a 2-D array.
contains(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns whether the GridSpace3D contains a SpatialVector
contains(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns whether the GridSpace3D contains another GridSpace3D
contains(Point2D.Double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns whether the GridSpace3D contains a Point2D
contains(Rectangle2D, Rectangle2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Checks, whether the given rectangle1 fully contains rectangle 2 (even if rectangle 2 has a height or width of zero!).
containsPlus(Point2D) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
checks whether the Polygon contain the point p0? if p is on boundary then 0 or 1 is returned, and p is in exactly one point of every partition of plane.
containsZero() - Method in class com.lobsterman.JavaGrinders.Grid
returns whether the space contains the zero value
ContingencyAnalyzer - Class in com.lobsterman.JavaGrinders
coordinates the analysis of contingency tables in an application.
ContingencyAnalyzer(VariableOrganizer, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
Standard constructor using a VariableOrganizer
ContingencyAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
Standard constructor using a VariableOrganizer, assuming that the diagonal is present
ContingencyAnalyzer(ContingencyTable) - Constructor for class com.lobsterman.JavaGrinders.ContingencyAnalyzer
Standard constructor, providing it with a contingency table directly
ContingencyTable - Class in com.lobsterman.JavaGrinders
contains a crosstabulation frequency table and performs a variety of statistics on it, including G-test, Chi-square, mantel, Kendall's Tau, etc.
ContingencyTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
standard constructor for the ContingencyTable class
ContingencyTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
standard constructor for the ContingencyTable class
ContingencyTable(int, int, String) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
standard constructor for the ContingencyTable class
ContingencyTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
standard constructor for the ContingencyTable class
ContingencyTable(double[]) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
standard constructor for the ContingencyTable class which installs values into column 1
ContingencyTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
standard constructor for the ContingencyTable class
ContingencyTable(double[][], boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
standard constructor for the ContingencyTable class
ContingencyTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.ContingencyTable
constructor for the ContingencyTable class with a JAMA Matrix provided
CONTINUOUS - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
contrChannelsInUse - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
ContResults - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
controlAllDevices(Capture) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
controls all devices
controlAnalyze_1Y1X(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates an analysis of dependent onto independent variable
controlAnalyze_1YnX(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates an analysis of one dependent onto multiple independent variable.
controlAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates an analysis of multiple dependent variable.
controlAnalyze_nY1X(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates an analysis of multiple dependent onto one independent variable.
controlAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
coordinates an analysis of multiple dependent onto multiple independent variable.
ControlDesignType - Class in com.lobsterman.JavaGrinders.control
ControlDesignType class - specifies the datatype that best characterizes the variable
ControlDesignType() - Constructor for class com.lobsterman.JavaGrinders.control.ControlDesignType
empty private constructor ensures that the variables are enumerated
controlDevice(Capture) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
control the device depending on object location
controlDeviceFromSchedule(int, TimeVariable, boolean) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
controls a device from a schedule
ControlDeviceOperator - Class in com.lobsterman.JavaGrinders.control
the main class controlling something
ControlDeviceOperator() - Constructor for class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
standard constructor for the DeviceController class
ControlDeviceOperator(int) - Constructor for class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
standard constructor for the DeviceController class
controlPanelHeight - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
controls - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
ContTableResults - Class in com.lobsterman.JavaGrinders
holds a set of results obtained for an analysis of a contingency table
ContTableResults() - Constructor for class com.lobsterman.JavaGrinders.ContTableResults
 
copy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Make a deep copy of a matrix
copy(PolarVector) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
copy other vector into this one
copy(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
copy other vector into this one
copyCircularDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns descriptive Circular Statistic for the variable using the currently selected set of rows
copyDataArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
copy the data array
copyDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
returns the descriptives for the variable
copyMatrixSumsToCells() - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
recalculates the sums around the data matrix
copyMatrixToCells() - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
fills the cells with the values from the data matrix
copyNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns descriptive Statistic for the variable using the currently selected set of rows
copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for all rows based on select state of another variable
copySelectStateFrom(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the select flag for all rows based on select state of another variable
copySpatialDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the descriptive statistics for the variable and returns the results
copyStringArray(int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
copy the data array
copyWithAlpha(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Returns a deep copy of the image
CorrelationResults - Class in com.lobsterman.JavaGrinders.parametric
provides the interface for obtaining descriptive statistics from continuous variables.
CorrelationResults() - Constructor for class com.lobsterman.JavaGrinders.parametric.CorrelationResults
empty constructor
cos2Sum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
cosMean - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
cosSum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
countBlackPixels(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
counts how many pixels are black.
countNEq(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
find the number of angles that are between or equal the two angles in a clockwise direction
countNLe(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
find the number of angles that are between or equal the two angles in a clockwise direction
createContingencyTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
checks for a crosstabulation (i.e., frequency) ContingencyTable.
createCrossTabulationtionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
checks for a crosstabulation (i.e., frequency) ContingencyTable.
createDiagonalCross(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Creates a diagonal cross shape.
createDiamond(float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Creates a diamond shape.
createDownTriangle(float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Creates a triangle shape that points downwards.
createLineRegion(Line2D, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Creates a region surrounding a line segment by 'widening' the line segment.
createModalProgressMonitor(Component, int, boolean, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressUtils
 
createRegularCross(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Creates a diagonal cross shape.
createRootPane() - Method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
 
createTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
checks for a crosstabulation (i.e., frequency) ContingencyTable.
createTransitionTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
checks for a crosstabulation (i.e., frequency) ContingencyTable.
createTranslatedShape(Shape, double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Creates and returns a translated shape.
createUpTriangle(float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Creates a triangle shape that points upwards.
cross(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Calculates the cross product of this vector and the one passed to it.
currentTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
currentValue - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
 
currSampleTime - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
CustomCameraDialog - Class in com.lobsterman.JavaGrinders.Tracker
 
CustomCameraDialog(JFrame, Pointer<UvcLibrary.uvc_device_handle>) - Constructor for class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
 
customColorFromData(NumberVariable, Color) - Method in class com.lobsterman.JavaGrinders.Variable
sets a custom colors for all selected rows
customColorSelectedRows(Color) - Method in class com.lobsterman.JavaGrinders.Variable
sets a custom colors for all selected rows
customColorSelectedRows(Color, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sets a custom colors for all selected rows
customFillColor10_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor10_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor10_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor1_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor1_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor1_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor2_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor2_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor2_mag - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor2_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor3_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor3_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor3_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor4_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor4_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor4_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor5_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor5_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor5_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor6_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor6_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor6_mag - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor6_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor7_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor7_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor7_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor8_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor8_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor8_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor9_blue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor9_green - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
customFillColor9_red - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
CV - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
cyclesPerSec - Variable in class com.lobsterman.JavaGrinders.control.SineWaveGenerator
 

D

DARKOBJECT - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
dashedStroke - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
DataChannelDescriptor - Class in com.lobsterman.JavaGrinders.control
the main class for the settings of the data channel
DataChannelDescriptor(int) - Constructor for class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
standard constructor for the DeviceOperator class
DataChannelDescriptor(int, int, int) - Constructor for class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
standard constructor for the DeviceOperator class
DataFileParser - Class in com.lobsterman.JavaGrinders
interfaces with disk-based files.
DataFileParser(String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
standard constructor for the DataFileParser class
DataFileParser(String, String) - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
standard constructor for the DataFileParser class
DataFileParser() - Constructor for class com.lobsterman.JavaGrinders.DataFileParser
constructor for the DataFileParser class if no text file name is provided
DataTable - Class in com.lobsterman.JavaGrinders
Unlike a contingency table, a data table may contain negative values (e.g.
DataTable(int, int, boolean, String) - Constructor for class com.lobsterman.JavaGrinders.DataTable
standard constructor for the DataTable class
DataTable(int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
standard constructor for the DataTable class
DataTable(int, int) - Constructor for class com.lobsterman.JavaGrinders.DataTable
standard constructor for the DataTable class
DataTable(Matrix, boolean) - Constructor for class com.lobsterman.JavaGrinders.DataTable
constructor for the DataTable class with a JAMA Matrix provided
DataTable(double[][]) - Constructor for class com.lobsterman.JavaGrinders.DataTable
standard constructor for the ContingencyTable class
DataTablePresenter - Class in com.lobsterman.JavaGrinders
given a DataParser object, its content is formatted automatically and presented as a JTable object placed within a scrollpane within a frame
DataTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.DataTablePresenter
Standard constructor for the DataTablePresenter class using a VariableOrganizer
DataValue - Class in com.lobsterman.JavaGrinders.control
the main class that represents an data value from an analog sensing channel
DataValue(long, int, float) - Constructor for class com.lobsterman.JavaGrinders.control.DataValue
standard constructor for the DataValue class
DATETIME - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
 
datVal - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
defPixelFormat - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
defVideoHeight - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
 
defVideoRect - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
 
defVideoWidth - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
 
deleteAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
delete all rows from the Variable
deleteAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
deletes all rows from all the variables that are registered with the VariableOrganizer
deleteCol(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
delete a column from the VariableOrganizer
deleteCols() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
delete all columns from the Organizer
deleteColsNonX() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
delete all non-X-selected columns from the Organizer
deleteColsNonY() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
delete all non-Y-selected columns from the Organizer
deleteDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
deletes duplicate rows
deleteMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
deletes all missing rows
deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
delete all non-selected rows
deleteNonSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
delete all non-selected rows from the Organizer
deleteRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
delete a row from the Variable
deleteRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
deletes a row from all the variables that are registered with the VariableOrganizer
deleteRowNoCheck(int) - Method in class com.lobsterman.JavaGrinders.Variable
delete a row from the Variable without coordinating a VartiableOrganizer
deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
deletes all selected rows
deleteSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
deletes all selected rows
deleteTrackingJobSetting(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
returns a specific tracking jobs
densForward - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
 
DENSITY_AREA - Static variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
DENSITY_NPOINTS - Static variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
DENSITY_PERIMETER - Static variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
densityMethod - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
 
Descriptives - Class in com.lobsterman.JavaGrinders
provides the interface for obtaining descriptive statistics from continuous variables.
Descriptives() - Constructor for class com.lobsterman.JavaGrinders.Descriptives
empty private constructor ensures that the only objects of this type are the elements enumerated above
deselectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for all rows to false
deselectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the select flag for all rows to false
deselectRowsWithMissing() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
deselects all rows if a value is missing in any of the included variables
det() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
Determinant
det() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Matrix determinant
DeviceInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
DeviceInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
standard constructor for the DeviceInterface class
DeviceInterface(int, Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
standard constructor for the DeviceInterface class
DeviceInterface(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
standard constructor for the DeviceInterface class
DeviceInterface(int, float, Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceInterface
standard constructor for the DeviceInterface class
DeviceOperator - Class in com.lobsterman.JavaGrinders.control
the main class controling something
DeviceOperator(int) - Constructor for class com.lobsterman.JavaGrinders.control.DeviceOperator
standard constructor for the DeviceOperator class
deviceSocket - Variable in class com.lobsterman.JavaGrinders.control.NetworkInterface
 
DeviceType_IN - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
DeviceType_INOUT - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
DeviceType_NONE - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
DeviceType_OUT - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
df - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
df - Variable in class com.lobsterman.JavaGrinders.parametric.ParametricTerm
 
df0 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
df1 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
df2 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
df3 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
df4 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
df5 - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
dfE - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
dfM - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
dfMComplete - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
dfMP - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
dfT - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
diagonal - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
diagonal - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
diagonal - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
dialog - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
disableAudioFeedback() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
 
DiscriminantAnalysis - Class in com.lobsterman.JavaGrinders.parametric
 
DiscriminantAnalysis(double[][], double[]) - Constructor for class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Calculates a linear discriminant analysis (LDA) with all necessary
displayFrameTime(String) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
displayHistogram(byte[]) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
displayReference() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
display the reference frame in the tracking canvas
displays - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
displayTransparentRect(Rectangle, float) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
displayVideo - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
distance(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
the absolute value after subtracting the constant from each value of the variable
DISTANCE_TO_ORDER - Variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Compares two points by distance to this point.
distanceMax - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distanceMean - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distanceMin - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distanceMove - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distanceNet - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distanceSD - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distanceSquaredTo(GrahamPt2D) - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns the square of the Euclidean distance between this point and that point.
distanceTo(GrahamPt2D) - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns the Euclidean distance between this point and that point.
distanceTotal - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distanceVar - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
distThreshold - Variable in class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
 
divide(double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Divide a matrix by a scalar, C = s*A
divide(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
divides each value of the variable by the constant
divideEquals(double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Divide a matrix by a scalar, C = s*A
doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the descriptive statistics results for a variables
doAnalyze_1Y(Variable, Double) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from a comparison with an a-priori mean
doAnalyze_1Y(Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
lists the results from a transition analysis of the variables.
doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one dependent variable on one independent variable (with 2 states).
doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
performs a Contingency analysis (Y variable with 2 groups)
doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
performs a parametric analysis with one Y and one X variable (with 2 groups)
doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
lists the results from an analysis of one independent (with 2 states) and one dependent variable.
doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results from an analysis of one indepent (with 2 states) and one dependent variable.
doAnalyze_1Y1X2Groups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
lists the results from an analysis of one dependent variable on one indepent variable (with 2 states).
doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one dependent variable on one continuous indepent variable.
doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
lists the results from an analysis of one independent (continuous) and one dependent variable.
doAnalyze_1Y1Xcontinuous(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results from an analysis of one independent (continuous) and one dependent variable.
doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one dependent variable on one independent variable (with more than 2 states).
doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
performs a Contingency analysis (Y variable with n groups)
doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
performs a parametric analysis with one Y and one X variable (with multiple groups)
doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
lists the results from an analysis of one independent (with multiple states) and one dependent variable.
doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results from an analysis of one independent (with multiple states) and one dependent variable.
doAnalyze_1Y1XnGroups(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
lists the results from an analysis of one dependent variable on one independent variable (with more than 2 states).
doAnalyze_1YnXcontinuous(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one dependent variable on multiple independent variable.
doAnalyze_1YnXcontinuous(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
lists the results from an analysis of one dependent variable on multiple indepent variable.
doAnalyze_1YnXnGroups(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one dependent variable on multiple indepent variable.
doAnalyze_1YnXnGroups(Variable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results from an analysis of one dependent variable on multiple indepent variable.
doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
performs an analysis of multiple dependent variable.
doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
controls an analysis of multiple dependent variables
doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
performs an analysis of multiple dependent variable.
doAnalyze_nY(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
performs an analysis of multiple dependent variable.
doAnalyze_nY1Xcontinuous(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one dependent continuous variable on multiple indepent variable.
doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one ordinal or nominal dependent variable on multiple indepent variable.
doAnalyze_nY1XnGroups(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
lists the results from an analysis of one dependent variable on multiple indepent variable.
doAnalyze_nYnX(VariableOrganizer, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the results from an analysis of one dependent variable on multiple indepent variable.
doAngle180DegRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Takes an angle in Degrees (°) and ranges it to between -180 and +180
doAngle2PiRadRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Takes an angle in Radians and ranges it to between 0 and Pi°
doAngle360DegRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Takes an angle in Degrees (°) and ranges it to between 0 and 360
doAnglePiRadRange(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Takes an angle in Radians and ranges it to between -Pi and +Pi
doANOVA(NumberVariable, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results for an Analysis of Variance (ANOVA)
doAutoSetup() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the task state of the RecordProc to perform a search for an object of interest
doBeep(int) - Method in class com.lobsterman.JavaGrinders.control.AudioInterface
starts the device on one channel.
doChiSquare() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
coordinates a Chi-square test on the observed values
doClear() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a clear event
doClose() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
handles a close event
doClose() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a close Document event
doColorBars - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
doCompare_1Y(double, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
lists the results from an analysis of one independent (with 2 states) and one dependent variable.
doCompare_1Y(double, NumberVariable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results from an analysis of one indepent (with 2 states) and one dependent variable.
doCopy() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a copy event
doCorrelationAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over th intercept
doCustomProcessing(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
replace this with whatever custom processing you like to do on the TargetCaptureDataList
doCut() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a cut event
doDescribeX() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
handles the describe all X variables event
doDescribeY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
handles the describe all Y variables event
doDiscriminant() - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
lists the results for a Discriminant Analysis
doExperiment() - Method in class com.lobsterman.JavaGrinders.control.Experiment
runs the experiment
doFactorialANOVA(NumberVariable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results for an Analysis of Variance (ANOVA)
doFadeTrail() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
report the current time to wherever needed
doFitXY() - Method in class com.lobsterman.JavaGrinders.StatTablePresenter
handles the fit Y by X variables event
doFractalAnalysis() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the fractal dimension for the variable using the currently selected set of rows
doFTukey() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
coordinates a calculation of Freeman-Tukey deviates on the observed values
doFTukeyOnPropFitting() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
coordinates a calculation of Freeman-Tukey deviates on the observed values after proportional fitting of the observed values
doFTukeyOnTotals() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
coordinates a calculation of Freeman-Tukey deviates on the observed values after upper and lower matrix have been summed
doGraphPeakIntervals(NumberVariable, NumberVariable, int, int, float, float, double, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
graphs the peak intervals
doGraphPeakSizes(NumberVariable, NumberVariable, int, int, float, float, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
graphs the peak sizes
doGraphValues(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
graphs the trace values
doGraphValues(NumberVariable, NumberVariable, Grid) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
graphs the trace values
doGraphValues(NumberVariable, NumberVariable, Grid, Grid) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
graphs the trace values
doGValue() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
coordinates a G-test on the observed values
doHierarchyAnalysis() - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
reports individual ordinal ranks and a hierachy analysis for a dominance matrix
doHotellingF(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
controls the Analysis of mean angles
doLabelXOrigin - Variable in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
doLabelYOrigin - Variable in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
doLinearity() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
calculate and report the estimates of linearity
DominanceTable - Class in com.lobsterman.JavaGrinders
contains a table of dominance relationships and performs a variety of statistics on it, including test of linearity, ordinal ranks, etc.
DominanceTable(int) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
standard constructor for the DominanceTable class
DominanceTable(int, double[][]) - Constructor for class com.lobsterman.JavaGrinders.DominanceTable
standard constructor for the DominanceTable class
doMultLinRegression(NumberVariable, VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
lists the results for a Multiple Regression Analysis
doNew() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a new Document event
doOpen() - Method in class com.lobsterman.JavaGrinders.Presenter
handles an open Document event
doOrientation() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
performs an analysis of principal axis orientations
doOutlineBars - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
doPaste() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a paste event
doPCA(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
performs a principal components analysis for all dependent variables.
doPCA(VariableOrganizer, boolean) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
performs a principal components analysis for all dependent variables.
doPeakAnalysis(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
lists the results from an analysis of one independent (continuous) and one dependent variable.
doPeakAnalysis(NumberVariable, NumberVariable, int, int, float, float, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
lists the results from an analysis of one independent (continuous) and one dependent variable.
doPrepare() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the task state of the RecordProc to prepare for processing
doPruneClosePeaks(ArrayList<Integer>, NumberVariable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
removes the smaller peak if two are too close
doRanks() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
calculate and report ranks
doReference() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the task state of the RecordProc to reference acquisition
doRegression(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results for a Regression Analysis
doRegressionAnalysis(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
doRegressionAnalysis(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
doSave() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
handles a save event
doSave() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a save Document event
doSaveAs() - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
handles a save as event
doSaveAs() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a save as ...
doSelectAll() - Method in class com.lobsterman.JavaGrinders.Presenter
handles a select all event
doShowSetup() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the task state of the RecordProc to perform a search for an object of interest
dot(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Calculates the dot product of this vector and another
doTauKr() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
coordinates a calculation of Kendall Tau value for a correlation between an actor and a receiver matrix
dotTest(double, NumberVariable) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the results for a t-test
doUndo() - Method in class com.lobsterman.JavaGrinders.Presenter
handles an undo event
doWarnings - Variable in class com.lobsterman.JavaGrinders.Grid
 
doWatsonU2(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
controls the Analysis of mean angles
doWatsonWilliamsF(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
controls the Analysis of mean angles
doWheelerW(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularAnalyzer
controls the Analysis of mean angles
DoWilliamsCorr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
calculates the William's correction
drawAnalysisRects() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
draws the outline of the areas of interest into the plotting canvas
drawBGImage(Graphics2D, Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
adds a background image to the panel
drawCell(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
draws the cell
drawCell(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.Cell3D
draws the cell
drawColor - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
drawFrame - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
drawFrame(Graphics2D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
draw a frame around the PreenterPanel's active drawing area
drawFront - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
drawFrontToTracking(TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
draws the object onto the tracking canvas
drawHotZoneRects() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
draws the outline of the areas of interest into the plotting canvas
drawLabel(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
draws the label for the cell
drawObject - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
drawObjectToTracking(TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
draws the object onto the tracking canvas
drawPolys(SGPolygon[], Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
drawShape(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
drawShapeWithColor(Shape, Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
drawSurround - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
drawSurroundToTracking(TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
draws the object onto the tracking canvas
drawTShape(Graphics) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
draws the tRect if needed
dX - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialVector
 
dY - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialVector
 
dZ - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialVector
 

E

echoConsole() - Method in class com.lobsterman.JavaGrinders.control.CLIInterface
 
echoConsole() - Method in class com.lobsterman.JavaGrinders.control.NetworkInterface
 
editable - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
editMenu - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
editMenu - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
eig() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Eigenvalue Decomposition
EigenvalueDecomposition - Class in com.lobsterman.JavaGrinders.Jama
Eigenvalues and eigenvectors of a real matrix.
EigenvalueDecomposition(Matrix) - Constructor for class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
Check for symmetry, then construct the eigenvalue decomposition
enableAudioFeedback(int) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
enables audio feedback via a beep when the condition triggers
end - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
 
end - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
end - Variable in class com.lobsterman.JavaGrinders.spatial.TimeDescriptives
 
enhancedColor - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
enhancedFillColor - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
equal(Line2D, Line2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Compares two lines are returns true if they are equal or both null.
equal(Ellipse2D, Ellipse2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Compares two ellipses and returns true if they are equal or both null.
equal(Arc2D, Arc2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Compares two arcs and returns true if they are equal or both null.
equal(Polygon, Polygon) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Tests two polygons for equality.
equal(GeneralPath, GeneralPath) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Tests two polygons for equality.
equals(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
Tests whether or not two Captures contain the same values
equals(MoveVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Tests whether or not two vectors are identical in respect to x,y,z coordinates.
equals(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Tests whether or not two vectors are identical in respect to x,y,z coordinates.
equals(Object) - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Does this point equal y?
estimateD(double, double, double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the fractal dimension of the moves
EUCLIDIAN - Static variable in class com.lobsterman.JavaGrinders.DataTable
 
execute(float) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
executes the basic testing for the TriggerProc
execute() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
performs the basic time management needed for RecordProcs, call this method from your subclass to see whether your function should record or not
executeTrackingJob(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
execute the tracking job
Experiment - Class in com.lobsterman.JavaGrinders.control
provides the interface for obtaining descriptive statistics from continuous variables.
Experiment(boolean) - Constructor for class com.lobsterman.JavaGrinders.control.Experiment
basic constructor
EXTERNALREFERENCEIN - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
EXTERNALREFERENCEOUT - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 

F

F - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
 
factorial - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
factorial(int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Returns the factorial of a number
fadeG2Comp() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
draws the outline of the areas of interest into the plotting canvas
fgColor - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
FileData - Variable in class com.lobsterman.JavaGrinders.DataFileParser
 
fileMenu - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
fileMenu - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
fileWrite(String) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
main function to report a string to the file
fileWriteln(String) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
report a string and carriage return to the file
fileWriteln() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
report a carriage return to the file
fill(Polygon) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the variable with locations from x and y coordinates that mark the corners of a polygon.
fill(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Fills the variable with captures, x and y variable from the same row are assumed to belong together
fill(NumberVariable, NumberVariable, NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Fills the variable with captures, x, y, z coordinates from the same row are assumed to belong together
fill(NumberVariable, NumberVariable, NumberVariable, TimeVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Fills the variable with captures, x, y, z coordinates from the same row are assumed to belong together
fill(NumberVariable, NumberVariable, TimeVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
Fills the variable with captures, x and y variable from the same row are assumed to belong together
fill(PolarVector[]) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the variable with captures
fill(SpatialVector[]) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the variable with captures
fill(NumberVariable, NumberVariable, NumberVariable, IntegerVariable) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
fills the variable with moves starting from 0,0,0.
fill(int, Object) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with the given value in every row.
fill(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with a constant
fill(Object[], boolean) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with the given value in every row.
fill(Object[]) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with the given value in every row.
fill(double[]) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with individual datavalues from a double array
fill(int[]) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with individual datavalues from a double array
fillAttack(long, int, int) - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
fill the fields for the attack
fillBars() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
fillBufferedByteImage(Mat, BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHOpenCVUtils
converts an image from OpenCV to java space
fillBufferedIntImage(Mat, BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHOpenCVUtils
converts an image from OpenCV to java space
fillColor - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
fillColorBytesFromMat() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
fills the color bytes for the Mat
fillCompleteTerms(VariableOrganizer, ANOVAResults) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the n-way interaction terms for the ANOVA
fillCP(NumberVariable, SquaresCrossproductResults) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the sums of squares and crossproducts for the variable
fillDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the descriptive circular statistics for the angle variable with a comparison to an external mean
fillDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the descriptive circular statistics for the angle variable with a comparison to an external mean
fillDescriptives(Double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the descriptive circular statistics for the angle variable with a comparison to an external mean
fillDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the descriptive statistics for the variable - locations
fillDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
fills the descriptive circular statistics for the angle variable with a comparison to an external mean
fillDescriptives(Double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
fills the descriptive statistics for the variable, at the root level only a check for valid data points is performed
fillDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
fills the descriptive statistics for the variable - locations
fillDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
fills the descriptive statistics for the variable - locations
fillDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
fills the descriptive statistics for the variable, at the root level only a check for valid data points is performed
fillDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.Variable
fills the descriptive statistics for the variable, at the root level only a check for valid data points is performed
fillFactorialTermNames(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
fills the n-way interaction terms for the ANOVA
fillFinalTerm() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
fillGrayBytesFromMat() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
fills the grayBytes for the Mat
fillGrid() - Method in class com.lobsterman.JavaGrinders.Grid
fills grid with values
fillInterestingAngles() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills a variable with angles that should be examined
fillInterestingMedianAngles() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills a variable with angles that should be examined as median
fillMoreDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills additional descriptive circular statistics for the angle variable
fillMoreDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
fills additional descriptive statistics for the move variable
fillMoreDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
fills additional descriptive statistics for the variable
fillPerms() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
fills the array with all possible (or desired) permutations
fillPolys(SGPolygon[], Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
fillRetreat(long, int, int) - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
fill the fields for the retreat
fillShape(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
fillShapeWithColor(Shape, Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
fillSS(SquaresCrossproductResults) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the sums of squares and crossproducts for the variable
fillSSCP(SquaresCrossproductResults) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the sums of squares and cross-products for the variable
fillSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
calculate sums for rows, columns and total of the ContingencyTable
fillWithFormula(String) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the variable with individual data values created through a formula
fillWithGaussRandom(double, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the variable with random values from a Gaussian Distribution
fillWithGaussRandom(Capture, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the variable with random values from a uniform distribution between 0 and 1
fillWithParser(DataFileParser, int) - Method in class com.lobsterman.JavaGrinders.BooleanVariable
fills the variable with individual datavalues read from a textfile using a DataFileParser object
fillWithParser(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.CharVariable
fills the variable with individual datavalues read from a textfile using a DataFileParser object
fillWithParser(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the variable with individual datavalues read from a textfile using a DataFileParser object
fillWithParser(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the variable with individual data values read from a textfile using a DataFileParser object
fillWithParser(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
fills the variable with individual data values read from a text file using a DataFileParser object
fillWithParser(DataFileParser, int, boolean, String) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
fills the variable with individual data values read from a text file using a DataFileParser object
fillWithParser(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.StringVariable
fills the variable with individual datavalues read from a textfile using a DataFileParser object
fillWithParser(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.StrVariable
fills the variable with individual datavalues read from a textfile using a DataFileParser object
fillWithParser(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with individual datavalues read from a textfile using a DataFileParser object.
fillWithParser(DataFileParser, int) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable with individual datavalues read from a textfile using a DataFileParser object.
fillWithParserRadians(DataFileParser, int, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the variable with individual data values read from a textfile using a DataFileParser object
fillWithRandomFromDistribution(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the variable with random values from a Gaussian Distribution
fillWithRandomFromDistribution(NumberVariable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the variable with random values from a Gaussian Distribution
fillWithRandomFromDistribution(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the variable with random values from a Distribution of Moves
fillWithRowNum() - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the variable with individual data values created through a formula
fillWithUniformRandom() - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the variable with random values from a uniform distribution between 0 and 1
fillWithUniformRandom() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the variable with random values from a uniform distribution between 0 and 360
fillWithVariable(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
fills the variable as a clone of the variable
fillWithVariable(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
fills the variable as a clone of the variable
finalizeAVI() - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
finalize the output framework
finalizeImg() - Method in class com.lobsterman.JavaGrinders.Tracker.ImgProducer
 
finalizeInterface() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
 
finalizeInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
findBiggestTarget(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
finds the biggest target in the ;ist
findFirstSelectedRow() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the first selected row of the variable
findFirstSelectRow() - Method in class com.lobsterman.JavaGrinders.Variable
returns the first selected row of the variable
findFirstUseRow() - Method in class com.lobsterman.JavaGrinders.Variable
returns the first selected row of the variable
findLastInsideEdgePixel(Pixel, int, Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
finds a pixel on the outline of an object
findLastSelectedRow() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the last selected row of the variable
findLastSelectRow() - Method in class com.lobsterman.JavaGrinders.Variable
returns the last selected row of the variable
findLastUseRow() - Method in class com.lobsterman.JavaGrinders.Variable
returns the last selected row of the variable
findNextNonMissingRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the next selected row after a given row
findNextSelectedRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the next selected row after a given row
findNextSelectRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the next selected row after a given row
findNextUseRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the next selected row after a given row
findNextValidCell() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
returns the next valid cell in the data matrix
findNextValue(int, Object) - Method in class com.lobsterman.JavaGrinders.Variable
returns the next selected row after a given row
findPolygons(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
shows the objects found by the current settings
findPreviousSelectedRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the next lower selected row before a given row
findPreviousSelectRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the next lower selected row before a given row
findPreviousUseRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the next lower selected row before a given row
finishUpFrame() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
does whatever needs to be done after each cycle of the tracker
focusVal_Max - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
focusVal_Min - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
fold(double[], int, int, boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
folds an array of doubles into a DataTable and returns the object
fontMetrics - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
foreCol - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
forward - Static variable in class com.lobsterman.JavaGrinders.spatial.MoveVariable
 
foundTarget - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
FP - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
FProb - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
 
fractalDimension - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
frame_mod - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
FrameRenderer - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling a video tracking application
FrameRenderer(int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
empty constructor
frameTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
FREQ - Static variable in class com.lobsterman.JavaGrinders.VariableDesignRole
 
frequencies - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
FrequencyMatrixApplet - Class in com.lobsterman.JavaGrinders.Applets
manages the graphical user interface for the applet that implements analyses of cross-tabulation frequency tables.
FrequencyMatrixApplet() - Constructor for class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
from - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
 
FRONT - Static variable in class com.lobsterman.JavaGrinders.spatial.View
 
fsTiming - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
FSTIMING_RECORDPROCRUNNER - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
FSTIMING_SYNCHRONOUSCALLBACK - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
FSTIMING_UNKNOWN - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
FTDI2xx_RH - Class in com.lobsterman.JavaGrinders.control
Operates an FTDI device as an I2C port using the MPSSE feature.
FTDI2xx_RH(Device, int) - Constructor for class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
 
FTDI2xxInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
FTDI2xxInterface() - Constructor for class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
standard constructor for the DeviceInterface class
FTDI2xxInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
standard constructor for the DeviceInterface class
FTDI2xxInterface(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
standard constructor for the DeviceInterface class
FTDI_FT223H - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
FTDI_FT2322H - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
FTDI_FT4232H - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
FTDI_NONE - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
FTDIDeviceManager - Class in com.lobsterman.JavaGrinders.control
 
FTDIDeviceManager() - Constructor for class com.lobsterman.JavaGrinders.control.FTDIDeviceManager
 
FULL - Variable in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
fw - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
fw - Variable in class com.lobsterman.JavaGrinders.control.Experiment
 
fw - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
fwdDirectedness - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 

G

g2 - Variable in class com.lobsterman.JavaGrinders.Tracker.RHComponent
 
g2Comp - Variable in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
gapBetweenPanels - Variable in class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
 
generateCaptures(int) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
generates a set of Captures for all animals covered by the framework
generateMoves(int, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
generates a set of Moves for all animals covered by the framework
generateMoves(int, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
generates a set of Moves for all animals covered by the framework
generateMovesFromZero(int, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
generates a set of Moves starting from zero for all animals covered by the framework
get(int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get a single element.
get12BitValue(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
get16BitValue(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
get32BitValue(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
getAbasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the instance of char stored at a given row of the Vector and converts it into an integer starting with 0 at a char of 'A'
getabasedintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the instance of char stored at a given row of the Vector and converts it into an integer starting with 0 at a char of 'a'
getAD7147Cap1Read(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
Read the capacitance at sensor channel 1 from AD7147, The register map lists the address at It accesses register 'Z', i.e.
getAD7150Value(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
gets the sensor value.
getAD7151_Cap(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
Read the serial number of the 7151 chip.
getAD7151_SerNum(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
Read the serial number of the 7151 chip.
getAdvancedServoHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
returns an advanced servo phidget - if it exists
getAdvancedServoHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
returns an advanced servo phidget - if it exists
getAnalogOutHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns a analog out hardware - if it exists
getAnalogOutHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
returns a AnalogOut phidget - if it exists
getAnalogSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the interface's hardware device that does sensor access
getAngleFrequencies() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
creates and returns a variable containing the series of time distances between captures
getAngles() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns an array of distances for the moves
getAnglesFromLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the distances from one specific location
getAnglesToLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the direction to one specific location
getANOVAResults(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the ANOVA statistics for the variable
getANOVAResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the ANOVA statistics for a full factorial model
getAOI() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
returns the analysis area for the tracking job
getApertureTime(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
getAppletInfo() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
provided for future browsers to obtain development info
getAppletInfo() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
provided for future browsers to obtain development info
getArea() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the area of the polygon in screen pixels
getAreaDensRatio(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the object's point density in the forward half of the object
getArray() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Access the internal two-dimensional array.
getArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
returns an array of double values of the Vector
getArrayCopy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Copy the internal two-dimensional array.
getAutoCorrelationResults() - Method in class com.lobsterman.JavaGrinders.NumberVariable
obtains the Autocorrelation statistics for the variable
getAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
automatically finds and sets the number of units in the space
getAutoObjects(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
returns a guess for the objects to track
getAveragedSensorValue() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
standard constructor for the DeviceController class
getAxisFormula(float[]) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the formula for the eigenvector
getBarWidth() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
getBBSRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
calculates a cardinal rank (BBS method) for each individual
getBGRColorbytes(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
returns the value of the color pixels as bytes for BGR
getBinLoc(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns whether the GridSpace3D contains a SpatialVector
getBinMeans(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns a frequency distribution for a given set of bins
getBinnedCoordsXY(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
bins the captures into a FrequencyTable
getBinnedCoordsXY(int, int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
bins the captures into a FrequencyTable
getBinomial(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the binomial probability for k outcomes out of N trials where the probability of getting that outcome is p
getBinomialApproxProbability(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the one-tailed pobability for a binomial of k outcomes out of N trials where the probability of getting that outcome is p
getBinomialProbability(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the one-tailed pobability for a binomial of k outcomes out of N trials where the probability of getting that outcome is p
getBinomialProbability2Tail(int, int, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the one-tailed pobability for a binomial of k outcomes out of N trials where the probability of getting that outcome is p
getBitFromByte(byte, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of the bit at a particular position within the byte
getBlinkMVersion(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
Read the version on a specific BlinkM.
getBlue(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
returns the value of the blue pixel value as a byte
getbooleanValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the value stored at a given row of the Vector as a boolean
getBotLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
returns the y coordinate for labels on the bottom of the frame
getBoundPoly() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the factor matrix of the object outline for orientation
getBoydSilkRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
calculates a cardinal ranks for stochastic transitivity Boyd and Silk (1983) for each individual
getBufferedImageFromPanel() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
returns a BufferedImage of the panel's graphics port
getBusID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getByClosest(List<TargetCaptureData>, TargetCaptureData, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
matches up individual TargetCaptureData ArrayLists based on past locations
getByteLength() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
gets the byte length
getCameraID() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
returns the camera ID
getCapture(int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the capture stored at a given row of the Vector
getCaptureAtDistanceOnPath(int, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
obtains a coordinate along the path at a given travel distance
getCaptureAtTime(int, long) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
obtains a coordinate along the path at a given time
getCaptureAtTimeOnPath(long) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
obtains a coordinate along the path at a given time
getCaptureAtTimeOnPath(Date) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
obtains a coordinate along the path at a given time
getCaptureAtTimeOnPath(int, long) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
obtains a coordinate along the path at a given time
getCaptureVariable(int) - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns a specific Animal from the Population
getCell(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the double from one element of this matrix
getCellValue(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
returns the double from one element of this matrix
getCellValue(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the double from one element of this matrix
getCentered() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns a variable containing each values relative to its mean
getCenteredRectangle(Point, double, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
getCenterLocation() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the average neighbor distance
getCenterLocations() - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns a CaptureVariable with the arithmnetic centers for all members at any given time
getCenterPixel() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the pixel info for the center point
getCenterPixel() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the center of the target
getCenterVector() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the center vector of the object
getCentroid() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the centroid of the object
getChannelAccess() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns whether the interface is polling or event-driven
getChannelID() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
returns its channel
getcharValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the instance of char stored at a given row in the Vector
getChiSquaredCriticalValue(double, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Returns chi-squared probability for given value and degrees of freedom.
getChiSquaredProbability(double, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Returns chi-squared probability for given value and degrees of freedom.
getCircleLineIntersections(MoveVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the intersection points between a circle and a line segment
getCircleLineIntersections(SpatialVector, SpatialVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the intersection points between a circle and a line
getCircleLinesegmentIntersections(MoveVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the intersection points between a circle and a line segment
getCircleLinesegmentIntersections(SpatialVector, SpatialVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the intersection points between a circle and a line segment
getCircularDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns descriptive Circular Statistic for the variable using the currently selected set of rows
getCircularDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns descriptive Circular Statistic for the variable using the currently selected set of rows
getCircularDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the descriptive statistics for the angles of the moves using the currently selected set of rows
getCircularDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
lists the speed statistics for the variable using the currently selected set of rows
getClosest(List<TargetCaptureData>, TargetCaptureData) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
matches up individual TargetCaptureData ArrayLists based on past locations
getColLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a particular column label for the ContingencyTable
getColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns column labels for the ContingencyTable
getColMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
returns the sums for each column as a 1D double array
getColorDifference(Color, Color) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
get the average difference between two colors
getColorDifference(int[], byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
get the average difference between two colors
getColorDifference(byte[], byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
get the average difference between two colors
getColorDifference(float[], float[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
get the average difference between two colors
getColSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the sum for a particular row of the table
getColSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the row sums of the table
getColSums() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
returns the sums for each row as a 1 dimensional Matrix
getColumnArrayCopy(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Make a one-dimensional column copy of the internal array.
getColumnPackedCopy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Make a one-dimensional column packed copy of the internal array.
getColumnPs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the dimensions of the Table
getCombinations(int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the possible combinations
getCombinedIDs(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
returns a TreeMap containing all different values found in either this variable using the currently selected set of rows or in the selected rows of a second variable
getCombinedPaintedPathAreaSize() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
makes the polygon that is covered by all the moves at a given width.
getCombinedPathArea() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
makes the polygon that is covered by all the moves at a given width.
getCompareHighValue() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
gets the high value for a comparison
getCompareLowValue() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
gets the low value for a comparison
getConfidenceInterval(double) - Method in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
reports the confidence interval
getConnect() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns whether the Capture should be visually connected
getConnect() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
sets whether the move should be visually connected
getConsolidatedTimeLine(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.Group
It coordinates times for all captures to conform to the same underlying timeline
getConstraint() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the spatial constraint for the population
getConstraint() - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns the spatial constraint for the group
getConstraint() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
returns the arena linked to the framework
getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
performs a Test of Independence on the ContingencyTable/ and reports the results as statistics for X2 and loglikelihood ratio.
getContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the results for a test of independence with expected frequencies calculated from observed
getContingencyTableResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the results for a test of independence with the provided expected values
getControlDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the device controller for a particular position in the ArrayList - if available
getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
returns a control arduino - if it exists
getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the interface's hardware device that switches relays
getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
returns an output phidget - if it exists
getControlHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
returns an output phidget - if it exists
getControlInterface() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
returns the control interface
getCoordMapRect() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
gets the Presenter that owns the Panel
getCorrelationResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
getCorrMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
calculates a correlation matrix for continuous, dependent variables.
getCrossTabulation(Variable, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
returns a crosstabulation of values for two variables in form of a matrix
getCrossTabulation(Variable, TreeMap<Object, Integer>, TreeMap<Object, Integer>, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
returns a crosstabulation of values for two variables in form of a matrix
getCurrent() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
getCurrentLocation() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the current location for the animal
getCustomColorRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the custom color for a given row
getD() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
Return the block diagonal eigenvalue matrix
getDarkestPixel() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
getDataChannelDescriptor() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
lists the info
getDataFileName() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
gets the data file name
getDataNotes() - Method in class com.lobsterman.JavaGrinders.BasicData
 
getDataRate() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
get the data rate
getDataTimeStamp() - Method in class com.lobsterman.JavaGrinders.BasicData
 
getDataValue() - Method in class com.lobsterman.JavaGrinders.BasicData
 
getDateValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
returns the time stored at a given row of the Vector as a Date
getDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns the descriptives for the variable
getDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns the descriptives for the variable
getDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
returns the descriptives for the variable
getDeviceController() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
gets the device controller
getDeviceName() - Method in class com.lobsterman.JavaGrinders.control.Arduino
returns the name of the device
getDeviceName() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getDeviceNumber() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the device operator for a particular position in the ArrayList - if available
getDeviceOperatorForChannel(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the device operator for a particular position in the ArrayList - if available
getDeviceSensor() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
gets the device sensor
getDeviceSerialNumber() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getDeviceType() - Method in class com.lobsterman.JavaGrinders.control.Arduino
returns the type of the device
getDeviceType() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the mode for the DeviceInterface
getDeviceTypeStr() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
gets the string for the device type
getDeviceVendor() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getDeviceVersion() - Method in class com.lobsterman.JavaGrinders.control.Arduino
returns the version of the device
getdf() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the degrees of freedom for the ContingencyTable
getDifferenceTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of dominance relationships between actor and receiver
getDirection() - Method in class com.lobsterman.JavaGrinders.Grid
returns the direction of the Axis
getDirectionalErrorToGoal(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
lists the speed statistics for the variable using the currently selected set of rows
getDirectionRad(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the direction of the object in radians
getDiscriminantFunctionValues(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Calculates the discriminant function values for the different groups
getDisplayPanel() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
The routine creates the Applets display panel out of a set of hierarchical containers.
getDistance(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
find the angle that is halfway between the two angles in a clockwise direction
getDistanceMatrix(int) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
calculates a matrix of distances between all valid (i.e., selected and non-missing) locations
getDistanceNet() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the net distance between start and end Capture
getDistances() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns an array of distances for the moves
getDistancesToLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
returns the distances to one specific location
getDistanceToLinesegment(MoveVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
 
getDistanceToLinesegment(SpatialVector, SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
 
getDistanceTotal() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the distance totals for the Captures if connected
getDominanceActivityIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
calculates a dominance activity index for each individual
getDominanceIndex() - Method in class com.lobsterman.JavaGrinders.InteractionTable
calculates a dominance index for each individual
getDominanceMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of dominance relationships between actor and receiver
getdoubleArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
returns an array of double values of the Vector
getDoublePivot() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
Return pivot permutation vector as a one-dimensional double array
getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the value stored at a given row of the Vector as a double
getDoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the value stored at a given row of the Vector as a double
getdoubleValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the value stored at a given row of the Vector as a double
getDuration() - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
returns the duration of the interaction
getDuration() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the time the move took
getDurations() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns an array of speeds for the moves
getEarliestTimeRef() - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns the earliest time reference for the group
getEndCapture() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the end capture for the animal
getEndCapture() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the end capture of the move
getEndTime() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the start time for the animal
getEndTime() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the end capture of the move
getEndTime() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
returns the end time in milliseconds
getEndTimes() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
creates and returns a variable containing the end times for these moves
getEndX() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the end capture of the move
getEndY() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the end capture of the move
getEuclidianDistance(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the straight-line distance between two points
getExpectedMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of expected values for a test of independence
getExpectedMatrix(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of expected values for a test of independence
getExpMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of expected values for a test of independence
getExpMatrixFromProbabilities() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of expected values for a test of independence
getExpMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of expected values for a test of independence if the diagonal is structurally zero
getExponent(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the exponent in scientific notation
getExternalData() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
gets the Object to print after the data
getFCriticalValue(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Critical value for given probability of F-distribution.
getFile(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
user selects a file to load
getFileChooser() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
user selects a file to open
getFileDialog(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
user selects a file to load
getFillColor() - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
returns the fill color of the bars
getFirstDerivative(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns a variable containing each values relative to its mean
getFirstLabelColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the first label variable in the VariableOrganizer
getFirstXColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the first dependent (X) variable in the VariableOrganizer
getFirstYColumn() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the first dependent (Y) variable in the VariableOrganizer
getFisherWeights() - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Returns the weight for the linear fisher's discrimination functions
getfloatValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the value stored at a given row of the Vector as a float
getFocusDistance(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
getFoundObjectBytes(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
utility function to get the 9 pixel bytes around x.y
getFProbability(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Computes probability of F-ratio.
getFractalDimension() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the fractal dimension of the coordinates
getFractalDimension(double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the fractal dimension of the coordinates
getFrameRate() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
returns the preferred frame rate
getFrameRate() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
returns the current frame rate
getFrequencies(Grid) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns a frequency distribution for a given set of bins
getFrequencies() - Method in class com.lobsterman.JavaGrinders.Variable
returns the frequencies for different instances of the variable using the currently selected set of rows up to the specified number of maxInstances
getFrontArea(double, float, TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns the area in front of the animal
getFTDI2xxHardware() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
returns a FTDI interface - if it exists
getFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns Freeman-Tukey deviates for a cell wise examination of the table
getGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
coordinates a replicated goodness of fit test
getGraphPeakIntervals(NumberVariable, NumberVariable, int, int, float, float, double, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
graphs the peak intervals
getGray(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
returns the value of a gray scale pixel value as an int
getGrayBit(int, int, BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
gets a gray value from a pixel of a BufferedImage
getGrayByteArray(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
gets a gray value from a pixel of a BufferedImage
getGrayPixelMax(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
reports the max gray scale value for the current area of interest
getGrayPixelMax(TrackingJobSetting) - Method in interface com.lobsterman.JavaGrinders.Tracker.ObjectTracer
 
getGrayValue(int, int, BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
gets a gray value from a pixel of a BufferedImage
getGreen(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
returns the value of the green pixel value as a byte
getGrid() - Method in class com.lobsterman.JavaGrinders.Grid
returns the grid in the dimension
getGridInterval() - Method in class com.lobsterman.JavaGrinders.Grid
returns the grid interval for the axis
getGridSpace3D() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
returns the GridSpace used in mapping the points
getGridSpaceFromVars() - Method in class com.lobsterman.JavaGrinders.spatial.Group
creates a new Constraint that includes all selected coordinates of all selected animals
getGroup() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
returns the group of animals linked to the framework
getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the descriptives for the groups identified by X
getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
lists the descriptives for the groups identified by X
getGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the descriptives for the groups identified by X
getGroupMeans(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
returns an array of means of Ys for multiple states defined in X
getGroupMVDescriptives(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
returns an array of multivariate Y descriptives for multiple states defined in X
getGroupNs(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
returns an array of sample sizes of Ys for multiple states defined in X
getGroupVarCovars(VariableOrganizer, Variable) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
returns an array of varCovar matrices of Ys for multiple states defined in X
getH() - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
Return the Householder vectors
getHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the interface's hardware
getHaversineDistance(SpatialVector, SpatialVector) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Returns the straight-line distance (in meters) between two locations defined as longitude/latitude (in degrees)
getHaversineDistance(SpatialVector, SpatialVector, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Returns the Vector in meter distance and bearing degrees (counterclockwise from East) between two locations defined as longitude/latitude (in degrees).
getHeading() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the end capture of the move
getHigh() - Method in class com.lobsterman.JavaGrinders.Grid
returns the high value
getHighliteColor() - Method in class com.lobsterman.JavaGrinders.Variable
returns the highlite color for the animal
getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns whether a given row is currently highlited.
getHighlitedRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns whether a given row is currently highlited
getHighX() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the low x value for the Gridpsace3D
getHighY() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the low x value for the Gridpsace3D
getHighZ() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the low x value for the Gridpsace3D
getHLabelPos(double, String) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
returns the horizontal position for the String
getHodgesN() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the descriptive circular statistics for the angle variable
getHodgesP(double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns the angle where the maximum number of angles are clustered within a range of 180 degrees
getHotellingF(SquaresCrossproductResults) - Method in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
returns Hotelling's Statistic for differences in mean angle
getHotellingFResults(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the results from an analysis of differences in mean angles for a variable of locations
getHotShapeList() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the hot spaces that trigger the interface
getHotShapes() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
returns the hot regions
getHSBColorVals(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
returns the HSB color values for an RGB Color
getHSBColorVals(Color) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
returns the HSB color values for an RGB Color
getHTilePosition() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
gets the horizontal tile position for the tracking job
getHypothesisPs() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
returns the expected probabilities for different columns
getI2CHardware() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
gets the hardware for i2c
getI2CHardware_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
gets the FTDI hardware for i2c
getI2CHardware_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
gets the LinkM hardware for i2c
getIDMap() - Method in class com.lobsterman.JavaGrinders.Variable
returns a TreeMap containing all different values found in the variable using the currently selected set of rows
getIDs() - Method in class com.lobsterman.JavaGrinders.Variable
returns a TreeMap containing all different values found in the variable using the currently selected set of rows
getIDString(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns a single entry for a key in the TreeMap as a String
getIDStrings() - Method in class com.lobsterman.JavaGrinders.Variable
returns the keys in the TreeMap as strings
getIFKitHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
returns a interface kit phidget - if it exists
getImage() - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
returns the image to display in the panel
getImage() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
returns the Image for the Component
getImagEigenvalues() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
Return the imaginary parts of the eigenvalues
getInt(byte[]) - Static method in class com.lobsterman.JavaGrinders.control.LinkM_RH
returns the integer for the byte array
getIntAngleDeg(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Returns an angle in Degrees (°) as an integer between -180 and 180
getInteractions(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
returns a crosstabulation of values for two variables in form of an interaction matrix
getInterfaceType_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getInterpolatedCaptureAtDistance(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
interpolates and returns the capture within this move at a given distance from the start
getInterpolatedCaptureAtTime(long) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the interpolated capture of the move
getInterpolatedTimeAtCapture(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the interpolated capture of the move
getIntersectionsWithCircle(SpatialVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the point of intersection of this move with a circle of a given radius
getintValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the value stored at a given row of the Vector as an int
getItemValues(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists the Variables registered with the VariableOrganizer
getItsName() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the name for the interface
getItsRect() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
updates the analysis areas for the tile group
getItsRenderer() - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
set the frame renderer
getJaccard(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
returns the Manhattan proximity measure to another variable
getK(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns K for the Watson-Williams Test
getL() - Method in class com.lobsterman.JavaGrinders.Jama.CholeskyDecomposition
Return triangular factor.
getL() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
Return lower triangular factor
getLabelBars() - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
getLabelEveryN() - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
getLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
return the currently selected set of labels
getLabelXGrid() - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
getLabelYGrid() - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
getLatestTimeRef() - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns the latest time reference for the group
getLeftLabelPos(String) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
returns the y coordinate for labels on the top of the frame
getLength() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
retrieves the length of the vector
getLength() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Reports the magnitude of this vector
getLengthSquared() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Reports the magnitude of this vector squared
getLibraryVersion() - Static method in class com.lobsterman.JavaGrinders.control.Arduino
closes the device
getLinearityResults() - Method in class com.lobsterman.JavaGrinders.DominanceTable
returns results from a Test of Linearity.
getLineColor() - Method in class com.lobsterman.JavaGrinders.Variable
returns the line color for the variable
getLinkMHardware() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
returns a interface kit phidget - if it exists
getLocationColor() - Method in class com.lobsterman.JavaGrinders.Variable
returns the location color for the variable
getlongValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the instance of long stored at a given row in the Vector
getLow() - Method in class com.lobsterman.JavaGrinders.Grid
returns the low value
getLowerWayParametricTermsSum(int) - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
getLowX() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the low x value for the Gridpsace3D
getLowY() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the low x value for the Gridpsace3D
getLowZ() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the low x value for the Gridpsace3D
getMahalanobisDist(Matrix, Matrix, Matrix) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the Mahalanobis Distance
getMahalanobisDistance(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Calculates the discriminant function values for the different groups based on Mahalanobis distance
getMahalanobisDistSquared(Matrix, Matrix, Matrix) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the squared Mahalanobis Distance
getMahalanobisDistVar(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
returns a column of Mahalanobis distances for individual items defined by multiple Y columns
getMajorAngleDeg() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the length of the Polygon
getMajorAngleRad() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the length of the Polygon
getMajorAxis() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
finds the major axis through the object
getMajorFactorPattern() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the angle for the eigenvector
getManhattan(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
returns the Manhattan proximity measure to another variable
getManhattanDistance(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the straight-line distance between two points
getManhattanLength() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Reports the magnitude of this vector
getMannWhitneyUProbability(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the probability for a given Mann Whitney U statistic
getMantelP(ContingencyTable, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
performs Mantel's test with number of permutations limited by MaxPermutations
getMantelZ(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
calculate Mantel's Z statistic for a matrix and a second matrix passed in
getManWhitneyUResults(Variable, double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the results from an analysis of differences in mean angle distance from a hypothetical direction
getMatrix(int, int, int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get a submatrix.
getMatrix(int[], int[]) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get a submatrix.
getMatrix(int, int, int[]) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get a submatrix.
getMatrix(int[], int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get a submatrix.
getMatrixSize() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the dimensions of the Table
getMaxDiff() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
getMaxValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the maximum value stored in the Vector
getMaxValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of dominance relationships between actor and receiver
getMaxVoltage(int) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
returns the output voltage on a channel.
getMean(double[]) - Static method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Returns the mean of the given values.
getMeanBackgroundColor(TrackingJobSetting, List<SGPolygon>, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
utility function to get the average background color for the trackjob
getMeanDistanceToLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
returns the average neighbor distance
getMeanValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the average for values stored in the Vector
getMedian() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
fills the descriptive circular statistics for the angle variable
getMember(int) - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns a specific Animal from the entire group
getMemoryRegister() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
returns a specific memory register
getMetricDistsFromLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
if the Captures are defined in longitude and latitude then this function converts these to distanced measures in meters using Haversines
getMetricDistsFromLatLong(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
if the Captures are defined in longitude and latitude then this function converts these to distanced measures in meters using Haversines
getMilliSecondsToWait() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
getMilliSecondsValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
returns the time stored at a given row of the Vector in milliseconds
getMilliSecsBetween(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the difference in timestamps for this and another vector in milliseconds, the other vector can be either earlier or later.
getMinConvexPolygon() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
returns the minimum convex polygon that includes the captures
getMinNeighborDistance() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the minimum neighbor distance
getMinorAngleDeg() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the length of the Polygon
getMinorAngleRad() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the length of the Polygon
getMinorAxis() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
finds the minor axis through the object
getMinorFactorPattern() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the angle for the eigenvector
getMinValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the minimum value stored in the Vector
getMinValueCell() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of dominance relationships between actor and receiver
getMissingRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns whether a given row is currently missing.
getMotorCount() - Method in class com.lobsterman.JavaGrinders.control.Arduino
returns the number of servo motors controlled by the Arduino
getMoveAngles(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the series of distances between captures
getMoveArea() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the area of the move at a given width
getMoveDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the descriptive statistics for the moves within the variable and returns the results
getMoveDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the descriptive statistics for the moves within the variable and returns the results
getMoveDescriptives(boolean, double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
fills the descriptive statistics for the moves within the variable and returns the results
getMoveDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
fills and returns the Descriptives with the default cutoff for movement
getMoveDescriptives(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
fills and returns the Descriptives
getMoveDirection() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
getMoveDirectionString() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
getMoveDistances() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the series of distances between captures
getMovementCutoff() - Method in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
returns the cutoff value below which moves are considered stationary
getMovePoly() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the area of the move at a given width
getMoves() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the series of absolute moves between captures
getMoves(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the series of moves between captures
getMoveSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the series of distances between captures
getMoveVector(int) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns the Move stored at a given row of the Vector
getMovingAverageSmoothing(int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns a variable containing each values relative to its mean
getMultLinRegressionResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
getName() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the dimensions of the Table
getName() - Method in class com.lobsterman.JavaGrinders.Variable
returns the name of the Variable
getNCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the total number of cells for the ContingencyTable
getNCellsAboveEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the number of cells above or equal to a given value
getNCellsAboveValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the number of cells above a given value
getNCellsBelowEqualValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the number of cells below or equal to a given value
getNCellsBelowValue(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the number of cells below a given value
getNCols() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the number of columns of the Table
getNColumns() - Method in class com.lobsterman.JavaGrinders.DataFileParser
provides read access to private variable nCols
getNColumns() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get column dimension.
getNControlDeviceOperators() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the number of serial device controllers registered with the interface
getNDataRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
returns the number of valid data rows that were read from the text file
getNDeviceOperators() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the number of serial device controllers registered with the interface
getNDiagonals() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the total number of diagonal cells for the ContingencyTable
getNextSelectLabelIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the next label column after a given column
getNextSelectXColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the next selected column after a given column
getNextSelectYColumnIndex(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the next selected column after a given column
getNI2CDevices() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
gets the number of i2c devices
getNIDs() - Method in class com.lobsterman.JavaGrinders.Variable
returns the number of different values present in the currently selected set of rows
getNInteractionTerms(int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the number of interaction terms that are part of the factorial model
getNInterfaceChannels() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the number of channels for the interface
getNLabels() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
how many labels are under the control of this VariableOrganizer
getNMembers() - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns the number of members in the group
getNMissingRows() - Method in class com.lobsterman.JavaGrinders.Variable
returns the number of missing rows in the currently selected set
getNormalCriticalValue(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Returns the critical value for a given probability
getNormalProbability(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Returns the probability that the standardized normal variate Z (mean = 0, standard deviation = 1) is greater than z.
getNotes() - Method in class com.lobsterman.JavaGrinders.Variable
returns the Notes of the Variable
getNoZeroCellMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the values from the matrix with a constant of 0.25 added to each cell
getNPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the size of the coordinate array of the polygon
getNRows() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the number of rows of the Table
getNRows() - Method in class com.lobsterman.JavaGrinders.DataFileParser
provides read access to private variable nRows
getNRows() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get row dimension.
getNRows() - Method in class com.lobsterman.JavaGrinders.Variable
returns the number of rows in the Variable
getNRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the number of rows for the VariableOrganizer
getNSelectRows() - Method in class com.lobsterman.JavaGrinders.Variable
returns the number of currently selected rows for the variable
getNSelectRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the number of selected rows
getNSensorDeviceOperators() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the number of serial device controllers registered with the interface
getNSubAreas() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
lists the segments of the polygon
getNTraces() - Method in class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
returns the number of traces in the Panel
getNTrackingJobSettings() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
returns the length of the array of tracking jobs
getNumberDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the descriptive statistics for the variable and returns the results
getNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
returns the number of units in the space
getNUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
returns the number of currently selected rows for the variable which do not have missing values
getNUVCDevices() - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
getNValidRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the number of valid rows in the currently selected set
getNValidTargets(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
examines for valid TargetCaptureData in the TargetCaptureData list
getNValidTargets(TargetCaptureData[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
examines for valid TargetCaptureData in the TargetCaptureData array
getNVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
how many variables are under the control of this VariableOrganizer
getnWay(int) - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
getNXVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
returns the number of independent variables in the Organizer
getNXVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
how many X variables are under the control of this VariableOrganizer
getNYVariables() - Method in class com.lobsterman.JavaGrinders.Analyzer
returns the number of dependent variables in the Organizer
getNYVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
how many Y variables are under the control of this VariableOrganizer
getObjectLength() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the object's length
getObjectWidth() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the object's width
getObjLength() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns the length of the TargetCaptureData record
getObjSizeVar() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
gets the acceptable amount of variation in object size
getObjWidth() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns the width of the TargetCaptureData record
getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.DominanceTable
returns ordinal ranks for each individual
getOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
returns individual ordinal ranks from matrix of interactions between entities
getOrganizer() - Method in class com.lobsterman.JavaGrinders.Analyzer
returns the VariableOrganizer instance
getOrganizer() - Method in class com.lobsterman.JavaGrinders.Variable
returns the VariableOrganizer for the Variable
getOrientedAngles() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the long and wide angles for the target in radians
getOrientedBoundBox() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the factor matrix of the object outline for orientation
getOrientedDimensions() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the factor structure of the object outline for orientation
getOrientedPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the factor matrix of the object outline for orientation
getOrigin() - Method in class com.lobsterman.JavaGrinders.Grid
returns the origin of the dimension
getOS() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
getParameterInfo() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
provided for future browsers to list the type of parameters the applet needs to function properly and which options are available
getParser() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
gets the parser
getPathCoordinate(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
gets the point for a row from the SGPolygon
getPathOutline() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the area of the move at a given width
getPeakArea() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
getPeakData(ArrayList<Integer>, NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
removes the smaller peak if two are too close
getPeakHeight() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
getPeakIntervals(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
removes the smaller peak if two are too close
getPeakLocations(NumberVariable, int, float, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
from Tom O'Haver's toh@umd.edu great tutorial at
getPeaks(NumberVariable, NumberVariable, int, int, float, float, double) - Method in class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
lists the results from an analysis of one independent (continuous) and one dependent variable.
getPeaksPalshikar(int, float) - Method in class com.lobsterman.JavaGrinders.NumberVariable
A standard peak detector in time series by Jean-Yves Tinevez jeanyves.tinevez@gmail.com May 10, 2011 The goal of this class is to identify peaks in a 1D time series (float[]).
getPeakTime() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
getPeakTriggeredTraces(NumberVariable, ArrayList<Integer>, long) - Method in class com.lobsterman.JavaGrinders.NumberVariable
from Tom O'Haver's toh@umd.edu great tutorial at
getPeakValues(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
removes the smaller peak if two are too close
getPeakWidth() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
getPerimeter() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the perimeter of the polygon in screen pixels
getPerimeterDensRatio(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the object's perimeter in the forward half of the object
getPermutedTable(int[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
gets a variant of the interactionTable with rows and columns switched with a given permutation
getPivot() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
Return pivot permutation vector
getPixelSpaceX() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the number of x pixels in screen space
getPixelSpaceY() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the number of y pixels in screen space
getPixelSpaceZ() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the number of z pixels in screen space
getPlotTargetStyle() - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
getPointDensRatio(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the factor matrix of the object outline for orientation
getPointInRectangle(double, double, Rectangle2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Returns a point based on (x, y) but constrained to be within the bounds of a given rectangle.
getPolarVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the angle in degrees to another point.
getPort_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getPortID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getPortParent_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getPreviousInterval() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
getProbabilityEstimates(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Calculates the probability for the membership in the different groups
getProductID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getProductName_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getProductName_uvc() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getProductTypeID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getProductTypeString_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getPropMatrixDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of expected values for proportional fitting with diagonal present
getPropMatrixNoDia() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix of expected values for proportional fitting with diagonal absent (see Bishop et al., 1975; following Freeman, 1992)
getProximity(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
returns the proximity measure to another variable
getProximity(Variable, int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the proximity measure to another variable
getQ() - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
Generate and return the (economy-sized) orthogonal factor
getR() - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
Return the upper triangular factor
getRampBlackColorTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
getRampColorBlackTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
getRampColorDownTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
getRampColorUpTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
getRampColorWhiteTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
getRampWhiteColorTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
getRandomValue() - Method in class com.lobsterman.JavaGrinders.Variable
returns the object stored at a randomly selected row of the Vector
getRange() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the minimum value stored in the Vector
getRanks() - Method in class com.lobsterman.JavaGrinders.NumberVariable
return the ranks for the values in this array of the currently selected subset
getRaoSpacing() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns Rao's Spacing Statistic for the variable using the currently selected set of rows.
getRaoSpacingCriticalValue(double, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the critical value of the Rao spacing statistic
getRaoSpacingProbability(double, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the probability for Rao's Spacing Statistic for the variable using the currently selected set of rows.
getRayleighR() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns Rayleigh's R Statistic for the variable using the currently selected set of rows
getRayleighZ() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns Rayleigh's Z Statistic for the variable using the currently selected set of rows
getRealEigenvalues() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
Return the real parts of the eigenvalues
getRectangle(Point, Point) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
getRed(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
returns the value of the red pixel value as a byte
getReferenceImageEdits() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
gets the reference edits for the RecordProc
getRegisters(byte, int) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
cycle and report from all the registers
getRegressionResiduals(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
getRegressionResiduals(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
getRegressionResiduals(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over th intercept
getRegressionResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
getRegressionResults(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
getRegressionResults(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
getRelayHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
returns a relay arduino - if it exists
getRelMoveVector() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the difference vector of the move relative to the previous heading direction
getRelMoveVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the difference vector of the move relative to the previous heading direction
getReplicatedGoodnessOfFitResults(Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
reports a replicated goodness of fit test for the ContingencyTable
getReportType() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
getResampledVariable(int) - Method in class com.lobsterman.JavaGrinders.Variable
return the variable after resampling
getRGBforWaveLength_Human(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ColorUtilities
Creates a Color object given the wavelength instead of the usual RGB or HSB values.
getRGBforWaveLength_Screen(float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ColorUtilities
Creates a Color object given the wavelength instead of the usual RGB or HSB values.
getRightLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
returns the y coordinate for labels on the bottom of the frame
getRoundness() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the roundness factor of the polygon as object perimeter squared divided by object area.
getRowArrayCopy(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Make a one-dimensional row copy of the internal array.
getRowLabel(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a particular row label for the ContingencyTable
getRowLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns row labels for the ContingencyTable
getRowMeans() - Method in class com.lobsterman.JavaGrinders.DataTable
returns the means for each row as a 1D double array
getRowNumbers() - Method in class com.lobsterman.JavaGrinders.Variable
returns the number of currently selected rows for the variable
getRowOrder() - Method in class com.lobsterman.JavaGrinders.Variable
returns the row order for the Variable
getRowOrderRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the row order
getRowPackedCopy() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Make a one-dimensional row packed copy of the internal array.
getRowSum(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the sum for a particular row of the table
getRowSums() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the row sums of the table
getRowSums() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
returns the sums for each row as a 1 dimensional Matrix
getS() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Return the diagonal matrix of singular values
getSameXYScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
x and y Axis measures are at the same scale
getSameXYZScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
x, y and z Axis measures are at the same scale
getScaledPoint(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Scales a single location to a frame's x and y scale values
getSDValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the average for values stored in the Vector as a double
getSecondsValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
returns the time stored at a given row of the Vector in seconds
getSecondsVariable() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
returns the variable with time in seconds
getSecsBetween(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the difference in timestamps for this and another capture in seconds, the other capture can be either earlier or later.
getSelectCell(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns whether a given cell of the datamatrix is currently selected
getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns whether a given row is currently selected.
getSelectRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns whether a given row is currently selected
getSensorDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the device sensor for a particular position in the ArrayList - if available
getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
returns a sensor arduino - if it exists
getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the interface's hardware device that switches relays
getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
returns a sensor phidget - if it exists
getSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
returns a sensor phidget - if it exists
getSensorRawValue(int) - Method in class com.lobsterman.JavaGrinders.control.Arduino
returns the sensor value for the device on one channel.
getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
gets the sensor's value from a channel
getSensorValue(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
starts the device on one channel.
getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
starts the device on one channel.
getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
gets the sensor value.
getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
gets the sensor's value from a channel
getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
returns the sensor value for the device on one channel.
getSensorValue(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
gets the sensor's value from a channel
getSensorValue() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
gets the sensor value
getSensorValue() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
gets the sensor value
getSerialNumber() - Method in class com.lobsterman.JavaGrinders.control.Arduino
returns the serial number of the device
getSerialNumberString_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getServoHardware() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
returns a servo arduino - if it exists
getServoHardware() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
returns a servo phidget - if it exists
getShapeRatio(SingularValueDecomposition) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the ratio of major vs minor axis
getSign(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Examines a double and returns its sign as an integer
getSignalGenerator() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
returns the operator's signal generator
getSignedRank(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the signed ranks of distances to the specified value
getSignedRankW(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the one-tailed sum of signed ranks
getSignedRankWProbability(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the one-tailed robability of obtaining this Signed Rank W or greater
getSingularValues() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Return the one-dimensional array of singular values
getSlope() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
returns the slope for the Regression formula
getSpace() - Method in class com.lobsterman.JavaGrinders.Grid
returns the grid space
getSpaceWidth() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
getSpatialDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
fills the descriptive statistics for the variable and returns the results
getSpatialDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
fills the descriptive statistics for the variable and returns the results
getSpatialMapLook() - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
returns the look of the Map
getSpatialVector(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the angle in degrees to another point.
getSpatialVector(int) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
returns the SpatialVector stored at a given row of the Vector
getSpeed(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the speed of travel between this and another capture as distance/second
getSpeed() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the speed for the move
getSpeed() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
getSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns an array of speeds for the moves
getSquaredDisplacementFunction() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
obtains the mean squared displacement
getSquaredDisplacements() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
obtains the mean squared displacement
getSquaredEuclidianDistance(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the straight-line distance between two points
getSquEuclidian(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the Euclidian proximity measure to another variable
getSSCPMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
calculates a variance/covariance matrix for continuous, dependent variables.
getSSCPMatrixJ(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
calculates a correlation matrix for continuous, dependent variables.
getStartCapture() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the start capture for the animal
getStartCapture() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the start capture of the move
getStartTime() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the start time for the animal
getStartTime() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the start capture of the move
getStartTime() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
returns the start time in milliseconds
getStartTimes() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
creates and returns a variable containing the start times for these moves
getStartX() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the start capture of the move
getStartY() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the start capture of the move
getStatus() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
getStatusLED() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
gets the status LED of the tracker
getStraightnessIndex(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
obtains the straightness across two line segments which meet with a specific angle
getString() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
returns the cell value as a formatted String or the label string
getString(Pointer<Byte>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
getStringArray(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
returns the object stored at a given row of the Vector as a String
getStringValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the capture stored at a given row of the Vector as a String
getStringValue(int) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns the value from a given row in the array as a String object
getStringValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the object stored at a given row of the Vector as a String
getSubImage(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
returns the buffered image for the export region
getSubRect() - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
returns the export region
getSumValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the average for values stored in the Vector
getSurround(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns the area around the animal
getSurroundEllipse(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns the area around the animal
getTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
returns the crosstabulation (i.e., frequency) table
getTablePs() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the dimensions of the Table
getTargetArea() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the length of the Polygon
getTargetData(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the ratio of major vs minor axis
getTargetDataForTrackJob(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
report the info on the matching target
getTargetDescriptor() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns whether the TargetCaptureData record was found on its main pass through the image
getTargetDescriptor() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
gets the targetDescriptor for the tracking job
getTaskState() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
gets the task state of the RecordProc
getTauKr() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
organize a TauKr test for a correlation between actor and receiver matrix
getTauKrP(double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
performs the Kr test with number of permutations limited by MaxPermutations
getTCriticalValue(double, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Critical value for given probability of F-distribution.
getTimeBetweenFrames() - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
returns the time between frames
getTimeDifferenceMatrix() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
calculates a matrix of distances between all valid (i.e., selected and non-missing) locations
getTimeMilliSecs() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the timestamp for this capture
getTimeRef() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the timestamp for this capture
getTimeRefs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the times for these captures
getTimerTask() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
getTimes() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the times for these captures
getTimes(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
return the Vector for the times of a given track job
getTimesBetweenCaptures() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
creates and returns a variable containing the series of time distances between captures
getTimeSecs() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the timestamp for this capture
getTimeString() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the timestamp for this capture as a string
getTimeString(SimpleDateFormat) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
returns the timestamp for this capture as a string
getTimeSum() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns the amount of time covered by the moves
getTimeSynchronizedCaptures(CaptureVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
synchronize the two CaptureVariables, so the precise locations at each time are interpolated
getTinyStepPath(int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
traces the current selected path in small increments
getTopLabelPos() - Method in class com.lobsterman.JavaGrinders.PresenterPanel
returns the y coordinate for labels on the top of the frame
getTotal() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
getTotalPaintedPathAreaSize() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
makes the polygon that is covered by all the moves at a given width.
getTotalsMatrix() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a matrix in which cells from actor and receiver section of the ContingencyTable have been summed into a total cell value
getTotalSum() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the sum for a particular row of the table
getTProbability(double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the one-tailed probability for a t value such as this or greater under the normal Curve (t Distribution) starting at positive infinity with a mean of zero and a variance or 1 in Algorithn AS 3 Appl.
getTProbability2Tail(double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the two-tailed probability for a t value such as this or greater under the normal Curve (t Distribution) starting at positive infinity with a mean of zero and a variance of 1 in Algorithn AS 3 Appl.
getTracker() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns the tracker that controls the interface
getTrackingJobSetting(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
return one tracking job
getTrackingJobSetting(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
returns a specific tracking jobs
getTrackingJobSettingsGroup() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
returns the group of tracking jobs
getTransitions() - Method in class com.lobsterman.JavaGrinders.Variable
returns the transitions among consecutive values in form of a matrix
getTriggerProc() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
lists the info
gettTestResults(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
obtains the t-Test results for the variable
gettValue(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the average for values stored in the Vector as a double
getU() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
Return upper triangular factor
getU() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Return the left singular vectors
getUSBDevices() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
returns the USB devices
getUSBDevices(boolean) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
returns the USB devices
getUseRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns whether a given row can be used.
getV() - Method in class com.lobsterman.JavaGrinders.Jama.EigenvalueDecomposition
Return the eigenvector matrix
getV() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Return the right singular vectors
getV(Double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns V for the Modified Rayleigh Test for Uniformity vs.
getValue() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
returns the double value for the cell
getValue(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
returns the output voltage on a channel.
getValue(int) - Method in class com.lobsterman.JavaGrinders.Variable
returns the object stored at a given row of the Vector
getVarCovarMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
calculates a variance/covariance matrix for continuous, dependent variables.
getVarCovarMatrixJ(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
calculates a correlation matrix for continuous, dependent variables.
getVariable(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a particular variable designated by a reference number, this corresponds to the zero-based order in which variables were registered with the VariableOrganizer.
getVariable(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a particular variable designated by a variable name
getVariableDesignRole() - Method in class com.lobsterman.JavaGrinders.Variable
returns the variable design role
getVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns whether a given column is currently chosen as X, Y, label or not selected
getVariableDesignRoleString() - Method in class com.lobsterman.JavaGrinders.Variable
returns the variable design role as a character string
getVariableFormat() - Method in class com.lobsterman.JavaGrinders.Variable
returns the variable format
getVariableIndex(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the position in the vector for a particular variable this corresponds to the zero-based order in which variables were registered with the VariableOrganizer.
getVariableIndex(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns the index of a particular variable designated by a variable name
getVariableMeans() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists the Variables registered with the VariableOrganizer
getVariableNames() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
return the names of all variables
getVariableType() - Method in class com.lobsterman.JavaGrinders.Variable
returns the variable type
getVarianceValue() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the average for values stored in the Vector
getVectorsFromLocation(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
returns the distances from one specific location
getVendorID_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getVendorName_usb() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getVendorName_uvc() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
getVersion() - Static method in class com.lobsterman.JavaGrinders.control.JavaGrinders_Control
 
getVersion(int) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
Get the version of a BlinkM at a specific address
getVersion() - Static method in class com.lobsterman.JavaGrinders.Jama.JavaGrinders_Jama
 
getVersion() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
getVersion() - Static method in class com.lobsterman.JavaGrinders.spatial.JavaGrinders_Spatial
 
getVersion() - Static method in class com.lobsterman.JavaGrinders.Tracker.JavaGrinders_Tracker
returns build and version of the Tracker part of the JavaGrinders library
getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCRecordProc
makes the ImagePixels from the video source
getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
fill the basic uncompressed image data into its proper slot
getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVRecordProc
fill the basic uncompressed image data into its proper slot
getVideoImage(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
fill the basic uncompressed image data into its proper slot.
getVideoProducer() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
returns the producer for recording to an AVI movie
getVLabelPos(double) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
returns the horizontal position for the String
getVoltage(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
returns the output voltage on a channel.
getVolume(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
obtains the volume of a space with width and height around the Vector
getVTilePosition() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
gets the horizontal tile position for the tracking job
getWatsonU2Probability(double, int, int) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the probability for a given Watson U2 statistic
getWatsonU2Results(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns the results from an analysis of differences in mean angles for a variable of locations
getWatsonWilliamsFResults(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns the results from an analysis of differences in mean angles for a variable of locations
getWheelerWResults(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
returns the results from an analysis of differences in mean angles for a variable of locations
getX() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
retrieves the x component
getX() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns the x-coordinate.
getXAxisDirection() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the directions of the x axis in the gridspace
getXGrid() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the x grid for the Gridpsace3D
getXPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the x coordinate array of the polygon
getXs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the x coordinates as a Vector
getXs(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
return the Vector for x coordinates
getXScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the scale of the x Axis
getXScale() - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
returns the x scale for plotting the coordinates
getXVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
returns the first dependent variable of the Organizer
getXY() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Scales a single location to a frame's x and y scale values
getXYAngle(Point3f, Point3f) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Return the heading in radians.
getXYAngles() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
returns a variable containing the angular speeds in deg/sec
getXYAngleSpeeds() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns a variable containing the angular speeds in deg/sec, positivr in one direction, negative in the other
getXYBorders() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the Rectangle bordering the Gridspace
getXYDeg() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
retrieves the longitude component in degrees - the angle if 2D only in xy
getXYDeg() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Return the XY heading in degrees.
getXYDeg(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the angle in degrees to another point.
getXYDirectionRad() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the direction of the target
getXYDirectionRad(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the direction of the target
getXYDirectionToRad(SpatialVector) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
get the direction of the target
getXYFromPCScores(double, double, float[], float[]) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the factor matrix of the object outline for orientation
getXYMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
returns the default map dimensions for the xy plot of the data
getXYRad() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
retrieves the longitude component in radians - the angle if 2D only in xy
getXYRad() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Return the latitudinal heading in radians.
getXYRad(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the angle in degrees to another point.
getXYRatio() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the ratio of x vs y dimensions
getXYZMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
returns the default map dimensions for the xyz plot of the data
getXZAngle(Point3f, Point3f) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Return the heading in radians.
getXZDeg() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
retrieves the latitude component in degrees
getXZDeg() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Return the latitudinal heading in radians.
getXZDeg(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the angle in degrees to another point.
getXZMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
returns the default map dimensions for the xz plot of the data
getXZRad() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
retrieves the latitude component in radians
getXZRad() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Return the longitudinal heading in radians.
getXZRad(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns the angle in degrees to another point.
getXZRatio() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the ratio of x vs z dimensions
getY() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
retrieves the y component
getY() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns the y-coordinate.
getYAxisDirection() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the directions of the y axis in the gridspace
getYGrid() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the y grid for the Gridpsace3D
getYPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the x coordinate array of the polygon
getYs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the x coordinates as a Vector
getYs(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
return the Vector for y coordinates
getYScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the scale of the y Axis
getYScale() - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
returns the x scale for plotting the coordinates
getYVariable() - Method in class com.lobsterman.JavaGrinders.Analyzer
returns the first independent variable of the Organizer
getYVariableNames() - Method in class com.lobsterman.JavaGrinders.Analyzer
returns the matrix of all continuous, dependent variables.
getYZAngle(Point3f, Point3f) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Return the heading in radians.
getYZMapDimensions() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
returns the default map dimensions for the yz plot of the data
getZ() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
retrieves the z component
getZAxisDirection() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the directions of the z axis in the gridspace
getZeroCells() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the number of empty cells for the ContingencyTable
getZGrid() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the z grid for the Gridpsace3D
getZPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the x coordinate array of the polygon
getzQuantiles() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns a variable containing each values relative to its mean
getZs() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
returns the x coordinates as a Vector
getZs(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
return the Vector for z coordinates
getZScale() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the scale of the z Axis
getzTransform() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns a variable containing each values relative to its mean
go() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
GoodnessOfFitResults - Class in com.lobsterman.JavaGrinders
holds a set of results obtained for an analysis of a contingency table
GoodnessOfFitResults(int, int, double[], int) - Constructor for class com.lobsterman.JavaGrinders.GoodnessOfFitResults
Standard constructor
GrahamPt2D - Class in com.lobsterman.JavaGrinders.Utilities
The Point class is an immutable data type to encapsulate a two-dimensional point with real-value coordinates.
GrahamPt2D(double, double) - Constructor for class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Initializes a new point (x, y).
GrahamScan - Class in com.lobsterman.JavaGrinders.Utilities
 
GrahamScan(GrahamPt2D[]) - Constructor for class com.lobsterman.JavaGrinders.Utilities.GrahamScan
 
GraphColorSchemes - Class in com.lobsterman.JavaGrinders
defines a number of pleasant color schemes
GraphColorSchemes(boolean) - Constructor for class com.lobsterman.JavaGrinders.GraphColorSchemes
 
Grid - Class in com.lobsterman.JavaGrinders
provides the interface for obtaining descriptive statistics from continuous variables.
Grid() - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with maximum values provided
Grid(double) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with maximum values provided
Grid(double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with minimum and maximum values provided
Grid(double, double, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with minimum and maximum values provided
Grid(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with minimum and maximum values provided
Grid(double, double, float, boolean) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with minimum and maximum values provided
Grid(double, double, float, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with minimum and maximum values provided
Grid(NumberVariable, float) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with minimum and maximum values provided
Grid(double, double, float, boolean, double) - Constructor for class com.lobsterman.JavaGrinders.Grid
standard constructor for the Grid class with minimum and maximum values provided
GridSpace3D - Class in com.lobsterman.JavaGrinders.spatial
provides the description of a 3D space for graphs
GridSpace3D() - Constructor for class com.lobsterman.JavaGrinders.spatial.GridSpace3D
empty constructor for the GridSpace3D class with coordinates provided
GridSpace3D(double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.GridSpace3D
constructor for the GridSpace3D class with x, y, z grids provided
GridSpace3D(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.GridSpace3D
standard constructor for the GridSpace3D class with coordinates provided
Group - Class in com.lobsterman.JavaGrinders.spatial
coordinates a group of animals
Group() - Constructor for class com.lobsterman.JavaGrinders.spatial.Group
Standard constructor for the Group class
Group(Constraint) - Constructor for class com.lobsterman.JavaGrinders.spatial.Group
Standard constructor for the Group class
Group(GridSpace3D) - Constructor for class com.lobsterman.JavaGrinders.spatial.Group
Standard constructor for the Group class
GroupAnalyzer - Class in com.lobsterman.JavaGrinders
Analyzer class - sets up a generic data analyzer, * it does not do much aside from planting the general roots for analyzers
GroupAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.GroupAnalyzer
Standard constructor
gRowHighlitedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
 
gRowSaveSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
 
gRowSelectedState - Variable in class com.lobsterman.JavaGrinders.VariableOrganizer
 
growToInclude(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the constraint that includes the new one as well.
GValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
GValueCorr - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
GValueProb - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 

H

HALF - Variable in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
handleAutoObjects() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
handles the nitty-gritty of the setup procedure
handleAutoReferenceBackground(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
handles the auto background settings
handleAutoReferenceBackgrounds() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
handles the auto background settings
handleLiveDeviceControl(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
handle the live device control based on the capture locations from the tracking jobs.
handlePrepareProcessing(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
prepare everything for tracking
handleQuit() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
handles a quit event
handleReference() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
installs the reference frame and displays it in the PathPlotter
handleSensorEvent(SensorChangeEvent) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
handles the incoming data from the sensor
handleShowSetup() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
shows the objects selected with the current settings
HardwareDevice - Class in com.lobsterman.JavaGrinders.control
 
HardwareDevice() - Constructor for class com.lobsterman.JavaGrinders.control.HardwareDevice
 
HardwareDeviceList - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
HardwareDeviceList() - Constructor for class com.lobsterman.JavaGrinders.control.HardwareDeviceList
 
hasAlpha(Image) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
returns whether the provided image has transparent pixels
hasColorLabel - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
hasDarkObject - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
hasDefaultColors - Variable in class com.lobsterman.JavaGrinders.Variable
 
hashCode() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns an integer hash code for this point.
hasLabel() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
how many labels are under the control of this VariableOrganizer
hasLightObject - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
height - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
height - Variable in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
HierarchyAnalyzer - Class in com.lobsterman.JavaGrinders
coordinates the analysis of contingency tables in an application.
HierarchyAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.HierarchyAnalyzer
Standard constructor using a VariableOrganizer and an InteractionTable
HierarchyAnalyzer(InteractionTable) - Constructor for class com.lobsterman.JavaGrinders.HierarchyAnalyzer
Standard constructor using a VariableOrganizer and an InteractionTable
HierarchyMatrixApplet - Class in com.lobsterman.JavaGrinders.Applets
manages the graphical user interface for the applet that implements analyses of a special case of crosstabulation frequency tables - a table of interactions between individual entities.
HierarchyMatrixApplet() - Constructor for class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
 
highliteSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
highlites the selected rows only
highliteSelectedRows(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
highlites all selected rows
HistogramPresenterPanel - Class in com.lobsterman.JavaGrinders.parametric
a presenter for a spatial map that is placed within a scrollpane within a frame.
HistogramPresenterPanel() - Constructor for class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
Standard constructor for the HistogramPresenter class
HodgesMeanN - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
HodgesMeanNProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
HodgesN - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
HodgesNProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
howManyPossiblePermutations() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
calculates the number of possible permutations
hsbVals - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
hsbVals_start - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
hueMaxValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
hueMinValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
hull() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamScan
 
hypoPs - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
hypot(double, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the sqrt(a^2 + b^2) without under/overflow
hypot(double, double, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the sqrt(a^2 + b^2 + c^2)

I

I2CDeviceManager - Class in com.lobsterman.JavaGrinders.control
 
I2CDeviceManager() - Constructor for class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
I2CHardwareType_Arduino - Static variable in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
I2CHardwareType_FTDI - Static variable in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
I2CHardwareType_LINKM - Static variable in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
I2CHardwareType_NONE - Static variable in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
identity(int, int) - Static method in class com.lobsterman.JavaGrinders.Jama.Matrix
Generate identity matrix
IDLE - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
IDMap - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
ImageEdit - Class in com.lobsterman.JavaGrinders.Tracker
 
ImageEdit(int, Shape, Color) - Constructor for class com.lobsterman.JavaGrinders.Tracker.ImageEdit
 
ImagePixelMat - Class in com.lobsterman.JavaGrinders.Tracker
a memory structure that holds information on a 2D array of pixels unfolded into a 1D array.
ImagePixelMat(Mat) - Constructor for class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
constructor for the ImagePixels class.
ImagePixelMat(Mat, boolean) - Constructor for class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
constructor for the ImagePixels class.
imgCounter - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
ImgProducer - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling an image generator
ImgProducer(File, int, int, long) - Constructor for class com.lobsterman.JavaGrinders.Tracker.ImgProducer
Constructor for the ImgProducer class.
includeZero() - Method in class com.lobsterman.JavaGrinders.Grid
returns whether the space contains the zero value
incrementCellValue(int, int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
increments a single cell for this matrix by one
init() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
“init” overrides “super.init()” and initializes the applet by: 1.
init() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
initializes the applet
initbgColor - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
initfgColor - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
initI2C() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
Initialize the I2C framework
initI2C_FTDI() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
initializes i2c for FTDI
initI2C_FTDI(int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
initializes i2c for FTDI
initI2C_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
initializes i2c for LinkM
initialCapturesDone - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
initialize() - Method in class com.lobsterman.JavaGrinders.control.Arduino
 
initialize() - Method in class com.lobsterman.JavaGrinders.control.PotentialGenerator
initialize the signal generator
initialize() - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
initialize the signal generator
initializeCanvas() - Method in class com.lobsterman.JavaGrinders.Presenter
initializes the canvas
initializeFromSettings() - Method in class com.lobsterman.JavaGrinders.control.CLIInterface
 
initializeFromSettings() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
initializeFromSettings() - Method in class com.lobsterman.JavaGrinders.control.NetworkInterface
 
initializeFromSettings() - Method in class com.lobsterman.JavaGrinders.control.OSCInterface
 
initializeOutput(File) - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
initialize the output framework
initializeOutput(File) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
set the time between produced images in ms.
initializeTracker(float, int, TrackingJobSettingsGroup, boolean, boolean, DeviceInterface, Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
Constructor for the Tracker class.
initializeTracker(TrackingJobSettingsGroup, boolean, boolean, DeviceInterface, Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
 
initializeTracker(float, int, TrackingJobSettingsGroup, boolean, boolean, DeviceInterface, Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
initializes the tracker
initializeTracker(float, int, TrackingJobSettingsGroup, boolean, boolean, boolean, DeviceInterface, Object) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
initializes the tracker
initializeTracker(float, int, TrackingJobSettingsGroup, boolean, boolean, DeviceInterface, Object) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
initializes the tracker
initializeTracker(float, int, TrackingJobSettingsGroup, boolean, boolean, boolean, DeviceInterface, Object) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
initializes the tracker
initializeTrackingCycler(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
initializes the timing framework, either via a ProcRunner or a callback
initializeUSB() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
 
initUSB() - Static method in class com.lobsterman.JavaGrinders.control.USBDeviceManager
initialize USB services
initUVC() - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
Initialize the UVC framework
insetH - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
 
insetV - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
 
installConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
installs a spatial constraint for the variable without checking with the VariableOrganizer
InstrumentEngine - Class in com.lobsterman.JavaGrinders.Instruments
root class for all kinds of objects that visualize data
InstrumentEngine(String, double) - Constructor for class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
Basic constructor for the InstrumentEngine class
InstrumentEngine(String, double, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
Basic constructor for the InstrumentEngine class
InstrumentEngine(String, double, DeviceInterface, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
Standard constructor for the InstrumentEngine class
IntegerVariable - Class in com.lobsterman.JavaGrinders
handles a variable of Doubles that represent ordinal data.
IntegerVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.IntegerVariable
Standard constructor for the IntegerVariable class using a VariableOrganizer
intensity - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
 
IntensityUse - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
InteractionTable - Class in com.lobsterman.JavaGrinders
contains a crosstabulation table of interactions between individuals and performs a variety of statistics on it, including dominance measures, reciprocity, etc.
InteractionTable(int) - Constructor for class com.lobsterman.JavaGrinders.InteractionTable
standard constructor for the InteractionTable class
InteractionTable(ContingencyTable) - Constructor for class com.lobsterman.JavaGrinders.InteractionTable
standard constructor for the InteractionTable class
InteractionTable(int, double[][]) - Constructor for class com.lobsterman.JavaGrinders.InteractionTable
standard constructor for the InteractionTable class
intersect(SGPolygon) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
performs an analysis of principal axis orientations
intersects(Rectangle2D, Rectangle2D) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Checks, whether the given rectangle1 fully contains rectangle 2 (even if rectangle 2 has a height or width of zero!).
intsPerRow - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
IntToARGBBytes(int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Assembles individual RGB byes from an int color
IntToARGBInts(int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Assembles a RGB color from individual color values
intToByteArray(int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Utility method to convert an int into bytes, padded to two characters.
intToHex(int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Utility method to convert an int into hex, padded to two characters.
invalidDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
descriptive stats need to be updated
invalidDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
descriptive statistics need to be updated
invalidTrial() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
inverse() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Matrix inverse or pseudoinverse
invertSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
invert select rows
invertSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
invert select rows
invertTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
inverts the table with rows to colums and colums to rows
invertTable() - Method in class com.lobsterman.JavaGrinders.DataTable
inverts the table with rows to columns and columns to rows
is32Bit() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
is3D - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
is64Bit() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isActive - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
isAngleType() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type ANGLES
isAperture_Auto(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
isApplyFilterBeforeDetection() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
returns whether an unsharpen filter should be applied to the frame prior to analysis
isBetween(SpatialVector, SpatialVector, SpatialVector) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns whether the last vector is between the first two
isBetween(double, double, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns whether the last number is between the first two numbers
isBinary(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
returns whether the provided image has binary information
isCCW() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
isColor(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
returns whether the provided image has color information
isContinuousType() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type CONTINUOUS
isControlDeviceOperator() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
is a controller?
isDataInRunning - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
isDataLoggingReady - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
isDateTimeFormat() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type DATETIME
isEven(int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns whether the integer is an even number
isFocus_Auto(Pointer<UvcLibrary.uvc_device_handle>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
isFullRank() - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
Is the matrix full rank?
isGray(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
returns whether the provided image has grayscale information
isGrayScale - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
isHPUnix() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isIn(SpatialVector) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
returns whether the provided capture is in the hot space
isIn(Point2D) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
returns whether the provided capture is in the hot space
isIndeterminate() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
isInteracting - Variable in class com.lobsterman.JavaGrinders.socialModel.BehaviorCaptureData
 
isLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
checks whether the CaptureVariable contains latitude/longitude coordinates
isLatLong() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
checks whether the CaptureVariable contains latitude/longitude coordinates
isLinux() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isLocationType() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type LOCATIONS
isLocked() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether a variable is locked for further selections, modifications, etc.
isLowerWay(int, int) - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
isMacOSX() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isMatchingMatrix(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
does this matrix have the same values as the provided one?
isNominalType() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type NOMINAL
isNonsingular() - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
Is the matrix nonsingular?
isNumberFormat() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type NUMBER
isnWay(int, int) - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
isOdd(int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns whether the integer is an even number
isOn - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 
isOnBorder(Point2D) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns whether a Point is on the boundary of the polygon
isOrdinalType() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type ORDINAL
isOther() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isPrimeUse() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns whether the TargetCaptureData record was found on its main pass through the image
isRaspbian() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isRatiometric - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
 
isRunning - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProcRunner
 
isSensorDeviceOperator() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
is a sensor?
isSolaris() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isSorted - Variable in class com.lobsterman.JavaGrinders.Variable
 
isSPD() - Method in class com.lobsterman.JavaGrinders.Jama.CholeskyDecomposition
Is the matrix symmetric and positive definite?
isSquare() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
is matrix square?
isSquare - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
isStringFormat() - Method in class com.lobsterman.JavaGrinders.Variable
returns whether the variable is of type STRING
isSunOS() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isUVCInitialized - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
isValidControlHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns whether the device interface is able to control output
isValidRowRange(int) - Method in class com.lobsterman.JavaGrinders.Variable
checks whether a given row is within a valid range
isValidSensorHardware() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns whether the device interface is able to control output
isWindows() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
isXVariable() - Method in class com.lobsterman.JavaGrinders.Variable
is the variable selected as an independent variable
isYVariable() - Method in class com.lobsterman.JavaGrinders.Variable
is the variable selected as a dependent variable
itemsAsDistanceMatrix(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a proximity matrix for the variables in the variableorganizer which have been selected as dependent variables (i.e., VariableDesignRole.Y)
itemStateChanged(ItemEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
 
iterated - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
iterated - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
itsAnalysisRectBottom - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsAnalysisRectOrigin - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsAnalysisRectRight - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsBars - Variable in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
itsBoundPoly - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsBounds - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
 
itsBuffImage - Variable in class com.lobsterman.JavaGrinders.Tracker.RHComponent
 
itsCallBack - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
itsCanvas - Variable in class com.lobsterman.JavaGrinders.Presenter
 
itsCDescriptives - Variable in class com.lobsterman.JavaGrinders.spatial.AngleVariable
 
itsChannel - Variable in class com.lobsterman.JavaGrinders.control.SignalGenerator
 
itsColorPixelBytes - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
 
itsColors - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsColorThreshold - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsControlDesign - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsDataRate - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
 
itsDataSpace - Variable in class com.lobsterman.JavaGrinders.spatial.MapDimensions
 
itsDefaultCoordinateMap - Variable in class com.lobsterman.JavaGrinders.Presenter
 
itsDescriptives - Variable in class com.lobsterman.JavaGrinders.Variable
 
itsDesignType - Variable in class com.lobsterman.JavaGrinders.control.ControlDesignType
 
itsDevH - Variable in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
 
itsDeviceController - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsDeviceInterface - Variable in class com.lobsterman.JavaGrinders.control.DeviceOperator
 
itsDeviceInterface - Variable in class com.lobsterman.JavaGrinders.control.SignalGenerator
 
itsDeviceInterface - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsDevicePosCounter - Variable in class com.lobsterman.JavaGrinders.control.DeviceOperator
 
itsDeviceTimer - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsDeviceType - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsDirectionRad - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsDurationTraceTime - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsEngine - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsExperiment - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
itsFileName - Variable in class com.lobsterman.JavaGrinders.DataFileParser
 
itsFilePath - Variable in class com.lobsterman.JavaGrinders.DataFileParser
 
itsFillColor - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
itsFontSize - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
itsFormula - Variable in class com.lobsterman.JavaGrinders.Variable
 
itsFps - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
itsFrameCount - Variable in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
 
itsFrameDuration - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
itsFramesPerSec - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsFrontColor - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
itsFTDIModel - Variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
itsGrayPixelBytes - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
 
itsGrid - Variable in class com.lobsterman.JavaGrinders.Grid
 
itsGroup - Variable in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
itsHardware - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsHeight - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
itsHost - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
 
itsHost - Variable in class com.lobsterman.JavaGrinders.control.NetworkInterface
 
itsHostAddr - Variable in class com.lobsterman.JavaGrinders.control.OSCInterface
 
itsHypothesisPs - Variable in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
itsI2CHardwareType - Static variable in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
 
itsIDs - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
itsImage - Variable in class com.lobsterman.JavaGrinders.Tracker.RHComponent
 
itsImage_V - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
itsIndex - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsInstrumentPanel - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsLabelBGRColorsi - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsLabelHSVColorsf - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsLineColor - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
itsLineColor - Variable in class com.lobsterman.JavaGrinders.Variable
 
itsLocationColor - Variable in class com.lobsterman.JavaGrinders.Variable
 
itsMat - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
 
itsMDescriptives - Variable in class com.lobsterman.JavaGrinders.spatial.MoveVariable
 
itsMilliSecWait - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
itsMovGen - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsDialog
 
itsMovieFileName - Variable in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
 
itsMovieFileReference - Variable in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
 
itsNCols - Variable in class com.lobsterman.JavaGrinders.DataTablePresenter
 
itsNDescriptives - Variable in class com.lobsterman.JavaGrinders.NumberVariable
 
itsNRows - Variable in class com.lobsterman.JavaGrinders.DataTablePresenter
 
itsOBBHalfPoint - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsObjectLength - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsObjectSize - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsObjectWidth - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsOffVoltage - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsOnVoltage - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsOrientedBoundBox - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsOrientedPoints - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsOutputV - Variable in class com.lobsterman.JavaGrinders.control.SignalGenerator
 
itsPass - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
 
itsPathPlotter - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
itsPhidgetModel - Variable in class com.lobsterman.JavaGrinders.control.PhidgetInterface
 
itsPixelThreshold - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsPlotterPanel - Variable in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
itsPort - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
 
itsPort - Variable in class com.lobsterman.JavaGrinders.control.NetworkInterface
 
itsPort - Variable in class com.lobsterman.JavaGrinders.control.OSCInterface
 
itsPreferedfps - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
itsPresenterPanel - Variable in class com.lobsterman.JavaGrinders.Presenter
 
itsPreviousMoveVector - Variable in class com.lobsterman.JavaGrinders.spatial.MoveVector
 
itsPreviousTCDs - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsRampTimer - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
itsRampType - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
itsReader - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsRecordProc - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsRecProc - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProcRunner
 
itsRefreshRate - Variable in class com.lobsterman.JavaGrinders.control.SignalGenerator
 
itsRelOrigin - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsRunner - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsRunTime - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsSamplesPerSec - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsSDescriptives - Variable in class com.lobsterman.JavaGrinders.spatial.VectorVariable
 
itsSecsToRun - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsSerNum - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsSettings - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsSpeed - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
itsStartTime - Variable in class com.lobsterman.JavaGrinders.control.SignalGenerator
 
itsStartTraceTime - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsStreamControl - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsStringer - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
itsSurroundColor - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
itsTable - Variable in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
 
itsTable - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
itsTargetDataList - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
itsTDescriptives - Variable in class com.lobsterman.JavaGrinders.spatial.TimeVariable
 
itsTDescriptor - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsTime - Variable in class com.lobsterman.JavaGrinders.spatial.Capture
 
itsTimeBetweenFrames - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsTimerRowCounter - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsTimes - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsTimeStamp - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
itsTotalSum - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
itsTracker - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
itsTracker - Variable in class com.lobsterman.JavaGrinders.Tracker.RHComponent
 
itsTrackingGroup - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsTrackingType - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsTriggerMode - Variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
itsType - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsUSBDevice - Static variable in class com.lobsterman.JavaGrinders.control.USBDeviceManager
 
itsUser - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
 
itsUVCCtx - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
itsUVCDeviceHandle - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsUVCDeviceManager - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsValues - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
 
itsValues - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
 
itsVideoC - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
itsVideoCapture - Variable in class com.lobsterman.JavaGrinders.Tracker.OpenCVRecordProc
 
itsVideoCapture - Variable in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
 
itsView - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
itsVisGen - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.ColorsDialog
 
itsVisualSpace - Variable in class com.lobsterman.JavaGrinders.spatial.MapDimensions
 
itsWidth - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
itsWriter - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
itsWriter - Variable in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
 
itsXs - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsXYMapDimensions - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
itsXYZMapDimensions - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
itsXYZMaxCorner - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsXYZMinCorner - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
itsXZMapDimensions - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
itsYs - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
itsYZMapDimensions - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
itsZs - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 

J

JavaGrinders - Class in com.lobsterman.JavaGrinders
holds info for version numbers etc.
JavaGrinders() - Constructor for class com.lobsterman.JavaGrinders.JavaGrinders
 
JavaGrinders.OS - Enum in com.lobsterman.JavaGrinders
 
JavaGrinders_Control - Class in com.lobsterman.JavaGrinders.control
This class keeps track of version numbers and build levels
JavaGrinders_Control() - Constructor for class com.lobsterman.JavaGrinders.control.JavaGrinders_Control
 
JavaGrinders_Jama - Class in com.lobsterman.JavaGrinders.Jama
This class keeps track of version numbers and build levels
JavaGrinders_Jama() - Constructor for class com.lobsterman.JavaGrinders.Jama.JavaGrinders_Jama
 
JavaGrinders_Spatial - Class in com.lobsterman.JavaGrinders.spatial
This class keeps track of version numbers and build levels
JavaGrinders_Spatial() - Constructor for class com.lobsterman.JavaGrinders.spatial.JavaGrinders_Spatial
 
JavaGrinders_Tracker - Class in com.lobsterman.JavaGrinders.Tracker
This class keeps track of version numbers and build levels
JavaGrinders_Tracker() - Constructor for class com.lobsterman.JavaGrinders.Tracker.JavaGrinders_Tracker
 
justTurnedOn - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 

K

kByteLength - Static variable in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
 
kChannelID - Static variable in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
 
Kendall - Variable in class com.lobsterman.JavaGrinders.LinearityResults
 
KendallTauValue - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
kEuclidian - Static variable in class com.lobsterman.JavaGrinders.Variable
 
keyDown(char) - Method in class com.lobsterman.JavaGrinders.Applets.SpreadSheetInput
handles a single character for the inputfield
keyPressed(KeyEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
keyPressed(KeyEvent) - Method in class com.lobsterman.JavaGrinders.control.Experiment
handle keyPressed event
keyReleased(KeyEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
keyReleased(KeyEvent) - Method in class com.lobsterman.JavaGrinders.control.Experiment
handle keyReleased event
keyTyped(KeyEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
keyTyped(KeyEvent) - Method in class com.lobsterman.JavaGrinders.control.Experiment
handle keyTyped event
kFrameLook - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
kGower - Static variable in class com.lobsterman.JavaGrinders.Variable
 
kHeight - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
kHeight - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
kIsRatiometric - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
kIsRatiometric - Static variable in class com.lobsterman.JavaGrinders.control.PhidgetInterface
 
kJaccard - Static variable in class com.lobsterman.JavaGrinders.Variable
 
kManhattan - Static variable in class com.lobsterman.JavaGrinders.Variable
 
kMemoryRegister - Static variable in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
 
kMenuBarHeight - Static variable in class com.lobsterman.JavaGrinders.Presenter
 
kNChannels - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
kOriginLook - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
kPaspart - Variable in class com.lobsterman.JavaGrinders.Presenter
 
kPixelThreshold - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
kRelativeSize - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
kRelativeSize - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
kSamplesPerSec - Static variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
kSamplesPerSec - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
kSamplesPerSec - Static variable in class com.lobsterman.JavaGrinders.control.LinkMInterface
 
kSamplesPerSec - Static variable in class com.lobsterman.JavaGrinders.control.PhidgetInterface
 
kSensorChangeTrigger - Static variable in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
 
kSensorChangeTrigger - Static variable in class com.lobsterman.JavaGrinders.control.PhidgetInterface
 
kSquEuclidian - Static variable in class com.lobsterman.JavaGrinders.Variable
 
Kurtosis - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
kWidth - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
kWidth - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
kWindowSize - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
 
kWindowSize - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
 

L

label - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
LABEL - Static variable in class com.lobsterman.JavaGrinders.VariableDesignRole
 
labelBars(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
labels the bins
labelGap - Variable in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
labelGap - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
labelHighX(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
plots the high X axis label
labelHighY(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
plots the high X axis label
labelXGridItem(Graphics2D, String, int, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
labels the X axis grid
labelYGridItem(Graphics2D, String, int, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
labels the Y axis grid
Landau - Variable in class com.lobsterman.JavaGrinders.LinearityResults
 
lastSampleTime - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
lastValue - Variable in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
 
LED_aqua - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_blue - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_gray - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_green - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_Inactive - Static variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_Off - Static variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_On - Static variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_orange - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_purple - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_red - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_unaqua - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_unblue - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_ungray - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_ungreen - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_unorange - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_unpurple - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_unred - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_Unused - Static variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_unyellow - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LED_yellow - Variable in class com.lobsterman.JavaGrinders.control.LEDButton
 
LEDButton - Class in com.lobsterman.JavaGrinders.control
A virtual implementation of an LED light
LEDButton(String) - Constructor for class com.lobsterman.JavaGrinders.control.LEDButton
 
LEFT - Static variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
LEFT - Static variable in class com.lobsterman.JavaGrinders.spatial.View
 
LibUVCRecordProc - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the analysis of video frames
LibUVCRecordProc() - Constructor for class com.lobsterman.JavaGrinders.Tracker.LibUVCRecordProc
 
LibUVCTracker - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling a video tracking application
LibUVCTracker(String, int, UvcLibrary.uvc_frame_format, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
Constructor for the Tracker class.
LibUVCTracker(int, UvcLibrary.uvc_frame_format, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
Constructor for the Tracker class.
LIGHTOBJECT - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
LinearityResults - Class in com.lobsterman.JavaGrinders
holds a set of results obtained for an analysis of linearity applied to a dominance table
LinearityResults() - Constructor for class com.lobsterman.JavaGrinders.LinearityResults
 
LinkM_RH - Class in com.lobsterman.JavaGrinders.control
 
LinkM_RH() - Constructor for class com.lobsterman.JavaGrinders.control.LinkM_RH
 
LinkMInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
LinkMInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.LinkMInterface
standard constructor for the DeviceInterface class
LinkMInterface(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.LinkMInterface
standard constructor for the DeviceInterface class
list() - Method in class com.lobsterman.JavaGrinders.BasicData
 
list() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
list the record
list() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
lists the interface
list() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
lists the info
list() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
lists the info
list() - Method in class com.lobsterman.JavaGrinders.Descriptives
reports the descriptives for the variable
list(Double) - Method in class com.lobsterman.JavaGrinders.Descriptives
reports the appropriate descriptives for comparing the variable to an external value
list() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
list() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
lists the table
list(boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
lists the table
list(Double) - Method in class com.lobsterman.JavaGrinders.NumberDescriptives
reports the appropriate descriptives for comparing the variable to an external value
list() - Method in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
reports the current values of the variables
list() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
reports the current values of the variables
list() - Method in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
reports the current values of the variables
list() - Method in class com.lobsterman.JavaGrinders.parametric.tTestResults
reports the current values of the variables
list(Double) - Method in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
reports the circular descriptives
list(Double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
lists the descriptives
list(Double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
lists the descriptives
list() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
lists the SpatialVector as a String
list(Double) - Method in class com.lobsterman.JavaGrinders.spatial.TimeDescriptives
lists the descriptives
list() - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
lists the info for the pixel
list() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
lists the info of the polygon
list() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
lists the info for the pixel
list() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
lists the info for the pixel
list() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
returns the TrackingJobSetting as a String
listAD7147Registers(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
cycle and report from all the registers
listAD7151Registers(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
cycle and report from all the registers
listAll() - Method in class com.lobsterman.JavaGrinders.Descriptives
reports the complete set of descriptives
listAll(Double) - Method in class com.lobsterman.JavaGrinders.Descriptives
reports the complete set of descriptives for comparing the variable to an external value
listAllVersions() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
listANOVATable() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
lists the ANOVA table
listANOVATableBasic() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
lists the ANOVA table
listANOVATableDetail() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
lists the ANOVA table with details for the model terms
listAppletInfo() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
lists info for the applet
listAsPolygonConstructor() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
lists the coordinates of the polygon as coordinates of the object perimeter
listAutoExtractedInfo(int) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
describes what was extracted from the dataFileParser
listBasics() - Method in class com.lobsterman.JavaGrinders.Descriptives
reports the basic descriptives for the variable
listBasics() - Method in class com.lobsterman.JavaGrinders.NumberDescriptives
reports the current values of the variables
listByteArray(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
listByteArray(short) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
listByteArray(int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
listCircularDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the descriptive statistics for the angles of the moves using the currently selected set of rows
listCircularDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
lists the speed statistics for the variable using the currently selected set of rows
listColorPixel(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
lists the color value of the pixel value as RGB bytes
listColorPixels() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
Lists all color pixel values
listColorPixels(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
Lists the pixel byte values within a given area of the ImagePixels
listContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
performs a Test of Independence on the ContingencyTable/ and reports the results as statistics for X2 and loglikelihood ratio.
listContingencyTableResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
does the test and returns its results
listCorrelationResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
listCorrMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the correlation matrix for all dependent variables.
listData() - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
turns the record into a string
listDebug - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
listDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
lists the descriptive statistics for the variable using the currently selected set of rows
listDescriptives(Double) - Method in class com.lobsterman.JavaGrinders.Variable
lists the descriptive statistics for the variable using the currently selected set of rows
listDescriptives() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
list descriptives for all Y variables of the VariableOrganizer
listDetail - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
listDeviceInterface() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
redirects the device listing to the Arduino
listDeviceInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
lists info for the device
listDeviceInterface() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
lists info for the device
listDeviceInterface() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
lists info for the device
listDeviceInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
checks for all available serial ports
listDeviceInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
lists info for the device
listDeviceInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
checks for all available serial ports
listDeviceOperators() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
lists the device controllers
listDevices() - Method in class com.lobsterman.JavaGrinders.control.HardwareDeviceList
 
listDistanceMatrix(int) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists a matrix of distances between all valid (i.e., selected and non-missing) locations
listEquation() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
lists the Regression formula for the line
listExpectedTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
reports the expected values for the ContingencyTable
listExpectedTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
lists a matrix of expected values
listF() - Method in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
reports the comparison fo the statisic with the F-distribution
listFractalDimension() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the fractal dimension for the variable using the currently selected set of rows
listFractalDimension(double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the fractal dimension for the variable using the currently selected set of rows
listFrameDescriptor(Pointer<UvcLibrary.uvc_device_handle>, int, int) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
listFTDIDevice(Device) - Static method in class com.lobsterman.JavaGrinders.control.FTDIDeviceManager
lists a specific connected FTDI device
listFTDIDevices() - Static method in class com.lobsterman.JavaGrinders.control.FTDIDeviceManager
lists connected FTDI devices
listFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
reports the Freeman-Tukey deviates for the ContingencyTable
listFTukeyDeviates() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
lists Freeman-Tukey deviates for a cell wise examination of the table
listGoodnessOfFitResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
reports the results for a replicated goodness of fit test with external hypothesis probabilities
listGrayByteArray(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
List the pixel values of a BufferedImage
listGrayPixel(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
lists the grayscale value of the pixel
listGrayPixels() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
Lists all gray scale pixel values
listGrayPixels(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
Lists the pixel byte values within a given area of the ImagePixels
listGroupDescriptiveItem() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
lists the descriptives for the groups identified by X
listGroupDescriptives(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.Analyzer
lists the descriptive statistics for the groups identified by X
listGroupDescriptives(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
lists the descriptive statistics for the groups identified by X
listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
lists the descriptives for the groups identified by X
listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
lists the descriptives for the groups identified by X
listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the descriptives for the groups identified by X
listGroupDescriptives(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
lists the descriptives for the groups identified by X
listGroupDescriptivesNoDia(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
lists the descriptives for the groups identified by X
listGroupDescriptiveTitles() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
lists the descriptives for the groups identified by X
listI2CDevice(int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
lists i2c device
listIDs() - Method in class com.lobsterman.JavaGrinders.Descriptives
lists the frequencies for all instances of the variable using the currently selected set of rows
listIDs(int) - Method in class com.lobsterman.JavaGrinders.Descriptives
lists the frequencies for different instances of the variable using the currently selected set of rows up to the specified number of maxInstances
listinFileInfo() - Method in class com.lobsterman.JavaGrinders.DataFileParser
report some info on the content read from the text file
listinFileInfo(int, int) - Method in class com.lobsterman.JavaGrinders.DataFileParser
report some info on the content read from the text file
listInfo() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
listInfo() - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
lists descriptive info on the ImagePixels
listIntersectionsWithCircle(SpatialVector, double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the point of intersection of this move with a circle of a given radius
listLibraryVersion() - Static method in class com.lobsterman.JavaGrinders.control.Arduino
list the library version
listLinearityResults() - Method in class com.lobsterman.JavaGrinders.DominanceTable
lists results from a Test for Linearity.
listLinearityResults() - Method in class com.lobsterman.JavaGrinders.InteractionTable
lists results from a Test for Linearity.
listMantelZResults(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
lists Mantel's Z for the table
listModelDesign() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
lists the variables and their design roles for the analysis
listMoveDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the descriptive statistics for the moves using the currently selected set of rows
listMoveDescriptives(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the descriptive statistics for the moves using the currently selected set of rows
listMoveDescriptives(boolean, double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
lists the descriptive statistics for the moves using the currently selected set of rows
listMultLinRegressionResults(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
listOrdinalRanks() - Method in class com.lobsterman.JavaGrinders.DominanceTable
report ordinal ranks for each individual
listOS() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
listParameterEstimates() - Method in class com.lobsterman.JavaGrinders.parametric.ANOVAResults
lists nothing for parameter estimates
listParameterEstimates() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
lists nothing for parameter estimates
listPeaks(ArrayList<Integer>) - Method in class com.lobsterman.JavaGrinders.NumberVariable
from Tom O'Haver's toh@umd.edu great tutorial at
listPoints() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
lists the coordinates of the polygon
listPolyList(List<SGPolygon>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
lists the TargetCaptureData
listPolyListLine(List<SGPolygon>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
lists the TargetCaptureData
listPorts() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
listRanks() - Method in class com.lobsterman.JavaGrinders.InteractionTable
list ranks for each individual
listRaoSpacingCriticalValueTable() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
list the critical values of the Rao spacing statistic
listRegisters(int, byte, int) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
gets the sensor value
listRegisters(byte, int) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
cycle and report from all the registers
listRegressionResults(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
listRegressionResults(NumberVariable, int) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
listRegressionResults(NumberVariable, int, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
fills the regression statistics for the variable with control over the intercept
listReplicatedGoodnessOfFitResults(Variable) - Method in class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
reports a replicated goodness of fit test for the ContingencyTable
listResults() - Method in class com.lobsterman.JavaGrinders.ContTableResults
does the test and returns its results
listResults() - Method in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
does the test and returns its results
listRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
lists data value for a single row
listRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists data values for a single row
listRowOrder(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
lists data values for a range of rows
listRows() - Method in class com.lobsterman.JavaGrinders.Variable
lists all data values in the variable
listRows(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
lists all data values in the variable
listRows(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
lists data values for a range of rows regardless of selection
listRows(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
lists data values for a range of rows
listRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists all data values in the variable
listRows(boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists all data values in the variable
listRows(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists data values for a range of rows
listRuntimeMemory() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
listSegments() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
lists the segments of the polygon
listSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
lists data values for all selected rows in the variable
listSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists data values for all selected rows in the variable
listSelectState() - Method in class com.lobsterman.JavaGrinders.Variable
lists for each row whether it is selected or not
listSelectState(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
lists for a range of rows whether it is selected or not
listSelectState() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists for each row whether it is selected or not
listSelectState(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists for a range of rows whether it is selected or not
listSigStars(double) - Method in class com.lobsterman.JavaGrinders.Descriptives
adds stars to indicate levels of significance
listSSCPMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the variance/covariance matrix for all dependent variables.
listSummaryFit() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
lists the Regression formula for the line
listSystemInformation() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
listt() - Method in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
reports the comparison fo the statisic with the F-distribution
listTable() - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
reports the ContingencyTable
listTable() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
lists the table
listTable(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
lists the table
listTargetCaptureDataList(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
lists the TargetCaptureData
listTargetCaptureDataListLine(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
lists the TargetCaptureData
listTargetCaptureDataListPolys(List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
lists the polygons of the TargetCaptureData
listTargetDataList() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
list of found targets
listTauKrResults() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
lists the Tau Kr for the table
listTetradAnalysis(Variable, Variable) - Method in class com.lobsterman.JavaGrinders.GroupAnalyzer
performs an analysis of the direction of three consecutive dyadic * interactions following Chase's jig-saw puzzle approach.
listToDebug() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
lists the coordinates of the polygon as coordinates of the object perimeter
listTrackingJobSettings() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
lists the TrackingJobSettings in this group
listUSBDeviceInfoComplete(UsbDevice) - Static method in class com.lobsterman.JavaGrinders.control.USBDeviceManager
Processes the specified USB device.
listUSBDevices() - Static method in class com.lobsterman.JavaGrinders.control.USBDeviceManager
list USB devices
listUSBTree() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
lists the USB devices
listUSBTree(boolean) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
lists the USB devices
listUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
lists data values for all selected rows in the variable
listUVCCameraInfo(Pointer<UvcLibrary.uvc_device>, boolean) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
listUVCCameraInfoBasic(Pointer<UvcLibrary.uvc_device>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
listUVCCameraStreamFormats(Pointer<UvcLibrary.uvc_device>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
listValues - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
listValues() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
lists the SpatialVector as a String
listVarCovarMatrix(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
lists the variance/covariance matrix for all dependent variables.
listVariables() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
lists the Variables registered with the VariableOrganizer
listVersion() - Static method in class com.lobsterman.JavaGrinders.control.JavaGrinders_Control
 
listVersion() - Static method in class com.lobsterman.JavaGrinders.Jama.JavaGrinders_Jama
 
listVersion() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
listVersion() - Static method in class com.lobsterman.JavaGrinders.spatial.JavaGrinders_Spatial
 
listVersion() - Static method in class com.lobsterman.JavaGrinders.Tracker.JavaGrinders_Tracker
lists build and version of the Tracker part of the JavaGrinders library
listWarnings - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
LIVE - Static variable in class com.lobsterman.JavaGrinders.control.ControlDesignType
 
lnFactorial(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Returns natural logarithm of factorial using gamma function.
lnfbeta(double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
returns the beta
lnfgamma(double) - Method in class com.lobsterman.JavaGrinders.Utilities.ChiSquare
 
lnGamma(double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Returns natural logarithm of gamma function.
loadLibraryFromJar(String) - Static method in class com.lobsterman.JavaGrinders.Utilities.NativeUtils
Loads library from current JAR archive The file from JAR is copied into system temporary directory and then loaded.
loadOpenCV() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
tries to preload the opencv native library from its usual installation directory
loadRxTx() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
tries to preload the rxtx native library from the jar
locateColorLabel(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
finds the pixel with the color value closest to the provided color
locateColorRangeContours(int[], int[]) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
finds the color contours
locateObjectPolys(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
traces the outline of an object
locateObjectPolys(TrackingJobSetting) - Method in interface com.lobsterman.JavaGrinders.Tracker.ObjectTracer
 
locateTargets(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
finds the center location of the darkest/lightest object
locateTargets(TrackingJobSetting) - Method in interface com.lobsterman.JavaGrinders.Tracker.ObjectTracer
 
LOCATIONS - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
logFileName - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
loggerIsRunning - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
loggingBox - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
loggingDestLabel - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
loop() - Method in class com.lobsterman.JavaGrinders.control.Arduino
loop the device
lowXIsZero - Variable in class com.lobsterman.JavaGrinders.spatial.MapDimensions
 
lowYIsZero - Variable in class com.lobsterman.JavaGrinders.spatial.MapDimensions
 
lowZIsZero - Variable in class com.lobsterman.JavaGrinders.spatial.MapDimensions
 
lu() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
LU Decomposition
LUDecomposition - Class in com.lobsterman.JavaGrinders.Jama
LU Decomposition.
LUDecomposition(Matrix) - Constructor for class com.lobsterman.JavaGrinders.Jama.LUDecomposition
LU Decomposition

M

main(String[]) - Static method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
Code creates an application that displays and runs the SquadronGunner Class.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
Code creates an application that displays and runs the SquadronGunner Class.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.Arduino
main function
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.CLIInterface
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.DeviceInterface
Main method
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.FTDIDeviceManager
Main method Command-line arguments (Ignored)
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
Main method
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.LinkM_RH
Main method
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.LinkMInterface
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.NetworkInterface
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.OSCInterface
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.SineWaveGenerator
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.USBDeviceManager
Main method.
main(String[]) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
Main method
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
main routine
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Instruments.Oscilloscope
main routine
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Instruments.PhidgettEngine
main routine
main(String[]) - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
main routine
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Presenter
main routine
main(String[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImshow
main method
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Tracker.ImgProducer
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
the main function of the class
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
the main function of the class
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
the main function of the class
main(String[]) - Static method in class com.lobsterman.JavaGrinders.Utilities.GrahamScan
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.VisualStimulus.ColorsDialog
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsDialog
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
main(String[]) - Static method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
majorVersion - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
makeAutoBackgrounds - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
makeAutoObjects - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
makeBufferedImage(int, int, boolean) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHOpenCVUtils
converts an image from OpenCV to java space
makeBufferedImage(Mat) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHOpenCVUtils
converts an image from OpenCV to java space
makeCanvasPanel() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
sets the panel for the presenter
makeCanvasPanel() - Method in class com.lobsterman.JavaGrinders.Presenter
makes the main canvas panel
makeColorOptions() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.ColorsDialog
 
makeColorRangeMask(int[], int[]) - Method in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
assembles a binary bit image with pixels of 1 if they are within the color range and 0 if they are not.
makeControlDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
makes and adds a controller to the interface
makeControlDialog() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
makeControlDialog() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
makeControlPanel() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
creates the control Panel
makeDataPanel() - Method in class com.lobsterman.JavaGrinders.Instruments.Oscilloscope
creates the Panel for presenting the active data
makeDefaultRecordProc() - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
makes a default frame callback
makeDefaultRecordProc() - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
makes a new default RecordProc
makeDefaultRecordProc() - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
makes a new default RecordProc
makeDefaultRecordProc() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
makes a new default RecordProc
makeDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
makes and adds an operator to the interface
makeDirectionRad(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the direction of the object in radians
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
looks for and initializes the Arduino
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.CLIInterface
looks for and initializes the Terminal controller
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
initializes empty interface for the device controller
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
makes the interface for a FTDI D2XX port
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
makes the interface to a Phidget
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.NetworkInterface
looks for and initializes the Terminal controller
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.OSCInterface
looks for and initializes the Terminal controller
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
looks for and initializes the interfacekit for the relay controller
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
looks for and initializes the interfacekit for the relay controller
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
makes the interface for a Phidget
makeHardwareInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
looks for and initializes the interfacekit for the relay controller
makeImagePixels() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
makes the ImagePixels from the video source
makeInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
initializes empty interface for the device controller
makeInterface() - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
makes the interface to a Phidget
makeNewDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberVariable
create a new set of descriptives for the variable the object
makeNewDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
create a new set of descriptives for the variable the object
makeNewDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
create a new set of descriptives for the variable
makeNewDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.TimeVariable
create a new set of descriptives for the variable the object
makeNewDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
create a new set of descriptives for the variable the object
makeNewDescriptives() - Method in class com.lobsterman.JavaGrinders.Variable
create a new set of descriptives for the variable the object
makePathPlotterComponent(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
makes a path plotting component for the tracking application, either a live video display or a movie player
makePresenterPanel() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
creates the Panel for presenting the active data
makePresenterPanel() - Method in class com.lobsterman.JavaGrinders.Presenter
creates the Panel for presenting the active data
makeSensorDeviceOperator(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
makes and adds a sensor to the interface
makeSensorInterface() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
makes and sets a sensor interface
makeSensorInterface() - Method in class com.lobsterman.JavaGrinders.Instruments.PhidgettEngine
makes and sets a sensor interface
makeShapeFromPoints(Point, Point, int) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
creates an rectangular shape from two corner Points
makeSineWave(int, double) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
makes a sine wave
makeSubtractedDHistogram - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
makeSubtractedLHistogram - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
makeTableSubSet(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Variable
returns a subset of row data values for the ContingencyTable as a ContingencyTable.
makeTargetDataList(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
collate a list of found targets
makeVideoComponent(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
makes a video component for the tracking application, either a live video display or a movie player
MANHATTAN - Static variable in class com.lobsterman.JavaGrinders.DataTable
 
MapDimensions - Class in com.lobsterman.JavaGrinders.spatial
provides the interface for obtaining descriptive statistics from continuous variables.
MapDimensions(double, double, double, double, double, double, double, boolean, boolean, boolean) - Constructor for class com.lobsterman.JavaGrinders.spatial.MapDimensions
standard constructor for the MapDimensions class with coordinates provided
MapDimensions(double, double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.MapDimensions
standard constructor for the MapDimensions class with coordinates provided
MapDimensions(GridSpace3D, double, boolean, boolean, boolean) - Constructor for class com.lobsterman.JavaGrinders.spatial.MapDimensions
standard constructor for the MapDimensions class with coordinates provided
MapDimensions(GridSpace3D, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.MapDimensions
standard constructor for the MapDimensions class with coordinates provided
MapDimensions(GridSpace3D) - Constructor for class com.lobsterman.JavaGrinders.spatial.MapDimensions
standard constructor for the MapDimensions class with coordinates provided
MapDimensions(double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.MapDimensions
standard constructor for the MapDimensions class with coordinates provided
MapDimensions(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.MapDimensions
standard constructor for the MapDimensions class with coordinates provided
mapSpatialVectorToPanel(double, double) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
returns the coordinates of the point mapped into the panel
mapSpatialVectorToPanel(SpatialVector) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
returns the coordinates of the point mapped into the panel
mapVCoordToPanel(double) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
returns the horizontal coordinate mapped into the panel
mapXCoordToPanel(double) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
returns the horizontal coordinate mapped into the panel
masks - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
matchedIDs(TreeMap<Object, Integer>) - Method in class com.lobsterman.JavaGrinders.Variable
returns whether there is a value in this variable that is not present in a given TreeMap
matchUpByProximity(List<TargetCaptureData>, List<TargetCaptureData>) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
matches up individual TargetCaptureData ArrayLists based on past locations
Matrix - Class in com.lobsterman.JavaGrinders.Jama
Jama = Java Matrix class.
Matrix(int, int) - Constructor for class com.lobsterman.JavaGrinders.Jama.Matrix
Construct an rows-by-cols matrix of zeros.
Matrix(double, int, int) - Constructor for class com.lobsterman.JavaGrinders.Jama.Matrix
Construct an rows-by-cols constant matrix.
Matrix(double[][]) - Constructor for class com.lobsterman.JavaGrinders.Jama.Matrix
Construct a matrix from a 2-D array.
Matrix(double[][], int, int) - Constructor for class com.lobsterman.JavaGrinders.Jama.Matrix
Construct a matrix from a 2-D array.
Matrix(double[]) - Constructor for class com.lobsterman.JavaGrinders.Jama.Matrix
Construct a one-dimensional matrix from a one-column array
Matrix(double[], int) - Constructor for class com.lobsterman.JavaGrinders.Jama.Matrix
Construct a matrix from a one-dimensional packed array
MatrixCols - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
MatrixRows - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
Max - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
maxDouble - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
maxFloat - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
maxInt - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
maxLong - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
maxMoveDist - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
maxWindowRatioSize(double) - Method in class com.lobsterman.JavaGrinders.Presenter
scales the frame with a given width/height ratio to the full screen
maxWindowSize() - Method in class com.lobsterman.JavaGrinders.Presenter
scales the frame to the full screen available
maxXYZLocation - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
meanDistanceToCenter - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
MeanSquaredDisplacement - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
MeanX - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
 
MeanY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
MeasureOfAssoc - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
 
menuBar - Static variable in class com.lobsterman.JavaGrinders.AppEngine
 
menuBar - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
menuHeight - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
miClear - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miClose - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miCopy - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miCut - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miDescriptX - Variable in class com.lobsterman.JavaGrinders.StatTablePresenter
 
miDescriptY - Variable in class com.lobsterman.JavaGrinders.StatTablePresenter
 
miFitXY - Variable in class com.lobsterman.JavaGrinders.StatTablePresenter
 
millisBetweenFrames - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
Min - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
minDouble - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
miNew - Variable in class com.lobsterman.JavaGrinders.Presenter
 
minFloat - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
minInt - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
minLong - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
minorVersion - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
minPolarity - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
 
minPoly - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
minPoly_Area - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
minus(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
C = A - B
minus(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Subtracts a vector from this one and returns the result.
minusEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
A = A - B
minXYZLocation - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
miOpen - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miPaste - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miSave - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miSaveAs - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miSelectAll - Variable in class com.lobsterman.JavaGrinders.Presenter
 
miUndo - Variable in class com.lobsterman.JavaGrinders.Presenter
 
MODE_ABOVEVALUE - Static variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
MODE_ALL - Static variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
MODE_BELOWVALUE - Static variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
MODE_BETWEENVALUES - Static variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
MODE_DROPBELOWVALUE - Static variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
MODE_NONE - Static variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
MODE_RISEABOVEVALUE - Static variable in class com.lobsterman.JavaGrinders.control.TriggerProc
 
ModelEffects - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
MONOBOTH - Static variable in class com.lobsterman.JavaGrinders.control.AudioInterface
 
MONOLEFT - Static variable in class com.lobsterman.JavaGrinders.control.AudioInterface
 
MONORIGHT - Static variable in class com.lobsterman.JavaGrinders.control.AudioInterface
 
mouseClicked(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
mouseClicked(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
 
mouseClicked(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
handle a mouseClicked Event
mouseDragged(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
handle a mouseDragged Event
mouseEntered(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
mouseEntered(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
handle a mouseEntered Event
mouseExited(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
mouseExited(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
handle a mouseExited Event
mouseMoved(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
handle a mouseMoved Event
mousePressed(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
mousePressed(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHMovieComponent
handle a mousePressed Event
mousePressed(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
handle a mousePressed Event
mouseReleased(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
mouseReleased(MouseEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
handle a mouseReleased Event
movButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
moveCol(Variable, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
moves a column
moveDelay - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
MoveDescriptives - Class in com.lobsterman.JavaGrinders.spatial
provides the interface for obtaining descriptive statistics from continuous variables.
MoveDescriptives() - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
empty constructor ensures that the only objects of this type are the elements enumerated above
MoveDescriptives(double) - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
constructor ensures that the only objects of this type are the elements enumerated above
moveInStore - Variable in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
 
MoveVariable - Class in com.lobsterman.JavaGrinders.spatial
handles a vector of information for a series of moves
MoveVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveVariable
Standard constructor for the MovesVariable class using a VariableOrganizer
MoveVector - Class in com.lobsterman.JavaGrinders.spatial
characterizes a single move from a start capture at one time to an end capture at another time.
MoveVector(Capture, Capture, SpatialVector) - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveVector
Standard constructor for the MoveVector class with start and end captures, and pevious movement angle provided
MoveVector(Capture) - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveVector
Standard constructor for the MoveVector class with start and end captures provided, no previous move is available
MoveVector(Capture, Capture) - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveVector
Standard constructor for the MoveVector class with start and end captures provided, no previous move is available
MoveVector(SpatialVector, SpatialVector) - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveVector
Standard constructor for the MoveVector class with start and end captures provided
MoveVector() - Constructor for class com.lobsterman.JavaGrinders.spatial.MoveVector
Empty constructor for the MoveVector class with start at 0 and end capture provided
movieRateReporter - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
MovingBarsDialog - Class in com.lobsterman.JavaGrinders.VisualStimulus
 
MovingBarsDialog(MovingBarsGenerator) - Constructor for class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsDialog
 
MovingBarsGenerator - Class in com.lobsterman.JavaGrinders.VisualStimulus
This class controls the animation of visual objects on a computer screen
MovingBarsGenerator(Experiment) - Constructor for class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
standard constructor for the DeviceController class
MSE - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
MSM - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
MSMP - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
mSPerStep - Variable in class com.lobsterman.JavaGrinders.control.SignalGenerator
 
multGridIntervals(int) - Method in class com.lobsterman.JavaGrinders.Grid
increases the number of grid units by a factor
multiply(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
multiplies the constant with each value of the variable
multiply(NumberVariable) - Method in class com.lobsterman.JavaGrinders.NumberVariable
multiplies the variable with the corresponding value of the other variable
MultiVarAnalyzer - Class in com.lobsterman.JavaGrinders.parametric
ParametricAnalyzer class - sets up a general analyzer for continuous data.
MultiVarAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.parametric.MultiVarAnalyzer
Standard constructor for MultiVarAnalyzer
MultiVarDescriptives - Class in com.lobsterman.JavaGrinders.parametric
provides the interface for obtaining descriptive statistics from continuous variables.
MultiVarDescriptives() - Constructor for class com.lobsterman.JavaGrinders.parametric.MultiVarDescriptives
empty private constructor ensures that the only objects of this type are the elements enumerated above
MultiXYPresenterPanel - Class in com.lobsterman.JavaGrinders.Instruments
a presenter for plotting a relationship between X and Y
MultiXYPresenterPanel(int) - Constructor for class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
Standard constructor for the XYPresenterPanel class
MultRegressionResults - Class in com.lobsterman.JavaGrinders.parametric
provides the interface for obtaining descriptive statistics from continuous variables.
MultRegressionResults(int) - Constructor for class com.lobsterman.JavaGrinders.parametric.MultRegressionResults
empty constructor

N

N - Variable in class com.lobsterman.JavaGrinders.parametric.MultiVarDescriptives
 
nativeHeight - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
nativeHeight - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
NativeUtils - Class in com.lobsterman.JavaGrinders.Utilities
A simple library class which helps with loading dynamic libraries stored in the JAR archive.
NativeUtils() - Constructor for class com.lobsterman.JavaGrinders.Utilities.NativeUtils
 
nativeWidth - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
nativeWidth - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
nCols - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
needsColor - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
 
needsDarkObj - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
 
needsDataReset - Variable in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
needsLightObj - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
 
needsRefresh - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
negate() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
negate the SpatialVector
negateX() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
negate the x axis of the SpatialVector
negateY() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
negate the y axis of the SpatialVector
negateZ() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
negate the z axis of the SpatialVector
NetworkDeviceManager - Class in com.lobsterman.JavaGrinders.control
 
NetworkDeviceManager() - Constructor for class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
 
NetworkInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for a command line (SSH)
NetworkInterface(Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.NetworkInterface
 
next(int) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextBeta(double, double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextBoolean() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextBoolean(double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextChiSq() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextChiSq(int) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextChiSq(int, double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextExp() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextExp(double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextExp(double, double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextFrameTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
nextGamma() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextGamma(double, double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextGamma(double, double, double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextGaussian() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextGaussian(double, double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextInt() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextInt(int) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextMove(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
returns a Capture with random coordinates
nextPoisson(double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextPoisson() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextPolarVector(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
returns a Capture with random coordinates
nextRenderedFrameTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
nextSpatialVector(double, double, double, double, double, double) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
returns a Capture with random coordinates
nextSpatialVector() - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
returns a Capture with random coordinates
nextSpatialVector(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
returns a Capture with random coordinates
nextUniform() - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nextUniform(double, double) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
nFactorialTerms - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
nFramesProcessed - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
nFramesProduced - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
nHTiles - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
 
nInteractionTerms - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
nMainTerms - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
nMiss - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
nModelParameters - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
NOMINAL - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
NONE - Variable in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
NONE - Static variable in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
NONE - Static variable in class com.lobsterman.JavaGrinders.VariableDesignRole
 
norm1() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
One norm
norm2() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Two norm
norm2() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Two norm
normF() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Frobenius norm
normInf() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Infinity norm
notOffUntil - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 
notOnDur - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 
notOnUntil - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 
nRows - Variable in class com.lobsterman.JavaGrinders.GoodnessOfFitResults
 
nSel - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
nTrackJobs - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
NUM_MAXITERATOR - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
NUMBER - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
 
NumberDescriptives - Class in com.lobsterman.JavaGrinders
provides the interface for obtaining descriptive statistics from continuous variables.
NumberDescriptives() - Constructor for class com.lobsterman.JavaGrinders.NumberDescriptives
empty constructor
NumberVariable - Class in com.lobsterman.JavaGrinders
handles things that a general variable containing numbers should do or know about.
NumberVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.NumberVariable
Standard constructor for the root number Variable class using a VariableOrganizer
NumberVariable(String, VariableOrganizer, double[]) - Constructor for class com.lobsterman.JavaGrinders.NumberVariable
Standard constructor for the NumberVariable class using a double array of data
numObjects - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
nUse - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
nVTiles - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
 

O

ObjectTracer - Interface in com.lobsterman.JavaGrinders.Tracker
the interface that shows which routines must be implemented for identifying objects in images *
octetBytesToStr(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
converts a byte array of octets into a string
onDur - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 
onTheMove - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
OpenCV_Version - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
OpenCVMovieProc - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the analysis of video frames
OpenCVMovieProc() - Constructor for class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
empty private constructor ensures that the variables are enumerated
OpenCVMovieTracker - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling a video tracking application
OpenCVMovieTracker(String, String) - Constructor for class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
Constructor for the Tracker class.
OpenCVRecordProc - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the analysis of video frames
OpenCVRecordProc() - Constructor for class com.lobsterman.JavaGrinders.Tracker.OpenCVRecordProc
empty private constructor ensures that the variables are enumerated
OpenCVTracker - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling a video tracking application
OpenCVTracker(String, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
Constructor for the Tracker class.
OpenCVTracker(int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
Constructor for the Tracker class.
OpenCVTracker(float, int, TrackingJobSettingsGroup, boolean, boolean, boolean, DeviceInterface, OpenCVRecordProc) - Constructor for class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
Deprecated Constructor for the OpenCVTracker class, provided as legacy for the Bhimani OPC paper
openStreamControl(Pointer<UvcLibrary.uvc_device_handle>, UvcLibrary.uvc_frame_format, int, int, int) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
openUVCDevice(int) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
openUVCDeviceHandle(Pointer<UvcLibrary.uvc_device>) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
operChannelsInUse - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
opponent - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
 
orderPointsForRect(Point, Point) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
creates a Rectangle from two corner Points
ORDINAL - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
Origin - Variable in class com.lobsterman.JavaGrinders.Grid
 
originPoint - Variable in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
os - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
OSArch - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
Oscilloscope - Class in com.lobsterman.JavaGrinders.Instruments
root class for all kinds of objects that visualize data
Oscilloscope(String, double) - Constructor for class com.lobsterman.JavaGrinders.Instruments.Oscilloscope
Basic constructor for the Presenter class
Oscilloscope(String, double, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Instruments.Oscilloscope
Basic constructor for the Presenter class
Oscilloscope(String, double, DeviceInterface, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Instruments.Oscilloscope
Standard constructor for the Presenter class
OSCInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for a command line (SSH)
OSCInterface(Object[]) - Constructor for class com.lobsterman.JavaGrinders.control.OSCInterface
 
OSDataModel - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
OSName - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
OSVersion - Static variable in class com.lobsterman.JavaGrinders.JavaGrinders
 
outFile - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
outPath - Variable in class com.lobsterman.JavaGrinders.Tracker.Producer
 
OutputOperations - Interface in com.lobsterman.JavaGrinders.control
the interface that shows which routines must be implemented for indenfitying objects in images
outputStream - Variable in class com.lobsterman.JavaGrinders.control.ArduinoInterface
 

P

paint(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
paints the cell
paint(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
basic routine to coordinate a full paint of the applet
paint(Graphics) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
repaint the whole composition and blit to the JPanel.
paint(Graphics) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
repaint the whole composition and blit to the JPanel.
paint(Graphics) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
repaint the whole composition and blit to the JPanel.
paint(Graphics) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
paint the frame
paintComponent(Graphics) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
paint method
paintComponent(Graphics) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
paint method
paintComponent(Graphics) - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
paintComponent method
paintComponent(Graphics) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
paint method
paintComponent(Graphics) - Method in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
paintComponent method
paintExpected(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
basic routine to paint the expected cells
paintFields(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
paints the various fields
paintFore(Graphics) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
paintFore(Graphics) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
paintGrid(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
basic routine to paint the frame for the grid for the cells
paintObserved(Graphics) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
basic routine to paint the observed cells
paintPathPoly(int, int, int, int, double, double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
makes the polygon that is covered by all the moves at a given width
paintPathSegment(int, int, int, int, double, double, int) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
makes the polygon that is covered by all the moves at a given width
paintScaleX - Variable in class com.lobsterman.JavaGrinders.spatial.MoveVariable
 
paintScaleY - Variable in class com.lobsterman.JavaGrinders.spatial.MoveVariable
 
Parameters - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
ParametricAnalyzer - Class in com.lobsterman.JavaGrinders.parametric
ParametricAnalyzer class - sets up a general analyzer for continuous data.
ParametricAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.parametric.ParametricAnalyzer
Standard constructor for ParametricAnalyzer
ParametricTerm - Class in com.lobsterman.JavaGrinders.parametric
VariableDesignRole class - specifies the datatype that best characterizes the variable
ParametricTerm() - Constructor for class com.lobsterman.JavaGrinders.parametric.ParametricTerm
empty private constructor ensures that the only objects of this type are the elements * enumerated above
PARTIAL - Variable in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
pathAreaOverlapped - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
pathAreaTotal - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
pathOverlap - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
pauseRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
pchisq(double, double) - Method in class com.lobsterman.JavaGrinders.Utilities.ChiSquare
 
PeakData - Class in com.lobsterman.JavaGrinders.Instruments
root class for all kinds of data objects
PeakData() - Constructor for class com.lobsterman.JavaGrinders.Instruments.PeakData
 
PhidgetAdvancedServoInterface - Class in com.lobsterman.JavaGrinders.control
the main class controlling a microinfusion pump
PhidgetAdvancedServoInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
standard constructor for the PhidgetRelayController class
PhidgetAnalogOutInterface - Class in com.lobsterman.JavaGrinders.control
the main class controlling a microinfusion pump
PhidgetAnalogOutInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
standard constructor for the PhidgetRelayController class
PhidgetInterface - Class in com.lobsterman.JavaGrinders.control
the main class that represents an interface for external devices
PhidgetInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.PhidgetInterface
standard constructor for the DeviceInterface class
PhidgetInterface(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.PhidgetInterface
standard constructor for the DeviceInterface class
PhidgetRelayInterface - Class in com.lobsterman.JavaGrinders.control
the main class controlling a relay, use PhidgetInterface instead.
PhidgetRelayInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.PhidgetRelayInterface
standard constructor for the PhidgetRelayController class
PhidgetServoInterface - Class in com.lobsterman.JavaGrinders.control
the main class controlling a microinfusion pump
PhidgetServoInterface(int) - Constructor for class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
standard constructor for the PhidgetRelayController class
PhidgettEngine - Class in com.lobsterman.JavaGrinders.Instruments
root class for all kinds of objects that visualize data
PhidgettEngine(String, double) - Constructor for class com.lobsterman.JavaGrinders.Instruments.PhidgettEngine
Basic constructor for the InstrumentEngine class
PhidgettEngine(String, double, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Instruments.PhidgettEngine
Basic constructor for the InstrumentEngine class
PhidgettEngine(String, double, DeviceInterface, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Instruments.PhidgettEngine
Standard constructor for the InstrumentEngine class
pickLabelColors() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
report color in pixel
pickLabelColorsFromDialog() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
fill label colors for TrackingJobs from a ColorChooser Dialog
pickPixelValue() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
report byte value in pixel
PicturePresenterPanel - Class in com.lobsterman.JavaGrinders
a presenter for a picture placed within a JFrame.
PicturePresenterPanel() - Constructor for class com.lobsterman.JavaGrinders.PicturePresenterPanel
standard constructor for the PicturePresenter class.
Pixel - Class in com.lobsterman.JavaGrinders.Tracker
a pixel structure
Pixel(int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.Pixel
Standard constructor for the Pixel class.
Pixel(int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.Pixel
Standard constructor for the Pixel class.
Pixel() - Constructor for class com.lobsterman.JavaGrinders.Tracker.Pixel
empty constructor for the Pixel class.
Pixel(Point2D) - Constructor for class com.lobsterman.JavaGrinders.Tracker.Pixel
Standard constructor for the Pixel class.
Pixel(Point2D, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.Pixel
Standard constructor for the Pixel class.
playTone(int, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHSoundUtils
 
playTone(int, int, double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHSoundUtils
 
plotAngles(Graphics2D) - Method in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
draws the angle frequencies
plotBody(Point, Color, Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
plotCircularAxes(Graphics2D) - Method in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
draws the frame for the circle and labels the angles
plotCircularGraph(Graphics2D) - Method in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
draws the frame for the circle and labels the angles
plotCircularMean(Graphics2D) - Method in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
draws the mean and vectorStrength for the angles
plotCylonRaider(TargetCaptureData, Color, Color, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
plotData(Graphics2D, CaptureVariable) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
plots the coordinates
plotDiameter - Variable in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
 
plotDirection(TargetCaptureData, Color, Color, boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
plotExtended - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
plotGrids(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
plots the grids
plotGroupToSpatialMap(Graphics2D, Group) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
plots the group of CaptureVariables
plotHistogram(Grid, Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
draws the histogram
plotHistogram(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
draws the histogram
plotMapFrame(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
draws the frame for the map and labels the coordinates
plotMarker - Variable in class com.lobsterman.JavaGrinders.Variable
 
plotObject(TargetCaptureData, Color, Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
plotOrientation(TargetCaptureData, Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
plotPt(Point, Color) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
plotRadius - Variable in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
 
plotXGrid(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
plots the X axis grid
plotXYOriginAxes(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
draws the frame for the map and labels the coordinates
plotYGrid(Graphics2D) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
plots the vertical grid
plus(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
C = A + B
plus(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Adds another vector to this vector.
plusEquals(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
A = A + B
POLAR_ORDER - Variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Compares two points by polar angle (between 0 and 2pi) with respect to this point.
PolarVector - Class in com.lobsterman.JavaGrinders.spatial
characterizes a spherical vector with degrees for longitude and latitude, and vector length - longDeg 0 - x-axis, 90 - y-axis
PolarVector(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.PolarVector
constructor specifying initial degrees for longitude and latitude, and vector length.
PolarVector() - Constructor for class com.lobsterman.JavaGrinders.spatial.PolarVector
constructor that creates a zero vector.
PolarVector(SpatialVector, SpatialVector) - Constructor for class com.lobsterman.JavaGrinders.spatial.PolarVector
constructor specifying initial degrees for XY and XZå, vector length, and Date XY for the western hemisphere and XZ for the southern hemisphere are expressed as negative values
PotentialGenerator - Class in com.lobsterman.JavaGrinders.control
the main class controlling a CMA microinfusion pump
PotentialGenerator(DeviceInterface, float, int) - Constructor for class com.lobsterman.JavaGrinders.control.PotentialGenerator
standard constructor for the Potential Generator
power(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
calculates the power of each entry and returns it as a new variable
powerDown() - Method in class com.lobsterman.JavaGrinders.AppEngine
Standard destructor for video tracker
powerDown() - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
Shutting down the video tracker
powerDown() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
Shutting down the video tracker
powerUp() - Method in class com.lobsterman.JavaGrinders.AppEngine
set-up all the needed parts for capturing objects of interest
powerUp() - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
set-up all the needed parts for capturing objects of interest
powerUp() - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
set-up all the needed parts for capturing objects of interest
powerUp() - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
set-up all the needed parts for capturing objects of interest
powerUp() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
set-up all the needed parts for capturing objects of interest
PP - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
PRECISIONMULT - Variable in class com.lobsterman.JavaGrinders.ContingencyTable
 
predict(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Predict the membership of an object to one of the different groups.
predictM(double[]) - Method in class com.lobsterman.JavaGrinders.parametric.DiscriminantAnalysis
Predict the membership of an object to one of the different groups based on Mahalanobis distance
preloadOpenCV() - Static method in class com.lobsterman.JavaGrinders.JavaGrinders
tries to preload the opencv native library from its usual installation directory
PREPARE - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
prepareEventInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets up the event interface
prepareEventInterface() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
prepare the event interface
Presenter - Class in com.lobsterman.JavaGrinders
root class for all kinds of objects that visualize data
Presenter() - Constructor for class com.lobsterman.JavaGrinders.Presenter
Constructor for the Presenter class
Presenter(String) - Constructor for class com.lobsterman.JavaGrinders.Presenter
Constructor for the Presenter class
Presenter(double) - Constructor for class com.lobsterman.JavaGrinders.Presenter
Constructor for the Presenter class
Presenter(String, double) - Constructor for class com.lobsterman.JavaGrinders.Presenter
Standard constructor for the Presenter class
Presenter(String, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Presenter
Standard constructor for the Presenter class
Presenter(String, double, PresenterPanel) - Constructor for class com.lobsterman.JavaGrinders.Presenter
Standard constructor for the Presenter class
PresenterPanel - Class in com.lobsterman.JavaGrinders
root class for all kinds of objects that visualize data
PresenterPanel() - Constructor for class com.lobsterman.JavaGrinders.PresenterPanel
Constructor for the PresenterPanel class
primeUse - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
print(int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Print the matrix to stdout.
print(PrintWriter, int, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Print the matrix to the output stream.
print(NumberFormat, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Print the matrix to stdout.
print(PrintWriter, NumberFormat, int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Print the matrix to the output stream.
printMessage(OSCMessage) - Static method in class com.lobsterman.JavaGrinders.control.OSCInterface
 
process(float[], int, float) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
A standard peak detector in time series.
processSensorEvent(SensorChangeEvent) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
handles the incoming data from the sensor
processTargetDataList(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
process the list of found targets
Producer - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling an image generator
Producer(File, int, int, float) - Constructor for class com.lobsterman.JavaGrinders.Tracker.Producer
Constructor for the AVIProducer class.
Producer(File, int, int, long) - Constructor for class com.lobsterman.JavaGrinders.Tracker.Producer
Constructor for the AVIProducer class.
pullHigh() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
pulls the voltage High on its channel
pullLow() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
pulls the voltage Low on its channel

Q

qr() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
QR Decomposition
QRDecomposition - Class in com.lobsterman.JavaGrinders.Jama
QR Decomposition.
QRDecomposition(Matrix) - Constructor for class com.lobsterman.JavaGrinders.Jama.QRDecomposition
QR Decomposition, computed by Householder reflections.
quickTest_streamCallBack(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
quickTest_streamToFrame(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
quickTest_streamToFrame2(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
quitIfInvalid - Static variable in class com.lobsterman.JavaGrinders.control.Experiment
 

R

R - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
 
r() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns the polar radius of this point.
R2 - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
 
R2adj - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
 
R_ORDER - Static variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Compares two points by polar radius.
rand - Variable in class com.lobsterman.JavaGrinders.Variable
 
randGenerator - Variable in class com.lobsterman.JavaGrinders.control.Experiment
 
random(int, int) - Static method in class com.lobsterman.JavaGrinders.Jama.Matrix
Generate matrix with random elements
RandomNumberGenerator - Class in com.lobsterman.JavaGrinders.Utilities
 
RandomNumberGenerator() - Constructor for class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
RandomNumberGenerator(long) - Constructor for class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
rank() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Matrix rank
rank() - Method in class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Effective numerical matrix rank
rank(boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
rank the values in this array
RaoSpacingU - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
RaoSpacingUProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
rawDataObject - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
RayleighProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
RayleighR - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
RayleighZ - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
read() - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
Reads the next byte from the port.
read(int) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
The same contract as SerialInputStream.read(), except overrides this stream's default timeout with the given timeout in milliseconds.
read(byte[]) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
Non-blocking read of up to buf.length bytes from the stream.
read(byte[], int, int) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
Non-blocking read of up to length bytes from the stream.
read(BufferedReader) - Static method in class com.lobsterman.JavaGrinders.Jama.Matrix
Read a matrix from a stream.
readImageFromFile() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
Load an BufferedImage from a file
readInputs(byte) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
Read inputs on BlinkMs that have inputs
readPNGToRef() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
reads a reference frame from a file
readRegisters(int, byte, int) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
gets the sensor value
readToInternalArray() - Method in class com.lobsterman.JavaGrinders.DataFileParser
nitty gritty of reading and parsing, it first steps thrpugh and gets the number * of rows and columns, then opens an array of that size to read into, then fills * it with the content of the file in a second pass
receiver - Variable in class com.lobsterman.JavaGrinders.control.OSCInterface
 
recordEllipse() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on tracing of Area of interest using the mouse - ellipse
recordPolygon() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on tracing of Area of interest using the mouse - polygon
RecordProc - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the analysis of video frames
RecordProc() - Constructor for class com.lobsterman.JavaGrinders.Tracker.RecordProc
empty private constructor ensures that the variables are enumerated
RecordProcRunner - Class in com.lobsterman.JavaGrinders.Tracker
the main thread class idling the VideoCapture
RecordProcRunner(RecordProc) - Constructor for class com.lobsterman.JavaGrinders.Tracker.RecordProcRunner
Standard constructor for the Runner class
recordRects() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on tracing of Area of interest using the mouse - rectangle
recycleYokeTimes - Variable in class com.lobsterman.JavaGrinders.control.ControlDesignType
 
refBufferedImage - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
REFERENCE - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
referenceButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
referenceMenu - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
refFrame - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
register(Variable) - Method in class com.lobsterman.JavaGrinders.spatial.Group
registers an Animal in the group
register(Variable) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
submit control of the variable to a VariableOrganizer
RegressionResults - Class in com.lobsterman.JavaGrinders.parametric
provides the interface for obtaining descriptive statistics from continuous variables.
RegressionResults(int) - Constructor for class com.lobsterman.JavaGrinders.parametric.RegressionResults
standard constructor
relativeToFrame(Point) - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
calculates coordinates relative to another Point
relativeToFrame(Point, Point) - Static method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
calculates coordinates relative to another Point
relativeToOrigin - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
relativeToPoint(Point, Point) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
calculates coordinates relative to another Point
releaseI2C() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
releases i2c devices
releaseUVC() - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
Release the UVC framework
reMap(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.Arena
returns the MapDimensions for the Constraint
reMap(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.Constraint
returns the Capture remapped according to the rules of the constraint
reMap(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.Constraint
returns the spatial vector remapped according to the rules of the constraint
reMap(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.WrapAroundWorld
returns the MapDimensions for the Constraint
reMapInConstraint(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
remaps a capture for a given constraint
remapLatLongToDistanceCoords(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
returns a latitude/longitude Capture remapped into a real distance
removeChangeListener(ChangeListener) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
renderBackground(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
renders a background image once, then sets it to null to avoid continued rendering
renderFrame(BufferedImage, List<TargetCaptureData>, String) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
renders target data and info into frame over a provided background, then adds it into the AVIProducer
renderFrame(List<TargetCaptureData>, String) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
renders target data and info into frame, then adds it into the AVIProducer
renderImage(BufferedImage) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
renders a background image once, then sets it to null to avoid continued rendering
renderObjects(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
renders target data into the frame
renderReference() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
installs image edits into the reference frame
replaceSelectedRows(Object) - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for all rows based on select state of another variable
ReplicatedGAnalyzer - Class in com.lobsterman.JavaGrinders
coordinates the analysis of contingency tables in an application.
ReplicatedGAnalyzer(ContingencyTable) - Constructor for class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
Standard constructor using an InteractionTable
ReplicatedGAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.ReplicatedGAnalyzer
Standard constructor using a VariableOrganizer and an InteractionTable
ReplicatedGoodnessOfFitResults - Class in com.lobsterman.JavaGrinders
holds a set of results obtained for an analysis of a contingency table
ReplicatedGoodnessOfFitResults(int[], int[], int[], double[]) - Constructor for class com.lobsterman.JavaGrinders.ReplicatedGoodnessOfFitResults
Standard constructor
report() - Method in class com.lobsterman.JavaGrinders.BasicData
 
Report_LOCATION_FULL - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
Report_LOCATION_ONLY - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
Report_NONE - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
Report_XCOORD - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
Report_YCOORD - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
reportCoordinate(Pixel) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
write the pixel coordinates into the reports
reportCoordinateX(int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
write the x pixel coordinates into the reports
reportCoordinateY(int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
write the x pixel coordinates into the reports
reportDescriptors(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
write the pixel coordinates into the reports
reportDeviceStatus() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
reports the status of the device
reportDeviceStatus() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
reports the status of the device
reportExtended - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
reportOverallResults() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
reports whatever final results the procedure has collected
reportResults(TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
plots coordinates and reports target results
reportSetup(TrackingJobSetting, List<SGPolygon>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
plots the setup polygons and reports the setup parameters
reportTargetData(TrackingJobSetting, int, TargetCaptureData) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
write the target's capture data into the reports
reportTimeStamp() - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
report the current time to wherever needed
reportTimeStamp() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
report the current time to wherever needed
resample(int) - Method in class com.lobsterman.JavaGrinders.Variable
only retain every Nth row
resample2DPathByDist(double) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
retraces the connected coordinates with a given step length
resamplePath(double[]) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
retraces the path with different step lengths
resetAllChannels() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
resets all channels for the interface
resetAllChannels() - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
reset the channels
resetButton - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
resetComposer() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
resets the graphics world for the plotting canvas
resetStats() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the spatial vectors as an array
resetTraces() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
reset the sensor traces
resolutionPanel - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
restoreSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
restores the select flag for all rows from a previously saved set
restoreSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
restores the select flag for all rows from a previously saved set
restrictToMatchingUseRows(Variable) - Method in class com.lobsterman.JavaGrinders.Variable
restricts the select flag to those rows that are usable in both variables
restrictToMatchingUseRows(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
restricts the use flag to those rows that are usable in the variables as well as in the Organizer
restrictToMatchingUseRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
restricts to those rows that are usable across the entire VariableOrganizer
restrictToValidRowsOnly() - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for all valid (non-missing) rows to true
resumeBlackColorRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
resumeColorBlackRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
resumeColorRamp(boolean) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
resumeColorWhiteRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
resumeRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
resumeWhiteColorRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
retreat - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
 
reverseDirection() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
reverse the direction of the MoveVector
reverseDirection() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
reverses the direction of the vector
reverseRows(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
reverses the values of two given rows
reverseRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
reverses the values of two given rows
RHComponent - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the live video display
RHComponent(TrackerEngine, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.RHComponent
Standard constructor for the Tracker class.
RHDeviceUtilities - Class in com.lobsterman.JavaGrinders.RHUtilities
 
RHDeviceUtilities() - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
standard constructor
RHHSVSlidersDialog - Class in com.lobsterman.JavaGrinders.RHUtilities
 
RHHSVSlidersDialog(int, int, int, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
RHImgUtilities - Class in com.lobsterman.JavaGrinders.RHUtilities
implements support functions for images used in the JavaGrinders library
RHImgUtilities() - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
 
RHImshow - Class in com.lobsterman.JavaGrinders.RHUtilities
implements support functions for images used in the JavaGrinders library
RHImshow(String) - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHImshow
standard constructor
RHMovieComponent - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the live video display
RHMovieComponent(TrackerEngine, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.RHMovieComponent
Standard constructor for the Tracker class.
RHOpenCVUtils - Class in com.lobsterman.JavaGrinders.RHUtilities
implements support functions for images used in the JavaGrinders library
RHOpenCVUtils() - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHOpenCVUtils
 
RHPathPlotter - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the display of tracking jobs and locations captured from the live video.
RHPathPlotter(TrackerEngine, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
Standard constructor for the SGPathPlotter class.
RHProgressDialog - Class in com.lobsterman.JavaGrinders.RHUtilities
MySwing: Advanced Swing Utilites Copyright (C) 2005 Santhosh Kumar T This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
RHProgressDialog(Frame, RHProgressMonitor) - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHProgressDialog
 
RHProgressDialog(Dialog, RHProgressMonitor) - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHProgressDialog
 
RHProgressMonitor - Class in com.lobsterman.JavaGrinders.RHUtilities
MySwing: Advanced Swing Utilites Copyright (C) 2005 Santhosh Kumar T This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
RHProgressMonitor(int, boolean, int) - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
RHProgressMonitor(int, boolean) - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
RHProgressUtils - Class in com.lobsterman.JavaGrinders.RHUtilities
MySwing: Advanced Swing Utilites Copyright (C) 2005 Santhosh Kumar T This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
RHProgressUtils() - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHProgressUtils
 
RHRandomNumberGenerator - Class in com.lobsterman.JavaGrinders.RHUtilities
VariableFormat class - specifies whether variable contains
RHRandomNumberGenerator() - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
 
RHSoundUtils - Class in com.lobsterman.JavaGrinders.RHUtilities
implements support functions used in the JavaGrinders library
RHSoundUtils() - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHSoundUtils
 
RHUtilities - Class in com.lobsterman.JavaGrinders.RHUtilities
implements support functions used in the JavaGrinders library
RHUtilities() - Constructor for class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
 
RHVideoComponent - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the live video display
RHVideoComponent(TrackerEngine, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
Standard constructor for the Tracker class.
RIGHT - Static variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
RIGHT - Static variable in class com.lobsterman.JavaGrinders.spatial.View
 
RootMSE - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
rotate(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Rotate vector in XYZ
rotate(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Rotate vector in XYZ
rotateShape(Shape, double, float, float) - Static method in class com.lobsterman.JavaGrinders.Utilities.ShapeUtilities
Rotates a shape about the specified coordinates.
rotateXY(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Rotate vector in XY
rotateXZ(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Rotate vector in XY
roundDown(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the number rounded down to the next lower integer
roundingFactor - Variable in class com.lobsterman.JavaGrinders.Grid
 
roundUp(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the number rounded up to the next higher integer
Rows - Variable in class com.lobsterman.JavaGrinders.Descriptives
 
rows - Variable in class com.lobsterman.JavaGrinders.Tracker.ImagePixelMat
 
rowToString(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the formated object as a string
run() - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
generates the Signal
run() - Method in class com.lobsterman.JavaGrinders.control.SineWaveGenerator
 
run() - Method in class com.lobsterman.JavaGrinders.control.SquarePulseTrainGenerator
generates the pulse train for the thread
run() - Method in class com.lobsterman.JavaGrinders.control.UVCReportRunnable
 
run() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProcRunner
give time to the tracker
runTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
runTimeCounter - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
runTimeString - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 

S

SAMPLE_RATE - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHSoundUtils
 
sampleConstantStepSize(long) - Method in class com.lobsterman.JavaGrinders.spatial.Group
returns a specific Animal from the entire group
satMaxValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
satMinValue - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHHSVSlidersDialog
 
saveExternalRefSettings - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
saveFile(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
user selects a file to save
saveFileChooser() - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
user selects a file to save
saveFileDialog(String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
user selects a file to save
saveRefToPNG() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
saves the reference frame to a file
saveRowsToFile(String) - Method in class com.lobsterman.JavaGrinders.Variable
saves all data values to a text file
saveRowsToFile(int, int, boolean, String) - Method in class com.lobsterman.JavaGrinders.Variable
saves data values for a range of rows to a text file
saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.Variable
saves the select flag for all currently selected rows
saveSelectedRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
saves the select flag for all rows
saveTheContent(File) - Method in class com.lobsterman.JavaGrinders.DataTablePresenter
handles a save as event
saveTimeNamedFile(String, String) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
user selects a file to save
saveToSVGFile(String) - Method in class com.lobsterman.JavaGrinders.Presenter
saves the content of the PresenterPanel to an SVG file
scale(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Multiplies this vector by a scalar and keeps the result.
scale(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Multiplies this vector by a scalar and keeps the result.
scale(Point) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
scales a rectangle from native to window coordinates
scale(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
scales a rectangle from native to window coordinates
scaleMouseLocation(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
translates the mouse Capture from screen coordinates to rows and columns of the matrix
scaleWindow() - Method in class com.lobsterman.JavaGrinders.AppEngine
scales the frame of the tracker to fit onto the screen.
scaleWindow() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
scales the frame of the tracker to fit onto the screen.
scanActiveOnLAN() - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
 
scanI2CBus_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
scan the i2c bus for devices
scanI2CBus_FTDI2xx(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
scan the i2c bus for devices
scanI2CBus_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
scan the i2c bus for devices
scanI2CBus_LinkM(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
scan the i2c bus for devices
scanNetworkInterfaces() - Static method in class com.lobsterman.JavaGrinders.control.NetworkDeviceManager
 
scrambleOrder(Vector<?>) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHRandomNumberGenerator
scrambles the order of elements in a vector
SDY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
SE - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
selectAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
select all rows with a value greater than the one provided
selectAbove(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value greater than the one provided
selectAbove(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
selects all rows that contain a double value above a given double value with the option to select from the previous set
selectAboveDistance(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value less than the one provided
selectAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
select all rows with a value greater or equal than the one provided
selectAboveEqual(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value greater than the one provided
selectAboveSpeed(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value less than the one provided
selectAfter(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value greater than the one provided
selectAfterEqual(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value greater than the one provided
selectAllRows() - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for all rows to true
selectAllRows() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the select flag for all rows to true
selectAngleRangeN(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
select all rows with a value between the lower and upper limits provided.
selectBefore(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value greater than the one provided
selectBeforeEqual(long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value greater than the one provided
selectBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
select all rows with a value less than the one provided
selectBelow(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value less than the one provided
selectBelow(Variable, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
selects all rows that contain a double value below a given double value with the option to select from the previous set
selectBelowDistance(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value less than the one provided
selectBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
select all rows with a value less or equal than the one provided
selectBelowEqual(double, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value less or equal than the one provided
selectBelowSpeed(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value less than the one provided
selectBetween(long, long, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value greater equal the start time and less or equal the end time
selectCell(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
selects a cell in the data matrix if it can be edited
selectDuplicateRows() - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for all duplicate rows
selectEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
select all rows with a value greater or equal than the one provided
selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for every nth row to true
selectEveryNthRow(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the select flag for every nth row to true
selectFirstValidCell() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
returns the first valid cell in the data matrix
selectInArea(GridSpace3D, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value locatad within the 3D box
selectInShape(Shape, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value locatad within the 3D box
selectNextValidCell() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
finds and selects the first valid cell in the data matrix
selectRange(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.NumberVariable
select all rows with a value between the lower and upper limits provided.
selectRange(double, double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
select all rows with a value between the lower and upper limits provided when moving in a clockwise fashion.
selectRange(double, double, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
select all rows with a value between the lower and upper limits provided.
selectRange(Variable, double, double, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
selects all rows that contain a double value between two given double values with the option from the previous set
selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for all rows to true
selectRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the select flag for all rows to true
selectUseRows() - Method in class com.lobsterman.JavaGrinders.Variable
restricts the select flag to those rows that are selected and not missing
selectValue(String, boolean) - Method in class com.lobsterman.JavaGrinders.StrVariable
select all rows with a String that matches the one provided
selectValue(Object, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
selects rows that match a given object from the currently selected set of rows
selectValue(Variable, Object, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
selects all rows that match a given value in a given variable with the option to select from the previous set
selectWithinDistanceFrom(double, SpatialVector, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a value located within distance from a specific point
selectXAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with an X value greater than the one provided
selectXAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with an X value greater or equal than the one provided
selectXBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with an X value less than the one provided
selectXBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with an X value less or equal than the one provided
selectYAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Y value greater than the one provided
selectYAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Y value greater or equal than the one provided
selectYBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Y value less than the one provided
selectYBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Y value less or equal than the one provided
selectZAbove(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Z value greater than the one provided
selectZAboveEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Z value greater or equal than the one provided
selectZBelow(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Z value less than the one provided
selectZBelowEqual(double, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
select all rows with a Z value less or equal than the one provided
sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.CLIInterface
 
sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
runs a command
sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
send a command
sendCommand(String) - Method in class com.lobsterman.JavaGrinders.control.NetworkInterface
 
sendCommand(OSCMessage) - Method in class com.lobsterman.JavaGrinders.control.OSCInterface
 
sender - Variable in class com.lobsterman.JavaGrinders.control.OSCInterface
 
sendStartCommand() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
controls a start command
sendStartCommand(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
controls a start command
sendStopCommand() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
controls a stop command
sendStopCommand(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
controls a stop command
sensChannelsInUse - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
sensorChanged(SensorChangeEvent) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
handles the incoming data from the sensor
SensorDeviceOperator - Class in com.lobsterman.JavaGrinders.control
the main class retrieving analog data
SensorDeviceOperator(int, int) - Constructor for class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
standard constructor for the DeviceController class
SensorDeviceOperator(int) - Constructor for class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
standard constructor for the DeviceController class
SensorDeviceOperator_movingMean - Class in com.lobsterman.JavaGrinders.control
the main class retrieving analog data
SensorDeviceOperator_movingMean(int, int) - Constructor for class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
standard constructor for the DeviceController class
sensorIsRunning - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
sensorNumber - Variable in class com.lobsterman.JavaGrinders.control.DataValue
 
sensorTraces - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
sensorValue - Variable in class com.lobsterman.JavaGrinders.control.DataValue
 
SerialInputStream - Class in com.lobsterman.JavaGrinders.control
also provides support for performing blocking reads with timeouts.
SerialInputStream(SerialPort) - Constructor for class com.lobsterman.JavaGrinders.control.SerialInputStream
Instantiates a SerialInputStream for the given SerialPort Do not create multiple streams for the same serial port unless you implement your own synchronization.
SerialOutputStream - Class in com.lobsterman.JavaGrinders.control
It is instantiated by passing the constructor a SerialPort instance.
SerialOutputStream(SerialPort) - Constructor for class com.lobsterman.JavaGrinders.control.SerialOutputStream
Instantiates a SerialOutputStream for the given SerialPort Do not create multiple streams for the same serial port unless you implement your own synchronization.
serialPort - Variable in class com.lobsterman.JavaGrinders.control.ArduinoInterface
 
services - Static variable in class com.lobsterman.JavaGrinders.control.USBDeviceManager
 
services - Static variable in class com.lobsterman.JavaGrinders.RHUtilities.RHDeviceUtilities
 
session - Variable in class com.lobsterman.JavaGrinders.control.CLIInterface
 
set(int, int, double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Set a single element.
Set22Comp_7 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
set2DArray(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets a 2D array of doubles for the ContingencyTable
Set33Char_6 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
Set37Boat_3 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
Set49Child_4 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
Set55Indep_5 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
Set59Hunt_4 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
Set59WM_2 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
Set61Indust_5 - Variable in class com.lobsterman.JavaGrinders.GraphColorSchemes
 
setAnalysisProcs(AnalysisProc, AnalysisProc) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
sets the procedues used to analyse the moves
setAnglesType() - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
sets the variable to type ANGLES
setAnglesType() - Method in class com.lobsterman.JavaGrinders.Variable
sets the variable to type ANGLES
setAOI(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the area of interest
setAperture_Auto(Pointer<UvcLibrary.uvc_device_handle>, boolean) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
setApertureTime(Pointer<UvcLibrary.uvc_device_handle>, int) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
setApertureTime(int) - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
set the aperture time for the UVC Camera
setApplyFilterBeforeDetection(boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets whether an unsharpen filter should be applied to the frame prior to analysis
setAutoColumnColors() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
stacks a number of dependent variables on top of each other, their respective variable names are stored in a second variable
setAutoNUnits() - Method in class com.lobsterman.JavaGrinders.Grid
automatically finds and sets the number of units in the space
setAutoReferenceBackground(TrackingJobSetting, List<SGPolygon>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
returns a guess for the objects to track
setAxisDirections(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the directions of the axes in the gridspace
setAxisDirections(boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the directions of the axes in the gridspace
setBackColor(Color) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
setbgColor(Color) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
sets a color for the background
setBGImage(Image) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
sets the Presenter that owns the Panel
setBusID_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setByteLength(int) - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
sets the byte length
setByteValue(int, byte) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
sets the output value on a channel.
setByteValue(byte) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the byte value on a channel.
setByteValue(int) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the value for the channel
setByteValue(int, byte) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the output value on a channel.
setByteValue(DataChannelDescriptor, byte) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the output value on a channel.
setCameraID(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets the camera ID
setCellValue(int, int, double) - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
sets one element for this matrix with a double
setCellValue(int, int, double) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets a single element for this matrix with a double
setCenterPixel(Pixel) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
set the center of the target
setChannel(int) - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
sets the channel
setChannelAccess(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the interface to polling or event-driven
setChannelID(int) - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
sets a channel
setColLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a particular column label for the ContingencyTable
setColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets new row and column labels for the ContingencyTable
setColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets new row and column labels for the ContingencyTable
setColorLabel(Color) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the color for the color tracking job
setColumnPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets the expected probabilities for different columns
setCompareHighValue(int) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
sets the high value for a comparison
setCompareLowValue(int) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
sets the low value for a comparison
setConnect(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
sets whether the Captures should be visually connected
setConnect(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns whether the move should be visually connected
setConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
installs a spatial constraint for the variable
setConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.Group
install a spatial constraint for the Group
setConstraint(Constraint) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
links an arena to the framework
setContinuousType() - Method in class com.lobsterman.JavaGrinders.NumberVariable
sets the variable to type CONTINUOUS
setControlInterface(DeviceInterface) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
sets the control interface
setCoordMapRect(Dimension) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
sets the Presenter that owns the Panel
setCoordMapRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
sets the Presenter that owns the Panel
setCParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets the number of columns for the matrix
setCRParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets the number of columns for the matrix
setCurrent(String, int) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
setCustomColorRow(int, Color) - Method in class com.lobsterman.JavaGrinders.Variable
sets the custom color for a given row
setDarkestPixel(Pixel) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
 
setDataChannelDescriptor(DataChannelDescriptor) - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
lists the info
setDataFileName(String) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the data file name
setDataNotes(String) - Method in class com.lobsterman.JavaGrinders.BasicData
 
setDataOutFile(boolean) - Method in class com.lobsterman.JavaGrinders.control.Experiment
create a new text file for the captured locations
setDataOutFile() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
create a new text file for the captured locations
setDataRate(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
set the data rate
setDataTimeStamp(long) - Method in class com.lobsterman.JavaGrinders.BasicData
 
setDataValue(double) - Method in class com.lobsterman.JavaGrinders.BasicData
 
setDefaultbgColor() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
sets the color of the background to the default background color
setDefaultfgColor() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
sets the color of the content to the default foreground color
setDefaultRowColLabels() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets default labels for row and column labels for the ContingencyTable
setDefVideoDimensions(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
sets constructor for the TrackingJobSettingsGroup class.
setDelimiters(String) - Method in class com.lobsterman.JavaGrinders.DataFileParser
sets the delimiters for the fields in the text file as a regular expression
setDeviceController(ControlDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
sets the device controller
setDeviceName(String) - Method in class com.lobsterman.JavaGrinders.control.Arduino
sets the name of the device
setDeviceName(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setDeviceNumber(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setDeviceSensor(SensorDeviceOperator) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
sets the device sensor
setDeviceSerialNumber(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setDeviceType(String) - Method in class com.lobsterman.JavaGrinders.control.Arduino
sets the type of the device
setDeviceType(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the mode for the DeviceInterface
setDeviceTypeStr(String) - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
lists the info
setDeviceVendor(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setDeviceVersion(String) - Method in class com.lobsterman.JavaGrinders.control.Arduino
sets the version of the device
setDiagonal(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets the diagonal of the ContingencyTable and resets all cell values
setDimensions(Rectangle) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
set the dimensions of the GridSpace3D class with a rectangle
setDimensions(SpatialVector, SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
set the dimensions of the GridSpace3D class with x and y coordinates
setDimensions(double, double, double, double, double, double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the dimensions for the GridSpace3D class with coordinates provided
setDimensions(NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
set the dimensions of the GridSpace3D class with x and y coordinates
setDimensions(NumberVariable, NumberVariable, NumberVariable) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
set the dimensions of the GridSpace3D class with x, y, and z coordinates
setDimensions(NumberVariable, NumberVariable, float) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
set the dimensions of the GridSpace3D class with x and y coordinates and a scaling factor
setDimensions(NumberVariable, NumberVariable, NumberVariable, float) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
set the dimensions of the GridSpace3D class with x and y coordinates and a scaling factor
setDimensions(int, int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
setDirection(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
sets the direction of the Axis
setDirectionRad(double) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the direction of the object in radians
setDirections(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.spatial.MapDimensions
sets the x and y directions for the MapDimensions
setDParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets the diagonal for the matrix
setEnabled(boolean) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
enables the channel
setEnabled(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
enabling the channel
setEnabled(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
returns the output voltage on a channel.
setEndCapture(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Sets the end capture of the move
setEngaged(boolean) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
engages the channel
setEngaged(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
engaging the channel
setEngaged(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
sets the device to a specific position Typically, the range might be 25 - 180 degrees, but this depends on the servo, each corresponding approximately to an angle in degrees.
setEngaged(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
sets the channel to engaged
setExternalData(Object) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the Object to print after the data
setExternalMovesDistribution(MoveVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
install an external distribution of Moves to sample from
setfgColor(Color) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
sets a color of the content
setFillColor(Color) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
sets the fill color of the bars
setFocus_Auto(Pointer<UvcLibrary.uvc_device_handle>, boolean) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
setFocusDistance(Pointer<UvcLibrary.uvc_device_handle>, int) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
setFocusDistance(int) - Method in class com.lobsterman.JavaGrinders.Tracker.LibUVCTracker
set the aperture time for the UVC Camera
setFontSize(int) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
sets the size of the font for the cell
setForeColor(Color) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
setFormula(String) - Method in class com.lobsterman.JavaGrinders.Variable
sets a formula for a given vector
setFps(float) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
set the fps of produced images.
setFrameRate(double) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the preferred frame rate
setFrameRate(float) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets the preferred rate for frames/second
setFrameSize(double) - Method in class com.lobsterman.JavaGrinders.Presenter
scales the frame to a given screen size
setFrameSize(Dimension) - Method in class com.lobsterman.JavaGrinders.Presenter
sets the frame to a given screen size
setFrameTimeString(String) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
sets the number of captures faded into a vanishing trail.
setGrid(int, Grid) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
sets the grid used in mapping the points
setGridInterval(double) - Method in class com.lobsterman.JavaGrinders.Grid
sets the grid interval for the axis
setGrids(Grid, Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the dimensions for the GridSpace3D class with coordinates provided
setGrids(Grid, Grid, Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the dimensions for the GridSpace3D class with coordinates provided
setGridSpace3D(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
creates a PresenterPanel with given dimensions
setGridSpace3D(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.PresenterPanel
sets the GridSpace used in mapping the points
setGroup(Group) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
links a group of animals to the framework
setHighliteColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
sets a highlite color for the animal
setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sets the highlite flag for a given row
setHighlitedRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the highlited info for a row
setHotShapes(List<Shape>) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the hot regions
setHotSpace(GridSpace3D) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the current 3D space that is "hot".
setHypothesisPs(double[]) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
sets the expected probabilities for different columns
setI2CHardware() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
sets the i2c hardware
setImage(Image) - Method in class com.lobsterman.JavaGrinders.PicturePresenterPanel
sets the image to display in the panel
setImage(Image) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
sets an Image for the Component
setImage(Image) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
sets an Image for the Component
setInterface(Object) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the provided interface for the device controller
setInterfaceType_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setItsName(String) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the name for the interface
setItsRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
updates the analysis areas for the tile group
setItsRenderer(FrameRenderer) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
get the frame renderer
setLabel(String) - Method in class com.lobsterman.JavaGrinders.Descriptives
sets a label for the descriptives as a tag in reporting
setLabelBars(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
setLabelEveryN(int) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
 
setLabelXGrid(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
setLabelYGrid(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
 
setLatLong(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
sets the CaptureVariable as a latitude longitude coordinate type
setLatLong(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
sets the SpatialVector as a latitude longitude coordinate type
setLength(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
Scales the vector to a particular length
setLength(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Scales the vector to a particular length
setLibraryVersion(float) - Method in class com.lobsterman.JavaGrinders.control.Arduino
sets the library version
setLineColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
sets a line color for the animal
setLocation(int, int) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
positions the cell at a given screen Capture
setLocationColor(Color) - Method in class com.lobsterman.JavaGrinders.Variable
sets a location color for the animal
setLocationsType() - Method in class com.lobsterman.JavaGrinders.Variable
sets the variable to type LOCATIONS
setLock(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sets whether a variable is locked for further selections, modifications, etc.
setMatrix(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.Applets.CellMatrix
sets all cells based on a ContingencyTable object
setMatrix(int, int, int, int, Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Set a submatrix.
setMatrix(int[], int[], Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Set a submatrix.
setMatrix(int[], int, int, Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Set a submatrix.
setMatrix(int, int, int[], Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Set a submatrix.
setMatrixDimensions(int, int, boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets new matrix dimensions for the ContingencyTable
setMatrixSize(int) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets the dimensions of the DominanceTable
setMaxDiff(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
setMaxVoltage(float) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the output voltage on a channel.
setMemoryRegister(int) - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
specifies a memory register
setMissingRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sets the missing flag for a given row
setMoveDirection(boolean) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
setMoveDirection(int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
setMovementCutoff(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
sets the cutoff value for whether the object has moved or not
setMovementCutoff(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
fills and returns the Descriptives with the default cutoff for movement
setName(String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets the name for the ContingencyTable
setName(String) - Method in class com.lobsterman.JavaGrinders.Variable
sets the name of the variable to the String provided
setNColumns(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Get column dimension.
setNControlInterfaceChannels(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the number of serial device controllers registered with the interface
setNominalType() - Method in class com.lobsterman.JavaGrinders.Variable
sets the variable to type NOMINAL
setNotes(String) - Method in class com.lobsterman.JavaGrinders.Variable
sets the notes for the variable
setNotOnDuration(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the duration for which the controller is forced off
setNRows(int) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Set row dimension.
setNRows(int) - Method in class com.lobsterman.JavaGrinders.Variable
sets the number of rows for the Variable
setNRows(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the number of rows for the VariableOrganizer
setNTraces(int) - Method in class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
sets the number of traces in the Panel
setNUnits(int) - Method in class com.lobsterman.JavaGrinders.Grid
sets the number of units in the space
setNUnits(int, int, int) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the number of x, y, z units for the Gridspace
setNUnits(int, int) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the number of x, y units for the Gridspace
setObjectMetrics(double, double, double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
sets whether the TargetCaptureData record was found on its main pass through the image
setObjLength(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
sets the object length for the target
setObjSizeVar(float) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the acceptable amount of variation in object size
setObjWidth(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
sets the object length for the target
setOnDuration(long) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the duration for which the controller is forced on
setOrdinalType() - Method in class com.lobsterman.JavaGrinders.Variable
sets the variable to type ORDINAL
setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Analyzer
sets the VariableOrganizer instance to the one provided
setOrganizer(VariableOrganizer) - Method in class com.lobsterman.JavaGrinders.Variable
sets a VariableOrganizer for the Variable
setOutputState(int, boolean) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xx_RH
sets the output state
setPanelSizeToFit(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
creates the Panel for presenting the active data
setParam(int, int, int, boolean) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets the parameters for the matrix
setPeakArea(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
setPeakHeight(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
setPeakTime(long) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
setPeakWidth(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
setPlotDimensions() - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
sets the plot dimensions
setPlotDimensions() - Method in class com.lobsterman.JavaGrinders.Presenter
sets the plot dimensions
setPlotTargetStyle(int) - Method in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
setPort_usb(UsbPort) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setPortID_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setPortParent_usb(UsbHub) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setPosition(int, double) - Method in class com.lobsterman.JavaGrinders.control.Arduino
sets the position of the controller
setPosition(double) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the device to a specific position
setPresenterPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
sets the panel for the presenter
setPresenterPanel(PresenterPanel) - Method in class com.lobsterman.JavaGrinders.Presenter
sets the panel for the presenter
setPreviousInterval(double) - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
setPreviousTCDs(List<TargetCaptureData>) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the previous TargetData
setPrimeUse(boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
sets whether the TargetCaptureData record was found on its main pass through the image
setProductID_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setProductName_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setProductName_uvc(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setProductTypeID_usb(int) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setProductTypeString_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setRecordProc(RecordProc) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVTracker
sets the RecordProc for the tracker
setRecordProc(RecordProc) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets the RecordProc for the tracker
setReferenceImageEdits(List<ImageEdit>) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets some reference edits for the RecordProc
setRelOrigin(Point) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the analysis rectangle for the tracking job
setReportToConsole(boolean) - Method in class com.lobsterman.JavaGrinders.Stringer
controls whether output goes to the console
setReportType(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
 
setRowColLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets new row and column labels for the ContingencyTable
setRowColLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets new row and column labels for the ContingencyTable
setRowLabel(int, String) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns a particular column label for the ContingencyTable
setRowLabels(TreeMap<?, ?>) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets new row and column labels for the ContingencyTable
setRowLabels(String[]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets new row and column labels for the ContingencyTable
setRowOrder(Vector<Object>) - Method in class com.lobsterman.JavaGrinders.Variable
sets the rowOrder for the variable
setRowOrderRow(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
sets the number of rows for the Variable
setRParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets the number of rows for the matrix
setSameXYScale(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
x and y Axis measures are at the same scale
setSameXYZScale(boolean) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
x, y and z Axis measures are at the same scale
setScale(Dimension) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
sets the scale for plotting the coordinates
setScale(Dimension) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
sets the scale for plotting the coordinates
setSeed(long) - Method in class com.lobsterman.JavaGrinders.Utilities.RandomNumberGenerator
 
setSelectedCellValue(double) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets the value for the currently selected cell in the data matrix
setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sets the select flag for a given row
setSelectRow(int, boolean) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets the selection info for a row
setSelectRows(Object) - Method in class com.lobsterman.JavaGrinders.Variable
sets all selected rows to a particular value
setSelectRowsToMissing() - Method in class com.lobsterman.JavaGrinders.Variable
sets all selected rows to missing
setSensorInterface(DeviceInterface) - Method in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
sets a sensor interface
setSerialNumber(int) - Method in class com.lobsterman.JavaGrinders.control.Arduino
sets the serial number of the device
setSerialNumberString_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setShowGrids(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
sets whether the grid lines will be drawn
setShowGridX(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
sets whether the horizontal grid will be drawn
setShowGridY(boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
sets whether the vertical grid will be drawn
setSignalGenerator(SignalGenerator) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the operator's signal generator
setsOutputVoltage(float) - Method in class com.lobsterman.JavaGrinders.control.SignalGenerator
sets the output voltages
setSParam(int) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets the shape the matrix
setSpatialMapLook(int) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
sets the look of the Map
setSpatialParameters(double, double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
links an arena to the framework
setSpeed(int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
setStartCapture(Capture) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Sets the start capture of the move
setState(int) - Method in class com.lobsterman.JavaGrinders.control.LEDButton
 
setStatusLED(LEDButton) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the status LED of the tracker
setString(String) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
sets string content to the string provided and gets rid of the numeric value for the cell
setSubRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.AVIProducer
 
setSubRect(Rectangle) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
set the export region
setTable(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyAnalyzer
Installs a crosstabulation (i.e., frequency) table.
setTable(InteractionTable) - Method in class com.lobsterman.JavaGrinders.HierarchyAnalyzer
Installs a crosstabulation (i.e., frequency) table that summmarizes interactions * between entities.
setTablePs(double[][]) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
sets the expected probabilities for different columns
setTargetDescriptor(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
sets whether the TargetCaptureData record was found on its main pass through the image
setTargetDescriptor(TargetDescriptor) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the targetDescriptor for the tracking job
setTaskState(int) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the task state of the RecordProc
setTilePositions(int, int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the tile position for the tracking job
setTimeBetween(long) - Method in class com.lobsterman.JavaGrinders.Tracker.Producer
set the time between produced images in ms.
setTimeBetweenFrames(float) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
sets the time between frames
setTimeMilliSecs(long) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
sets the timestamp for this capture
setTimeout(int) - Method in class com.lobsterman.JavaGrinders.control.SerialInputStream
Set the default timeout (ms) of this SerialInputStream.
setTimeRef(Date) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
sets the timestamp for this capture
setTimeSecs(long) - Method in class com.lobsterman.JavaGrinders.spatial.Capture
sets the timestamp for this capture
setTotal(int) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
setTraceTimes(long) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
start logging analog sensor values
setTracker(TrackerEngine) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
installs the tracker that controls the interface
setTracker(TrackerEngine) - Method in class com.lobsterman.JavaGrinders.Tracker.OpenCVRecordProc
sets the tracker which controls this RecordProc.
setTracker(TrackerEngine) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
sets the tracker which controls this RecordProc
setTrackingJobSettingsGroup(TrackingJobSettingsGroup) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets the tracking jobs
setTrackingType(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
sets the tracking type and type string for the tracking job
setTriggerProc(TriggerProc) - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
lists the info
setTriggerProc(TriggerProc) - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
sets the trigger procedure for the interface
setup() - Method in class com.lobsterman.JavaGrinders.control.Arduino
setup the device
setupAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
coordinates what needs to be done at the start of analysis
setupAppFramework() - Method in class com.lobsterman.JavaGrinders.AppEngine
sets the video component for the tracking application, either a live video display or a movie player
setupButtons() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
labels the analysis buttons
setupButtons() - Method in class com.lobsterman.JavaGrinders.Applets.HierarchyMatrixApplet
labels the analysis buttons
setupDataLogging() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
start logging analog sensor values
setUpDone - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
setupECells() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets up the expected cells, first it sets up the cells in memory, then it creates the applet's user interface elements to go with it.
setupECol(int, String) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
this section sets up a column for expected frequencies, where the content is inactive, it then adds a summary cell and fills it with a string provided
setupERow(int, String) - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
this section sets up a row for expected frequencies, where the content is inactive, it then adds a summary cell and fills it with a string provided
setupFields() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
this sets up the various fields of the applet
setupMenu - Variable in class com.lobsterman.JavaGrinders.AppEngine
 
setupOCells() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
sets up the observed cells, first it sets up the cells in memory, then it creates the applet's user interface elements to go with it.
setUVCCameraSettings(Pointer<UvcLibrary.uvc_device_handle>, int, short) - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
setValidRange(int, int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the valid range of the interface
setValue(double) - Method in class com.lobsterman.JavaGrinders.Applets.Cell
installs a double value for the cell
setValue(float) - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
sets the value for the channel
setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
sets the output value on a channel.
setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
sets the device to a specific position Typically, the range might be 25 - 180 degrees, but this depends on the servo, each corresponding approximately to an angle in degrees.
setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
sets the output value on a channel.
setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
sets the output value on a channel.
setValue(int, float) - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
sets the device to a specific position Typically, the range might be 25 - 180 degrees, but this depends on the servo, each corresponding approximately to an angle in degrees.
setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
sets a general object for a given row of the Vector
setValue(int, double) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
sets a general object for a given row of the Vector
setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
sets a general object for a given row of the Vector
setValue(int) - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
sets the value for the pixel coordinates
setValue(int, Object) - Method in class com.lobsterman.JavaGrinders.Variable
sets a general object for a given row of the Vector
setValue(int, int) - Method in class com.lobsterman.JavaGrinders.Variable
sets an integer value for a given row of the Vector
setValue(int, float) - Method in class com.lobsterman.JavaGrinders.Variable
sets a float value for a given row of the Vector
setValue(int, double) - Method in class com.lobsterman.JavaGrinders.Variable
sets a double value for a given row of the Vector
setValue(int, char) - Method in class com.lobsterman.JavaGrinders.Variable
sets a char value for a given row in the Vector
setValue(int, boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sets a boolean value for a given row of the Vector
setVanishingTrail(int) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
sets the number of captures faded into a vanishing trail.
setVanishingTrail(int) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets the number of captures faded into a vanishing trail.
setVanishingTrailAlpha(float) - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
sets whether past captures fade the longer ago they occurred
setVariable(Variable, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
returns a particular variable designated by a reference number, this corresponds to the zero-based order in which variables were registered with the VariableOrganizer.
setVariableDesignRole(int) - Method in class com.lobsterman.JavaGrinders.Variable
sets the design role for the variable
setVariableDesignRole(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets a design role for a column
setVariableDesignRoleForAll(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sets a design role for every column (i.e., X, Y, label or not selected)
setVariableFormat(int) - Method in class com.lobsterman.JavaGrinders.Variable
sets the variable format
setVariableType(int) - Method in class com.lobsterman.JavaGrinders.Variable
sets the variable type
setVendorID_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setVendorName_usb(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setVendorName_uvc(String) - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
setVideoProducer(Producer) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
sets the producer for recording to an AVI movie
setVoltage(int, double) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
sets the output voltage on a channel.
setWarnings(boolean) - Method in class com.lobsterman.JavaGrinders.Grid
controls whether warnings are issued
setWidth(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
sets the width of the path
setWidth(double) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the end capture of the move
setX(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
sets x component
setXGrid(Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the x grid for the Gridpsace3D
setXScale(double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the scale of the x Axis
setXYDeg(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
sets the longitude component in degrees
setXYDirectionRad(double) - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
sets whether the TargetCaptureData record was found on its main pass through the image
setXYMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
sets the map dimensions for the xy plot of the data
setXYRad(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
sets the longitude component in radians
setXYZMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
sets the map dimensions for the xyz plot of the data
setXZDeg(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
sets the latitude component in degrees
setXZMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
sets the map dimensions for the xz plot of the data
setXZRad(double) - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
sets the latitude component in radians
setY(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
sets y component
setYGrid(Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the y grid for the Gridpsace3D
setYScale(double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the scale of the y Axis
setYZMapDimensions(MapDimensions) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
sets the map dimensions for the yz plot of the data
setZ(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
sets z component
setZGrid(Grid) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the z grid for the Gridpsace3D
setZScale(double) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
sets the scale of the z Axis
SGPolygon - Class in com.lobsterman.JavaGrinders.Tracker
Implementation of a polygon in double precision
SGPolygon() - Constructor for class com.lobsterman.JavaGrinders.Tracker.SGPolygon
empty constructor for the SGPolygon class.
SGPolygon(Shape) - Constructor for class com.lobsterman.JavaGrinders.Tracker.SGPolygon
standard constructor for the SGPolygon class.
shape - Variable in class com.lobsterman.JavaGrinders.Tracker.ImageEdit
 
Shape_Ellipse - Static variable in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
 
Shape_NONE - Static variable in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
 
Shape_Rectangle - Static variable in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
 
ShapeUtilities - Class in com.lobsterman.JavaGrinders.Utilities
Utility methods for Shape objects.
shiftExponent(double, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the number after shifting a given number of exponents
shortToHexString(short) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an short as a hexadecimal string
shortToHexString(short, boolean) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an short as a hexadecimal string
showButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
showImage(Mat) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHImshow
converts an image from OpenCV to java space
showImage(BufferedImage) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHImshow
converts an image from OpenCV to java space
SHOWSETUP - Static variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
showVideo(boolean) - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on live video display
shutDown() - Method in class com.lobsterman.JavaGrinders.Tracker.CustomCameraDialog
 
shuttingDown - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
sign() - Method in class com.lobsterman.JavaGrinders.NumberVariable
returns the sign for each value of the variable
SignalGenerator - Class in com.lobsterman.JavaGrinders.control
the main class controlling a CMA microinfusion pump
SignalGenerator(DeviceInterface, float, int) - Constructor for class com.lobsterman.JavaGrinders.control.SignalGenerator
standard constructor for the Sine wave Generator
signedArea() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the signed area of the polygon in screen pixels
signedByteToInt(byte) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an unsigned byte as an integer
signedShortToInt(short) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an signed short as an integer
sin2Sum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
SineWaveGenerator - Class in com.lobsterman.JavaGrinders.control
the main class controlling a CMA microinfusion pump
SineWaveGenerator(DeviceInterface, float, int, float) - Constructor for class com.lobsterman.JavaGrinders.control.SineWaveGenerator
standard constructor for the Sine wave Generator
SingularValueDecomposition - Class in com.lobsterman.JavaGrinders.Jama
Singular Value Decomposition.
SingularValueDecomposition(Matrix) - Constructor for class com.lobsterman.JavaGrinders.Jama.SingularValueDecomposition
Construct the singular value decomposition
sinMean - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
sinSum - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
Sinuosity - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
Skewness - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
SocialAnimal - Class in com.lobsterman.JavaGrinders.socialModel
characterizes an animal as a social entity.
SocialAnimal() - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
Empty constructor for the Animal class
SocialAnimal(String) - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
Constructor for the Animal class
SocialAnimal(String, Group) - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialAnimal
Standard constructor for the Animal class
SocialInteraction - Class in com.lobsterman.JavaGrinders.socialModel
characterizes an animal as a social entity.
SocialInteraction() - Constructor for class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
Empty constructor for the SocialInteraction class
solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.CholeskyDecomposition
Solve A*X = B
solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.LUDecomposition
Solve A*X = B
solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Solve A*X = B
solve(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.QRDecomposition
Least squares solution of A*X = B
solveTranspose(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Solve X*A = B, which is also A'*X' = B'
sort() - Method in class com.lobsterman.JavaGrinders.Variable
sorts the values for all rows using a map of hashcodes
sort(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sorts the values for all rows using a map of hashcodes
sort(int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
sorts the VariableOrganizer by the values in a variable
sort2(boolean) - Method in class com.lobsterman.JavaGrinders.Variable
sorts the values for all rows using a map of hashcodes
sortAlongMoveVector(Vector<SpatialVector>) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the point of intersection of this move with a circle of a given radius
sortReverseAlongMoveVector(Vector<SpatialVector>) - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the point of intersection of this move with a circle of a given radius
SpatialAnalyzer - Class in com.lobsterman.JavaGrinders.spatial
coordinates spatial analyses.
SpatialAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialAnalyzer
Standard constructor for the SpatialAnalyzer class with a VariableOrganizer provided
SpatialDescriptives - Class in com.lobsterman.JavaGrinders.spatial
provides the interface for obtaining descriptive statistics from continuous variables.
SpatialDescriptives() - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
empty private constructor ensures that the only objects of this type are the elements enumerated above
SpatialModellingFramework - Class in com.lobsterman.JavaGrinders.spatial
provides the top-level interface for coordinating a spatially explicit model
SpatialModellingFramework() - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialModellingFramework
empty constructor
SpatialVector - Class in com.lobsterman.JavaGrinders.spatial
provides the interface for obtaining descriptive statistics from continuous variables.
SpatialVector(double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
constructor specifying initial x, y, and z coordinates
SpatialVector(double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
Standard constructor for the 2D SpatialVector class with x and y coordinates provided
SpatialVector(Point2D) - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
Standard constructor for the 2D SpatialVector class with x and y coordinates provided
SpatialVector() - Constructor for class com.lobsterman.JavaGrinders.spatial.SpatialVector
empty constructor
speedMax - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
speedMean - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
speedMin - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
speedSD - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
speedVar - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
splitBiggestTarget(List<TargetCaptureData>, TrackingJobSetting) - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
splits targets if needed
splitBoundByLength(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the ratio of major vs minor axis
splitByLength(int) - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the ratio of major vs minor axis
splitTargets - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
SpreadSheetInput - Class in com.lobsterman.JavaGrinders.Applets
implements a cell that handles input from a keyboard
SpreadSheetInput(String, FrequencyMatrixApplet, Color, Color, int, int, int, int, int) - Constructor for class com.lobsterman.JavaGrinders.Applets.SpreadSheetInput
create a new field from a set of given values from an initial string
sqr() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
calculate square for each cell
sqrEquals() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
calculate square for each cell
sqrt() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
calculate square root for each cell
sqrtEquals() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
calculate square root for each cell
SQUAREDEUCLIDIAN - Static variable in class com.lobsterman.JavaGrinders.DataTable
 
SquarePulseTrainGenerator - Class in com.lobsterman.JavaGrinders.control
the main class controlling a CMA microinfusion pump
SquarePulseTrainGenerator(Arduino, PWMPin, int, int) - Constructor for class com.lobsterman.JavaGrinders.control.SquarePulseTrainGenerator
standard constructor for the pulse train generator
SquaresCrossproductResults - Class in com.lobsterman.JavaGrinders.parametric
provides the interface for obtaining descriptive statistics from continuous variables.
SquaresCrossproductResults() - Constructor for class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
empty constructor
SS - Variable in class com.lobsterman.JavaGrinders.parametric.ParametricTerm
 
SSE - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
SSM - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
SSMComplete - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
SSMP - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
SST - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
SSX - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
 
SSXY - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
 
SSY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
stackYs() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
stacks a number of dependent variables on top of each other, their respective variable names are stored in a second variable
start() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
start the applet
start(String) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressMonitor
 
start - Variable in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
 
start - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
start - Variable in class com.lobsterman.JavaGrinders.spatial.TimeDescriptives
 
startAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
start the tracking
startAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
controls starting the analysis
startAnalysisTime - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
startButton - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
startDataIn() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
start collecting analog sensor values
startDataIn_DirectPolling() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
start collecting analog sensor values
startDataIn_DirectPolling(long) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
start collecting analog sensor values
startDataIn_EventDriven() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
start collecting analog sensor values
startEventInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
start the event interface
startSignalGenerator() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
turn off the serial device
startStreaming(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>, Pointer<UvcLibrary.uvc_frame_callback_t>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
startTimeDataIn - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
startTrackingCycler() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
initializes the timing framework, either via a ProcRunner or a callback
startUpDelay - Static variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
stateChanged(ChangeEvent) - Method in class com.lobsterman.JavaGrinders.RHUtilities.RHProgressDialog
 
stationary - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
Statistics - Class in com.lobsterman.JavaGrinders.Utilities
implements support functions used in the JavaGrinders library
Statistics() - Constructor for class com.lobsterman.JavaGrinders.Utilities.Statistics
 
StatTablePresenter - Class in com.lobsterman.JavaGrinders
given a DataParser object, its content is formatted automatically and presented as a JTable object placed within a scrollpane within a frame.
StatTablePresenter(VariableOrganizer, String) - Constructor for class com.lobsterman.JavaGrinders.StatTablePresenter
Standard constructor for the DataTablePresenter class using a VariableOrganizer
status - Variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
STATUS_EMPTY - Static variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
STATUS_FILLED - Static variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
STATUS_UPDATE - Static variable in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
 
STEREO - Static variable in class com.lobsterman.JavaGrinders.control.AudioInterface
 
stErr - Variable in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
 
stop() - Method in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
stop the applet
stopAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
stop the tracking
stopAnalysis() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
controls stopping the analysis
stopButton - Variable in class com.lobsterman.JavaGrinders.Instruments.InstrumentEngine
 
stopButton - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
stopDataIn() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
stop collecting analog sensor values
stopEventInterface() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
stop the event interface
stopRamp() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
stops ramping the colors
stopSignalGenerator() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
turn off the serial device
stopStreaming(Pointer<UvcLibrary.uvc_device_handle>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
Straightness - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
streamWithCallback(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>, Pointer<UvcLibrary.uvc_frame_callback_t>, long) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
strHeight - Variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
STRING - Static variable in class com.lobsterman.JavaGrinders.VariableFormat
 
Stringer - Class in com.lobsterman.JavaGrinders
represents the central entity that reports results.
Stringer() - Constructor for class com.lobsterman.JavaGrinders.Stringer
empty constructor
StringVariable - Class in com.lobsterman.JavaGrinders
handles a variable of Strings.
StringVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StringVariable
Standard constructor for the StringVariable class using a VariableOrganizer
StrVariable - Class in com.lobsterman.JavaGrinders
handles a variable of Strings.
StrVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.StrVariable
Standard constructor for the root string Variable class using a VariableOrganizer
studentTConfidenceInterval(int, double, double) - Static method in class com.lobsterman.JavaGrinders.Utilities.Statistics
Computes absolute size of half of a student-t confidence interval for given degrees of freedom, probability, and observed value.
subSelectRows(Variable, Object) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
deselects rows that match a given object from the currently selected set of rows
subtract(double) - Method in class com.lobsterman.JavaGrinders.NumberVariable
subtracts the constant from each value of the variable
subtract(AngleVariable) - Method in class com.lobsterman.JavaGrinders.spatial.AngleVariable
sets a double value for a given row of the Vector
subtract(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Subtracts argument vector from this vector.
SUM - Static variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
SumX - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
 
SumX - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
SumX2 - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
 
SumXY - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
 
SumY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
SumY - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
SumY2 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
SumY3 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
SumY4 - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
SumZ - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
surveyI2CBus() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
surveys the i2c bus for devices
surveyI2CBus_FTDI2xx() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
surveys the i2c bus for devices
surveyI2CBus_FTDI2xx(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
surveys the i2c bus for devices
surveyI2CBus_LinkM() - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
surveys the i2c bus for devices
surveyI2CBus_LinkM(int, int) - Static method in class com.lobsterman.JavaGrinders.control.I2CDeviceManager
surveys the i2c bus for devices
surveyUSBTree() - Static method in class com.lobsterman.JavaGrinders.control.USBDeviceManager
survey USB devices
surveyUVCTree() - Static method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
svd() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Singular Value Decomposition
swapRows(int, int) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
swaps the values in the two rows of all variables
SymmetryTMinus - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
SymmetryTMinusProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
SymmetryTPlus - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
SymmetryTPlusProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 

T

t - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
tabs - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.ColorsDialog
 
TargetCaptureData - Class in com.lobsterman.JavaGrinders.Tracker
a pixel structure
TargetCaptureData(double, double, double, Date) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
Standard constructor for the TargetCaptureData class.
TargetCaptureData(Pixel) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
Standard constructor for the TargetCaptureData class.
TargetCaptureData() - Constructor for class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
Standard constructor for the TargetCaptureData class.
TargetCaptureData(SGPolygon) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
Standard constructor for the TargetCaptureData class.
TargetDescriptor - Class in com.lobsterman.JavaGrinders.Tracker
a pixel structure
TargetDescriptor() - Constructor for class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
Standard constructor for the Pixel class.
TargetDescriptor(boolean, float, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
Standard constructor for the Pixel class.
TargetStyle_COORD - Static variable in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
TargetStyle_CYLON_RAIDER - Static variable in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
TargetStyle_OBJECT - Static variable in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
TargetStyle_RAWIMAGE - Static variable in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
task - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
TauKr(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
calculate Kendal's tau statistic for a matrix and a second matrix passed in
tell(String) - Method in class com.lobsterman.JavaGrinders.Stringer
interface to console.print()
tellln(String) - Method in class com.lobsterman.JavaGrinders.Stringer
interface to console.println()
tellln(long) - Method in class com.lobsterman.JavaGrinders.Stringer
interface to console.println()
tellln(int) - Method in class com.lobsterman.JavaGrinders.Stringer
interface to console.println()
tellln(double) - Method in class com.lobsterman.JavaGrinders.Stringer
interface to console.println()
tellln(float) - Method in class com.lobsterman.JavaGrinders.Stringer
interface to console.println()
tellln() - Method in class com.lobsterman.JavaGrinders.Stringer
interface to console.println() - empty line
termIndeces - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 
test() - Static method in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieTracker
makes a new default RecordProc
testLEDColors(int) - Method in class com.lobsterman.JavaGrinders.control.LinkM_RH
test the control of LED color on a blinkm
testReceiving(OSCMessage) - Method in class com.lobsterman.JavaGrinders.control.OSCInterface
 
testTriggerOff() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
switches off the DeviceController
testTriggerOn(long) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
keeps the TriggerProc on
testUVCSettings(Pointer<UvcLibrary.uvc_device_handle>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
testUVCStreaming(Pointer<UvcLibrary.uvc_device_handle>, Pointer<uvc_stream_ctrl>) - Method in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
theAnimals - Variable in class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
 
theDiffPixelsC - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
theDiffPixelsD - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
theDiffPixelsL - Variable in class com.lobsterman.JavaGrinders.Tracker.RecordProc
 
theInteractions - Variable in class com.lobsterman.JavaGrinders.socialModel.AggressionAnalysisProc
 
theta() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Returns the angle of this point in polar coordinates.
tileH - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
 
tileV - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
 
time_On - Variable in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
 
TimeDescriptives - Class in com.lobsterman.JavaGrinders.spatial
provides the interface for obtaining descriptive statistics from continuous variables.
TimeDescriptives() - Constructor for class com.lobsterman.JavaGrinders.spatial.TimeDescriptives
empty private constructor ensures that the only objects of this type are the elements enumerated above
timeDevice - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
timeDiff - Variable in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
 
timeDiff - Variable in class com.lobsterman.JavaGrinders.spatial.TimeDescriptives
 
timer - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
times(double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Multiply a matrix by a scalar, C = s*A
times(Matrix) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Linear algebraic matrix multiplication, A * B
times(double) - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Multiplies this vector by a scalar and returns the result.
TIMES - Static variable in class com.lobsterman.JavaGrinders.VariableType
 
timesEquals(double) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Multiply a matrix by a scalar in place, A = s*A
timeStamp - Variable in class com.lobsterman.JavaGrinders.control.DataValue
 
TimeVariable - Class in com.lobsterman.JavaGrinders.spatial
handles a variable of Strings.
TimeVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.TimeVariable
Standard constructor for the stringVariable class using a VariableOrganizer
tjSettings - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
to1byte_Binary(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Returns a deep copy of the image
to1byte_Gray(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Returns a deep copy of the image
to1int_ARGB(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Returns a deep copy of the image
to3byte_BGR(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Returns a deep copy of the image
to4byte_ABGR(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Returns a deep copy of the image
toBufferedImage(Mat) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
creates a new BufferedImage from an OpenCV Mat
toBufferedImage(Image) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
This method returns a buffered image with the contents of an image
toBufferedImage(uvc_frame, int) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
This method returns a buffered image with the contents of an uvc_frame
toCaptureVariable() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVariable
returns the Move stored at a given row of the Vector
toCaptureVariable() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the spatial vectors as a CaptureVariable
toColorMat_8UC3(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Fill a Mat from a BufferedImage
toFile(BufferedWriter) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
writes a ContingencyTable into the writer for a file
toFile - Variable in class com.lobsterman.JavaGrinders.control.Experiment
 
toFile - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
toFile() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
writes a VariableOrganizer into a file writer
toFile(BufferedWriter) - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
writes a VariableOrganizer into a file writer
toFileString() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
returns the SpatialVector as a String for writing the Coordinates to a file/screen
toGrahamPt2DArray() - Method in class com.lobsterman.JavaGrinders.spatial.VectorVariable
creates an array of GrahamPt2D
toGrayMat_8UC1(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
Fill a Mat from a BufferedImage
toImage(BufferedImage) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHImgUtilities
This method returns an image with the contents of a BufferedImage
TOP - Static variable in class com.lobsterman.JavaGrinders.spatial.View
 
toPath2D() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
creates a Path2D object from the SGPolygon
toPoint() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
returns the vector as a point
toPolarVector() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
returns the vector as vector defined by measures of longitude, latitude, length
toPolygon() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
creates an awt polygon from the SGPolygon
toScreen - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
toSpatialVector() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
returns the vector as polar coordinates
toSpatialVector() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
returns the vector as vector defined by measures of longitude, latitude, length
toSpatialVector() - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
returns the info for the pixel as a SpatialVector
toSpatialVectors() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns the spatial vectors as an array
toString() - Method in class com.lobsterman.JavaGrinders.Applets.Cell
returns as a string
toString() - Method in class com.lobsterman.JavaGrinders.BasicData
 
toString(boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
returns the formatted object as a string
toString() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
report the record as a string
toString() - Method in class com.lobsterman.JavaGrinders.control.DataChannelDescriptor
report the record as a string
toString() - Method in class com.lobsterman.JavaGrinders.control.DataValue
standard constructor for the DataValue class
toString() - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
returns a summary of the interface as a string
toString() - Method in class com.lobsterman.JavaGrinders.control.DeviceOperator
report the class as a string
toString() - Method in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
toString() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator
gets the operator as a string
toString() - Method in class com.lobsterman.JavaGrinders.control.SensorDeviceOperator_movingMean
gets the operator as a string
toString() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
report the class as a string
toString() - Method in class com.lobsterman.JavaGrinders.Grid
returns the Grid as a String
toString() - Method in class com.lobsterman.JavaGrinders.Instruments.PeakData
 
toString() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
returns the formatted object as a string
toString(boolean, boolean, boolean) - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
returns the formatted object as a string
toString() - Method in class com.lobsterman.JavaGrinders.socialModel.SocialInteraction
turns the record into a string
toString() - Method in class com.lobsterman.JavaGrinders.spatial.Capture
Returns a string representation of the vector.
toString() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the GridSpace3D as a String
toString() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
Returns the move as a string
toString() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
Returns a string representation of the vector.
toString() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Returns a string representation of the vector.
toString() - Method in class com.lobsterman.JavaGrinders.Tracker.Pixel
returns the info for the pixel as a String
toString() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
returns a string descriptor of the object
toString() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetDescriptor
returns the info for the pixel as a String
toString() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
returns the TrackingJobSetting as a String
toString() - Method in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Return a string representation of this point.
toStringExtended() - Method in class com.lobsterman.JavaGrinders.Tracker.TargetCaptureData
returns the info for the pixel as a String
totalTime - Variable in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
 
toVector - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
toXYRect() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the x,y GridSpace3D as a Rectangle
toXZRect() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the x,z GridSpace3D as a Rectangle
toYZRect() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
returns the y,z GridSpace3D as a Rectangle
tProb - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
trace() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Matrix trace.
TraceAnalyzer - Class in com.lobsterman.JavaGrinders.Instruments
TraceAnalyzer class - sets up a general analyzer for time series data.
TraceAnalyzer(VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.Instruments.TraceAnalyzer
Standard constructor for ParametricAnalyzer
traceEllipse() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on tracing a rectangle in the window using the mouse - ellipse
traceHeight - Variable in class com.lobsterman.JavaGrinders.Instruments.MultiXYPresenterPanel
 
tracePolygon() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on tracing a rectangle in the window using the mouse - polygon
tracePt() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on locating a particular point in the window - point
traceRect() - Method in class com.lobsterman.JavaGrinders.Tracker.RHVideoComponent
turn on tracing a rectangle in the window using the mouse - rectangle
TrackerEngine - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling a video tracking application
TrackerEngine(String, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
Standard constructor for the Tracker class.
TrackerEngine() - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
empty constructor for the Tracker class.
trackerWindowDim - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
trackingC - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
TrackingJobSetting - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the different tracking jobs
TrackingJobSetting() - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(Rectangle, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(Rectangle, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(int, Shape, int, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(Rectangle, int, int, boolean, TargetDescriptor, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(int, Shape, int, int, boolean, TargetDescriptor, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(Rectangle, int, int, boolean, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(Rectangle, int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(int, Rectangle, int, int, boolean) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(Rectangle, int, Color) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(Rectangle, int, Color, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(int, Rectangle, int, Color) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSetting(int, Rectangle, int, Color, int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSetting
Standard constructor for the TrackingJobSetting class.
TrackingJobSettingsGroup - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the different tracking jobs
TrackingJobSettingsGroup() - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
Standard constructor for the TrackingJobSettingsGroup class
TrackingJobSettingsGroup(int) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
Constructor for the TrackingJobSettingsGroup class
TrackingJobSettingsGroup(TrackingJobSetting) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
Constructor for the TrackingJobSettingsGroup class
TrackingJobSettingsGroup(TrackingJobSetting[]) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobSettingsGroup
Constructor for the TrackingJobSettingsGroup class.
TrackingJobTileGroup - Class in com.lobsterman.JavaGrinders.Tracker
the main class controlling the different tracking jobs
TrackingJobTileGroup(int, int, Rectangle) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
Standard constructor for the TrackingJobTileGroup class.
TrackingJobTileGroup(int, int, int, int, Rectangle) - Constructor for class com.lobsterman.JavaGrinders.Tracker.TrackingJobTileGroup
Standard constructor for the TrackingJobTileGroup class.
trackingMenu - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
transpose() - Method in class com.lobsterman.JavaGrinders.ContingencyTable
transposes the table between X and Y dimensions
transpose() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Matrix transpose.
triads - Variable in class com.lobsterman.JavaGrinders.LinearityResults
 
triggerAboveValue(float, float) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
performs a test for the TriggerProc
triggerAlways() - Method in class com.lobsterman.JavaGrinders.control.AnalogOutTriggerProc
performs a test for the TriggerProc
triggerAlways() - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
performs a test for the TriggerProc
triggerBelowValue(float, float) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
performs a test for the TriggerProc
triggerBetweenValues(float, float, float) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
performs a test for the TriggerProc
triggerDropBelowValue(float, float) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
performs a test for the TriggerProc
TriggerProc - Class in com.lobsterman.JavaGrinders.control
the main class controlling the analysis of video frames
TriggerProc(int, float) - Constructor for class com.lobsterman.JavaGrinders.control.TriggerProc
Standard constructor for the Tracker class.
triggerRiseAboveValue(float, float) - Method in class com.lobsterman.JavaGrinders.control.TriggerProc
performs a test for the TriggerProc
trunc(double) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the number truncated to the next lower integer
tTestResults - Class in com.lobsterman.JavaGrinders.parametric
provides the interface for obtaining descriptive statistics from continuous variables.
tTestResults() - Constructor for class com.lobsterman.JavaGrinders.parametric.tTestResults
empty constructor
turnOff(int) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
stops the device on one channel.
turnOff(int) - Method in class com.lobsterman.JavaGrinders.control.AudioInterface
starts the device on one channel.
turnOff() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
turns off the serial device operate via sending start and stop commands rather than here directly
turnOff(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
stops the device on one channel.
turnOff(int) - Method in interface com.lobsterman.JavaGrinders.control.OutputOperations
 
turnOff(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
stops the device on one channel.
turnOff(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
stops the device on one channel.
turnOff(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
stops the device on one channel.
turnOffHardware(int) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
stops the device on one channel.
turnOffHardware(int) - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
stops the device on one channel.
turnOffHardware(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
stops the device on one channel.
turnOn(int) - Method in class com.lobsterman.JavaGrinders.control.ArduinoInterface
starts the device on one channel.
turnOn(int) - Method in class com.lobsterman.JavaGrinders.control.AudioInterface
starts the device on one channel.
turnOn() - Method in class com.lobsterman.JavaGrinders.control.ControlDeviceOperator
turns on the device controller operate via sending start and stop commands rather than here directly
turnOn(int) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
starts the device on one channel.
turnOn(int) - Method in interface com.lobsterman.JavaGrinders.control.OutputOperations
 
turnOn(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAdvancedServoInterface
starts the device on one channel.
turnOn(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetInterface
starts the device on one channel.
turnOn(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetServoInterface
starts the device on one channel.
turnOnHardware(int) - Method in class com.lobsterman.JavaGrinders.control.FTDI2xxInterface
starts the device on one channel.
turnOnHardware(int) - Method in class com.lobsterman.JavaGrinders.control.LinkMInterface
starts the device on one channel.
turnOnHardware(int) - Method in class com.lobsterman.JavaGrinders.control.PhidgetAnalogOutInterface
starts the device on one channel.
type - Variable in class com.lobsterman.JavaGrinders.Tracker.ImageEdit
 
Type_FILL - Static variable in class com.lobsterman.JavaGrinders.Tracker.ImageEdit
 
Type_NONE - Static variable in class com.lobsterman.JavaGrinders.Tracker.ImageEdit
 

U

uminus() - Method in class com.lobsterman.JavaGrinders.Jama.Matrix
Unary minus
uncompressRawImage() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
uncompress the raw compressed image into pixelData_V
undoBarMove() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
unfold(boolean, boolean) - Method in class com.lobsterman.JavaGrinders.ContingencyTable
unfold the table into an array of doubles
unitLength() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialVector
Normalizes vector to unit length
unitWidth - Variable in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
unscale(Point) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
translates a Point from window to native coordinate
unscale(Shape) - Method in class com.lobsterman.JavaGrinders.Tracker.RHComponent
translates a Rectangle from window to native coordinate
unsignedByteToInt(byte) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an unsigned byte as an integer
unsignedShortToInt(short) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
returns the value of an unsigned short as an integer
Update - Variable in class com.lobsterman.JavaGrinders.Applets.FrequencyMatrixApplet
 
updateBounds() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
updates the corner coordinates around the SGPolygon
updateCompElements() - Method in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
draws the outline of the areas of interest into the plotting canvas
updateDataFromGeometry() - Method in class com.lobsterman.JavaGrinders.Tracker.SGPolygon
updates the data array from the area's geometry
updateDesignRoleSums() - Method in class com.lobsterman.JavaGrinders.VariableOrganizer
updates the design roles for variables
updateEndCapture() - Method in class com.lobsterman.JavaGrinders.spatial.MoveVector
updates the endCapture to match the size of the vector
updateGrid() - Method in class com.lobsterman.JavaGrinders.Grid
updates the grid
updateMoveSaveDirection(int) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
updatePixelExtent() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
updates the size of the visual space when mapped to the screen pixels
updateRatios() - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
update the ratios with grid info
updateReference() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
placeholder for updating the reference frame.
updateRowOrder() - Method in class com.lobsterman.JavaGrinders.Variable
updates the row order for the variable
updateRunTime() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
update the time
updateSamplingRate(float) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
updating the sampling rate
updateScales(int, int) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
update scale factors for x and y Axes
updateScales(int, int, int) - Method in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
update scale factors for x, y and z Axes
updateTiming() - Method in class com.lobsterman.JavaGrinders.VisualStimulus.MovingBarsGenerator
 
updateTrackerLabels() - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
updates the trackers labels for the installed tracking jobs
updateTrackingComponent() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
updates the tracking component
updateVideoComponent() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
updates the video display component
updateXYZ() - Method in class com.lobsterman.JavaGrinders.spatial.PolarVector
updates the vector's cartesian coordinates
usb_ctx - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
USBDeviceManager - Class in com.lobsterman.JavaGrinders.control
 
USBDeviceManager() - Constructor for class com.lobsterman.JavaGrinders.control.USBDeviceManager
 
USBHub - Static variable in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
USBSerial - Static variable in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
useAngles(AngleVariable) - Method in class com.lobsterman.JavaGrinders.spatial.CircularGraphPresenterPanel
draws the frame for the circle and labels the angles
useColorData(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
sets the Data and calculates what it needs.
useConsole() - Method in class com.lobsterman.JavaGrinders.Stringer
returns whether the console is the destination
useData(ContingencyTable) - Method in class com.lobsterman.JavaGrinders.parametric.HistogramPresenterPanel
sets the Data and calculates what it needs
useData(NumberVariable, NumberVariable, boolean) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
sets the Data and calculates what it needs
useData(CaptureVariable) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
draws the frame for the circle and labels the angles
useData(Group) - Method in class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
sets the data to use for the panel
UVC_AUTO_EXPOSURE_MODE_APERTURE_PRIORITY - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
UVC_AUTO_EXPOSURE_MODE_AUTO - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
UVC_AUTO_EXPOSURE_MODE_MANUAL - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
UVC_AUTO_EXPOSURE_MODE_SHUTTER_PRIORITY - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
UVC_AUTO_FOCUS_MODE - Static variable in class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
UVCCamera - Static variable in class com.lobsterman.JavaGrinders.control.HardwareDevice
 
UVCDeviceManager - Class in com.lobsterman.JavaGrinders.control
 
UVCDeviceManager() - Constructor for class com.lobsterman.JavaGrinders.control.UVCDeviceManager
 
UVCReportRunnable - Class in com.lobsterman.JavaGrinders.control
 
UVCReportRunnable(int) - Constructor for class com.lobsterman.JavaGrinders.control.UVCReportRunnable
 

V

val - Variable in class com.lobsterman.JavaGrinders.Tracker.Pixel
 
val_12Bit(byte[]) - Static method in class com.lobsterman.JavaGrinders.RHUtilities.RHUtilities
converts a 2 byte array, 12 bit value into an integer
validDataSorted - Variable in class com.lobsterman.JavaGrinders.NumberVariable
 
validRange - Variable in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
VALUE - Static variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
valueOf(String) - Static method in enum com.lobsterman.JavaGrinders.JavaGrinders.OS
Returns the enum constant of this type with the specified name.
values() - Static method in enum com.lobsterman.JavaGrinders.JavaGrinders.OS
Returns an array containing the constants of this enum type, in the order they are declared.
vanishingTrailAlpha - Variable in class com.lobsterman.JavaGrinders.Tracker.RHPathPlotter
 
varCovarM - Variable in class com.lobsterman.JavaGrinders.parametric.MultiVarDescriptives
 
Variable - Class in com.lobsterman.JavaGrinders
handles things that a general variable should do or know about.
Variable() - Constructor for class com.lobsterman.JavaGrinders.Variable
empty constructor for the root Variable class
Variable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.Variable
Standard constructor for the root Variable class using a VariableOrganizer
VariableDesignRole - Class in com.lobsterman.JavaGrinders
VariableDesignRole class - specifies which role individual variables can play in experimental designs: "X" - independent variable, "Y" - dependent variable, "Label" - label, "Frequ" - frequency or "-" - no role
VariableFormat - Class in com.lobsterman.JavaGrinders
VariableFormat class - specifies whether variable contains numbers or strings
VariableOrganizer - Class in com.lobsterman.JavaGrinders
coordinates a set of variable.
VariableOrganizer() - Constructor for class com.lobsterman.JavaGrinders.VariableOrganizer
Standard constructor for a VariableOrganizer
VariableOrganizer(DataFileParser, boolean, boolean) - Constructor for class com.lobsterman.JavaGrinders.VariableOrganizer
Standard constructor for a VariableOrganizer using a DataParser object.
VariableOrganizer(DataFileParser) - Constructor for class com.lobsterman.JavaGrinders.VariableOrganizer
Standard constructor for a VariableOrganizer using a DataParser object.
VariableType - Class in com.lobsterman.JavaGrinders
VariableType class - specifies the datatype that best characterizes the variable
varMeans - Variable in class com.lobsterman.JavaGrinders.parametric.MultiVarDescriptives
 
VarXY - Variable in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
 
VarY - Variable in class com.lobsterman.JavaGrinders.NumberDescriptives
 
vecLength - Variable in class com.lobsterman.JavaGrinders.spatial.PolarVector
 
vectorMeanDeg - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
vectorMeanRad - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
vectorMedianDeg - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
vectorStrength - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
VectorVariable - Class in com.lobsterman.JavaGrinders.spatial
handles a variable of Captures (capture localities and time of capture).
VectorVariable(String, VariableOrganizer) - Constructor for class com.lobsterman.JavaGrinders.spatial.VectorVariable
Standard constructor for the CaptureVariable class using a VariableOrganizer
videoC - Variable in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
vidFrameTime - Variable in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
 
vidStartFrame - Variable in class com.lobsterman.JavaGrinders.Tracker.OpenCVMovieProc
 
View - Class in com.lobsterman.JavaGrinders.spatial
View class
VisualStimulusGenerator - Class in com.lobsterman.JavaGrinders.VisualStimulus
the main class controlling the colors for foreground and background
VisualStimulusGenerator(Experiment) - Constructor for class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
standard constructor for the VisualStimulusGenerator class
VisualStimulusGenerator(String, Experiment) - Constructor for class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
standard constructor for the VisualStimulusGenerator class
VTestProb - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
VTestU - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 
VTestV - Variable in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
 

W

WhiteToColor - Static variable in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
width - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
width - Variable in class com.lobsterman.JavaGrinders.spatial.MoveVariable
 
width - Variable in class com.lobsterman.JavaGrinders.Tracker.FrameRenderer
 
windowActivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.AppEngine
 
windowActivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
windowActivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
windowActivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
windowClosed(WindowEvent) - Method in class com.lobsterman.JavaGrinders.AppEngine
 
windowClosed(WindowEvent) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
windowClosed(WindowEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
windowClosed(WindowEvent) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
windowClosing(WindowEvent) - Method in class com.lobsterman.JavaGrinders.AppEngine
close the window
windowClosing(WindowEvent) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
window is closing
windowClosing(WindowEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
close the window
windowClosing(WindowEvent) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
closing the window as part of the WindowListener interface
windowDeactivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.AppEngine
 
windowDeactivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
windowDeactivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
windowDeactivated(WindowEvent) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
windowDeiconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.AppEngine
 
windowDeiconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
windowDeiconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
windowDeiconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
windowIconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.AppEngine
 
windowIconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
windowIconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
windowIconified(WindowEvent) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
windowOpened(WindowEvent) - Method in class com.lobsterman.JavaGrinders.AppEngine
 
windowOpened(WindowEvent) - Method in class com.lobsterman.JavaGrinders.control.DeviceInterface
 
windowOpened(WindowEvent) - Method in class com.lobsterman.JavaGrinders.Tracker.TrackerEngine
 
windowOpened(WindowEvent) - Method in class com.lobsterman.JavaGrinders.VisualStimulus.VisualStimulusGenerator
 
withinConstraint(SpatialVector) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
sets a constraint for the movement of the animal
withinTimeScope(long) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
check whether the time provided is withinthe time scope of the animal
WrapAroundWorld - Class in com.lobsterman.JavaGrinders.spatial
implements the spatially explicit stage for the modelling
WrapAroundWorld(GridSpace3D) - Constructor for class com.lobsterman.JavaGrinders.spatial.WrapAroundWorld
constructor with Dimensions provided
WrapAroundWorld(double, double, double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.WrapAroundWorld
constructor with Dimensions provided
WrapAroundWorld(double, double, double, double) - Constructor for class com.lobsterman.JavaGrinders.spatial.WrapAroundWorld
constructor with Dimensions provided
write(int) - Method in class com.lobsterman.JavaGrinders.control.SerialOutputStream
 
write(byte[]) - Method in class com.lobsterman.JavaGrinders.control.SerialOutputStream
 
write(byte[], int, int) - Method in class com.lobsterman.JavaGrinders.control.SerialOutputStream
 
writeKMLCoords(Writer) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the CaptureVariable's LineStyle into a KML file for display in Google Earth
writeKMLFile() - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the coordinates into a KML file for display in Google Earth
writeKMLFile(String) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the coordinates into a KML file for display in Google Earth
writeKMLFile(String) - Method in class com.lobsterman.JavaGrinders.spatial.Group
export the coordinates into a KML file for display in Google Earth
writeKMLIntro(Writer) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the CaptureVariable's LineStyle into a KML file for display in Google Earth
writeKMLLine(Writer) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the CaptureVariable's coordinates into a KML file for display in Google Earth
writeKMLLineStyle(Writer) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the CaptureVariable's LineStyle into a KML file for display in Google Earth
writeKMLOutro(Writer) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the CaptureVariable's LineStyle into a KML file for display in Google Earth
writeKMLPoints(Writer) - Method in class com.lobsterman.JavaGrinders.spatial.CaptureVariable
export the CaptureVariable's coordinates into a KML file for display in Google Earth
writeLineEnd() - Method in class com.lobsterman.JavaGrinders.Tracker.RecordProc
wraps up a line in file or on screen

X

X - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
X_ORDER - Static variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Compares two points by x-coordinate.
xLoc - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
XROLE - Static variable in class com.lobsterman.JavaGrinders.VariableDesignRole
 
xScale - Variable in class com.lobsterman.JavaGrinders.Tracker.RHComponent
 
XYDeg - Variable in class com.lobsterman.JavaGrinders.spatial.PolarVector
 
XYPresenterPanel - Class in com.lobsterman.JavaGrinders.parametric
a presenter for plotting a relationship between X and Y
XYPresenterPanel() - Constructor for class com.lobsterman.JavaGrinders.parametric.XYPresenterPanel
Standard constructor for the XYPresenterPanel class
xyRatio - Variable in class com.lobsterman.JavaGrinders.spatial.GridSpace3D
 
XZDeg - Variable in class com.lobsterman.JavaGrinders.spatial.PolarVector
 

Y

Y - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
Y_ORDER - Static variable in class com.lobsterman.JavaGrinders.Utilities.GrahamPt2D
Compares two points by y-coordinate.
yLoc - Variable in class com.lobsterman.JavaGrinders.Applets.Cell
 
YOKE - Static variable in class com.lobsterman.JavaGrinders.control.ControlDesignType
 
YROLE - Static variable in class com.lobsterman.JavaGrinders.VariableDesignRole
 
yScale - Variable in class com.lobsterman.JavaGrinders.Tracker.RHComponent
 
yVar - Variable in class com.lobsterman.JavaGrinders.parametric.RegressionResults
 

Z

Z - Static variable in class com.lobsterman.JavaGrinders.PresenterPanel
 
zeroCells - Variable in class com.lobsterman.JavaGrinders.ContTableResults
 
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.Descriptives
sets sums for Capture descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.NumberDescriptives
sets sums for Capture descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.parametric.CorrelationResults
sets sums for descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.parametric.RegressionResults
sets sums for descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.parametric.SquaresCrossproductResults
sets sums for Capture descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.parametric.tTestResults
sets sums for descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.CircularDescriptives
sets all sums for Capture descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.MoveDescriptives
sets all sums for Capture descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.SpatialDescriptives
sets sums for location descriptives to zeros
zeroDescriptives() - Method in class com.lobsterman.JavaGrinders.spatial.TimeDescriptives
sets sums for location descriptives to zeros
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JavaGrinders Library
v5.7

RH, 2017